View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5974_low_1 (Length: 639)
Name: NF5974_low_1
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5974_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 10 - 628
Target Start/End: Original strand, 32666736 - 32667354
Alignment:
| Q |
10 |
catcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagcc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666736 |
catcatcatacgccaataataagtcaatgcagctggaactgaaccaatcatcaatatcaacctccatgcaacgtcagcctccggcggcacatcaaaagcc |
32666835 |
T |
|
| Q |
110 |
gttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagcta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666836 |
gttgccggcttcgaaccgctgcgaaataccaagcaaaccaccatagtaacagttgcactagccaatataccaaacccttgcatagaaaaaaccgcagcta |
32666935 |
T |
|
| Q |
210 |
taaaagaacctcttgtccttttatttgcaaactcagacgtaatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaa |
309 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32666936 |
taaaagaacctcttgtccttttattagcaaactcagacataatggtagaagataaaggataatcaccaccaattccaagccctaagaagaatctaaagaa |
32667035 |
T |
|
| Q |
310 |
accaagagatagtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagatcttgttagcatcaataataaggcgatcccgtagacg |
409 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
32667036 |
accaagagatagtaaaacacaagctctctttgttgtacagatggagaagccagaagctagagagcttgttagcatcaataataaggcgataccgtagacg |
32667135 |
T |
|
| Q |
410 |
tggcgccggccttttaggtctccgaggcgtccgaataggagctgaccgaaggcggttcctaggagtgcgacggagacaagagctgagaccacgaccgggt |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
32667136 |
tggcgccggccttttaggtctccgaggcgtccgaataggagctgaccgaaggcggttcctaggagtgcaacggagacaagggctgagaccacgaccgggt |
32667235 |
T |
|
| Q |
510 |
tgacttgacggatttcttggtggtcagagtagtatattcttcctagcatctttgtgatgagtgtgatggagaagaggtcataagagtcagtgaaaagtcc |
609 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
32667236 |
tgacttgacggatttcttggtggtcggagtagtatattcttcctagcatctttgtgatgagtgtgatggaaaaaaggtcataagagtcagtgaaaagtcc |
32667335 |
T |
|
| Q |
610 |
cattcctgctatgatgatg |
628 |
Q |
| |
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||||||||||||||||||| |
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| T |
32667336 |
cattcctgctatgatgatg |
32667354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 37315765 - 37315913
Alignment:
| Q |
169 |
agccaatataccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacgtaatggtagaagataaagga |
268 |
Q |
| |
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|||||| || |||||||||||||||| |||||||| ||||||||| | || | ||| |||| || ||| | |||||| |||| |||| || | ||| |
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| T |
37315765 |
agccaaaattccaaacccttgcatagcaaaaaccgaagctataaacgcgccacgagtctttttgttggcatattcagacataatagtagctgaaagaggg |
37315864 |
T |
|
| Q |
269 |
taatcaccaccaattccaagccctaagaagaatctaaagaaaccaagag |
317 |
Q |
| |
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|||||||||||||| |||| |||| ||||||||||||||| ||||| |
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|
| T |
37315865 |
taatcaccaccaataccaaaacctagccagaatctaaagaaacaaagag |
37315913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 33109402 - 33109294
Alignment:
| Q |
179 |
ccaaacccttgcatagaaaaaaccgcagctataaaagaacctcttgtccttttatttgcaaactcagacgtaatggtagaagataaaggataatcaccac |
278 |
Q |
| |
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||||| |||||||||| ||| || ||||| ||||||| |||| ||| | || || ||| |||||||| |||| |||| ||| | ||| |||||||||| |
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| T |
33109402 |
ccaaatccttgcatagcaaacactgcagcgataaaagctcctcgcgtcttcttgttcgcatactcagacataattgtagcagaaagagggtaatcaccac |
33109303 |
T |
|
| Q |
279 |
caattccaa |
287 |
Q |
| |
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||||||||| |
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|
| T |
33109302 |
caattccaa |
33109294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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