View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5974_low_8 (Length: 253)
Name: NF5974_low_8
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5974_low_8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 2855251 - 2854999
Alignment:
| Q |
1 |
tatattaataaaggtatggttggttatttcttgacaatatcaaaggaaatttcttgttttcttaattccaacataaatggtgtctatttaattgttctat |
100 |
Q |
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| T |
2855251 |
tatattaataaaggtatggttggttatttcttgacaatatcaaaggaaatttcttgttttcttaattccaacataaatggtgtctatttagttgttctat |
2855152 |
T |
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| Q |
101 |
ggtcatggtcatgtaatgttggcctgctttttcttgtttgtttctgctttgattctgtcttcaatatgttattatatttgtgattttttgggtaggattt |
200 |
Q |
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| T |
2855151 |
ggtcatggtcatgtaatgttggcctgctttttcttgtttgtttatgctttgattctgtcttcaatatgttattatatttgtgattttttgggtaggattt |
2855052 |
T |
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| Q |
201 |
gtggtatttgaaaattggacagatatttttcagttgtttcctagaagttgtgt |
253 |
Q |
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| T |
2855051 |
gtggtatttgaaaattggacagatatttttcagttgtttcctagaagttgtgt |
2854999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 2850224 - 2850141
Alignment:
| Q |
81 |
tgtctatttaattgttctatggtcatggtcatgtaatgttggcctgcttttt-cttgtttgtttctgctttgattctgtcttcaa |
164 |
Q |
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| T |
2850224 |
tgtctgtttagttgtgctatggtcaaggtcatgta-tgttggcctgcttttttcttgtctgtttctgctttgattttgtcttcaa |
2850141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 2850828 - 2850787
Alignment:
| Q |
21 |
tggttatttcttgacaatatcaaaggaaatttcttgttttct |
62 |
Q |
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| T |
2850828 |
tggttatttcttgacactatcaaagaaaatttcttgttttct |
2850787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10477197 - 10477032
Alignment:
| Q |
1 |
tatattaataaaggtatggttggttatttcttgacaatatcaaaggaaatttc-ttgttttcttaattccaacataaatgg--tgtctatttaattgttc |
97 |
Q |
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|||| ||||||| |||| || ||||||||||||||||||||||||||| ||| ||||||| | ||||||||||||||||| | ||| ||| ||||| |
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| T |
10477197 |
tataataataaaaatatgctttgttatttcttgacaatatcaaaggaaagttctttgttttatgaattccaacataaatggaatttctttttggttgttt |
10477098 |
T |
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| Q |
98 |
tatggtcatggtcatgtaatgttggcctg-ctttttcttgtttgtttctgctttgattctgtcttcaatat |
167 |
Q |
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| T |
10477097 |
tatagtcat-----tgtcatgttagcctgcctttttcttgtctgtttctggtttgattttgtcttgaatat |
10477032 |
T |
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