View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5974_high_2 (Length: 581)
Name: NF5974_high_2
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5974_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Original strand, 44112881 - 44113423
Alignment:
| Q |
20 |
cgcaattcataacttatacatgttttgagtctaaaaatgtgtagttcggtttctgacaattcagattttacattaattggcaaacttcataagtttttta |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44112881 |
cgcaattcataacttatacatgttt-gagtctaaaaatgtgtagttcggtttctgacaattcagattttacattaattggcaaacttcataagattttta |
44112979 |
T |
|
| Q |
120 |
attaacgcatattgaagaacaggttcataacacaattattcaggtgacaccacccacgatcaaaagcagaacattagacagacagactcttgcaatgtac |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
44112980 |
attaacgcatattgaagaacaagttcataacacaattattcaggtgacaccacccacgatcaaaaacagaacattagac----agactcttgcaatgtac |
44113075 |
T |
|
| Q |
220 |
tgattgtatataacgaagacaaagattttaatgcaaagctaaactcttgatatttaaattataaacccttatttgtatgtgtttaggcaacctgttgaaa |
319 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44113076 |
tgattgtatataatgaagacaaagattttaatgcaaagctaaactcttgatatttaaattataaacccttatttgtatgtgtttaggcaacctgttgaaa |
44113175 |
T |
|
| Q |
320 |
agcaatactgttatgtaaaccattgtgttcatggtataaatgtttaaatataatttttgttcaattgagtatgtaaacacattgagaaatccttaaattt |
419 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44113176 |
agcaatattgttatgtaaaccattgtgttcattgtataaatgtttaaatataatttttgttcaattgagtat----acacattgagaaatccttaaattt |
44113271 |
T |
|
| Q |
420 |
tcttaatttcgtttctaatatttttatcaaactttgcaattgatggaacttaattgcatccatataactaattaaaggtgccgacccaataatgttcata |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44113272 |
tcttaatttcgtttctaatatttttatcaaactttgcaattgatggaacttaattgcatccatataactaattaaaggtgccgacccaataatgttcata |
44113371 |
T |
|
| Q |
520 |
tgcaatgccagaaagtttatattgtgttggaaacgtttataattatagaata |
571 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44113372 |
tgcaatgccagaaagtttacattgtgttggaaacgtttataattatagaata |
44113423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University