View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-1 (Length: 1035)

Name: NF5975-Insertion-1
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-1
NF5975-Insertion-1
[»] chr7 (8 HSPs)
chr7 (19-728)||(42275411-42276121)
chr7 (879-1007)||(42276256-42276383)
chr7 (696-728)||(6822563-6822595)
chr7 (697-728)||(48145457-48145488)
chr7 (698-728)||(33212042-33212072)
chr7 (696-730)||(47012609-47012643)
chr7 (691-724)||(34992369-34992402)
chr7 (697-730)||(42467203-42467236)
[»] chr3 (8 HSPs)
chr3 (691-728)||(37894284-37894321)
chr3 (696-728)||(11335343-11335375)
chr3 (697-728)||(49761227-49761258)
chr3 (697-728)||(51032665-51032696)
chr3 (696-730)||(349452-349486)
chr3 (698-728)||(48944751-48944781)
chr3 (701-730)||(41369600-41369629)
chr3 (697-730)||(47742283-47742316)
[»] scaffold0024 (1 HSPs)
scaffold0024 (692-724)||(60463-60495)
[»] chr8 (12 HSPs)
chr8 (696-728)||(67202-67234)
chr8 (696-728)||(40719684-40719716)
chr8 (696-728)||(43715873-43715905)
chr8 (695-726)||(1248250-1248281)
chr8 (696-726)||(999301-999331)
chr8 (696-726)||(11584094-11584124)
chr8 (696-730)||(12655920-12655954)
chr8 (698-728)||(25830287-25830317)
chr8 (698-728)||(31806299-31806329)
chr8 (696-730)||(43286002-43286036)
chr8 (697-730)||(1158374-1158407)
chr8 (696-725)||(22836183-22836212)
[»] chr6 (7 HSPs)
chr6 (698-730)||(27102115-27102147)
chr6 (698-730)||(27143937-27143969)
chr6 (696-726)||(15666816-15666846)
chr6 (696-730)||(16368086-16368120)
chr6 (696-726)||(32729887-32729917)
chr6 (697-730)||(2822221-2822254)
chr6 (695-724)||(26391330-26391359)
[»] chr4 (10 HSPs)
chr4 (696-728)||(1562577-1562609)
chr4 (697-728)||(32696830-32696861)
chr4 (697-728)||(40755920-40755951)
chr4 (698-728)||(3968885-3968915)
chr4 (698-728)||(29407067-29407097)
chr4 (698-728)||(33776854-33776884)
chr4 (690-723)||(3286810-3286843)
chr4 (697-730)||(9472552-9472585)
chr4 (695-728)||(11546943-11546976)
chr4 (695-724)||(35037606-35037635)
[»] chr2 (9 HSPs)
chr2 (696-728)||(6336250-6336282)
chr2 (692-724)||(6666014-6666046)
chr2 (698-730)||(21738655-21738687)
chr2 (695-730)||(24766149-24766184)
chr2 (698-728)||(11980651-11980681)
chr2 (698-728)||(31635851-31635881)
chr2 (695-724)||(694277-694306)
chr2 (697-726)||(14871639-14871668)
chr2 (691-720)||(19668232-19668261)
[»] chr1 (12 HSPs)
chr1 (688-724)||(23554741-23554777)
chr1 (697-728)||(12999863-12999894)
chr1 (697-728)||(18541092-18541123)
chr1 (692-723)||(24158644-24158675)
chr1 (698-728)||(33076119-33076149)
chr1 (696-726)||(35848410-35848440)
chr1 (696-726)||(52233264-52233294)
chr1 (697-730)||(26501294-26501327)
chr1 (691-724)||(29489404-29489437)
chr1 (689-730)||(36750522-36750563)
chr1 (691-724)||(40612107-40612140)
chr1 (695-724)||(46903478-46903507)
[»] chr5 (8 HSPs)
chr5 (693-724)||(14914367-14914398)
chr5 (696-730)||(372423-372457)
chr5 (698-728)||(22098255-22098285)
chr5 (696-726)||(33393632-33393662)
chr5 (698-728)||(36416103-36416133)
chr5 (697-730)||(6940189-6940222)
chr5 (695-724)||(14523009-14523038)
chr5 (695-724)||(29765827-29765856)
[»] scaffold0019 (1 HSPs)
scaffold0019 (691-724)||(72359-72392)
[»] scaffold0003 (1 HSPs)
scaffold0003 (697-726)||(337117-337146)


Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 19 - 728
Target Start/End: Original strand, 42275411 - 42276121
Alignment:
Q  19 tggtttatatagtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaagtttataatgaacctgttgaggttctgaattggagcgttgatgg 118  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42275411 tggtttatttagtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaaatttataatgaacctgttgaggttctgaattggagcgttgatgg 42275510  T
Q  119 ggagtgatgatgagctgactagctggttgacgaacaaaattgttttcttgagacattagaggttgtgggaacaaaaggaagcatatagtttgcaagagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42275511 ggagtgatgatgagctgactagctggttgacgaacaaaattgttttcttgagacattagaggttgtgggaacaaaaggaagcatatagtttgcaagagga 42275610  T
Q  219 ttgggaacataactagagactttgtgcattttgccatcaagttgttttggcttagacttgtacaaattggtgcaatttttgagctaagagtaggtttctt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42275611 ttgggaacataactagagactttgtgcattttgccatcaagttgttttggcttagacttgtacaa-ttggtgcaatttttgagctaagagtaggtttctt 42275709  T
Q  319 taaatgaagttgcggtaggaagagaagagaatatggaaagcatcaaaatatgatactacattacgtgcaggttgttccaatggctttgaagtttgaagaa 418  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42275710 taaatggagttgcggtaggaagagaagagaatatggaaagcatcaaaatatgatactacattacgtgcaggttgttgcaatggctttgaagtttgaagaa 42275809  T
Q  419 gatctgtgacaatctattgtcttaaagcaaggaccacacgctttattgtacttgctttctattgcctttgccaatttggacaatattattggacacgtat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42275810 gatctgtgacaatctattgtcttaaagcaaggaccacacgctttattgtacttgctttctattgcctttgccaatttggacaatattattggacacgtat 42275909  T
Q  519 ggatgcctacaaattacatgtcggtattcttatttacaatgttcaacttctcatttatgcagtatggaatcaacttagactatcacaaaattagtagaat 618  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42275910 ggatgcctacaaattacatgtcggtattcttatttacaaggttgaacttctcatttatgcagtatggaatcaacttagactatcacaaaattagtagaat 42276009  T
Q  619 atccttttctannnnnnncttcttgtgtaaatcggataggatagggccacgtgatgagaca--gctctctcatattttcaagagaaatgatatttgtaca 716  Q
    |||||||||||       |||||||||||||||||||||||||||||||| ||||||||||   |||||||||||||| |||||||||||||||||||||    
T  42276010 atccttttctatttttttcttcttgtgtaaatcggataggatagggccacatgatgagacacctctctctcatatttttaagagaaatgatatttgtaca 42276109  T
Q  717 accattttctaa 728  Q
    || |||||||||    
T  42276110 actattttctaa 42276121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 879 - 1007
Target Start/End: Original strand, 42276256 - 42276383
Alignment:
Q  879 cttgtagagacgaggttatatcatcaatggtgctcttggatt-aaaattagttaatttgatacaccgcccgtcttaatttattattacaaaaat-gattg 976  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |  ||||    
T  42276256 cttgtagagacgaggttatatcatcaat-gtgctcttggattaaaaattagttaatttgataca-cgcccgtcttaaattattattacaaaattaaattg 42276353  T
Q  977 gatttacaatttaaaatttatatttggaatt 1007  Q
     |||||||| |||||| ||||||||| ||||    
T  42276354 aatttacaa-ttaaaaattatatttgaaatt 42276383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 728
Target Start/End: Complemental strand, 6822595 - 6822563
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||||    
T  6822595 aagagaaatgatatttgtacaaccattttctaa 6822563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 728
Target Start/End: Original strand, 48145457 - 48145488
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||||||||||||||||||    
T  48145457 agagaaatgatatttgtacaaccattttctaa 48145488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Original strand, 33212042 - 33212072
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  33212042 gagaaatgatatttgtacaaccattttctaa 33212072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 730
Target Start/End: Complemental strand, 47012643 - 47012609
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||| ||||||||||||    
T  47012643 aagagaaatgatatttgtacaatcattttctaata 47012609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 691 - 724
Target Start/End: Complemental strand, 34992402 - 34992369
Alignment:
Q  691 ttttcaagagaaatgatatttgtacaaccatttt 724  Q
    |||| |||||||||||||||||||||||||||||    
T  34992402 ttttaaagagaaatgatatttgtacaaccatttt 34992369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 730
Target Start/End: Original strand, 42467203 - 42467236
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||| |||||    
T  42467203 agagaaatgatatttgtacaaccattttttaata 42467236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 691 - 728
Target Start/End: Complemental strand, 37894321 - 37894284
Alignment:
Q  691 ttttcaagagaaatgatatttgtacaaccattttctaa 728  Q
    |||| |||||||||||||||||||||||||||||||||    
T  37894321 ttttaaagagaaatgatatttgtacaaccattttctaa 37894284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 728
Target Start/End: Complemental strand, 11335375 - 11335343
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||||    
T  11335375 aagagaaatgatatttgtacaaccattttctaa 11335343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 728
Target Start/End: Complemental strand, 49761258 - 49761227
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||||||||||||||||||    
T  49761258 agagaaatgatatttgtacaaccattttctaa 49761227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 728
Target Start/End: Complemental strand, 51032696 - 51032665
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||||||||||||||||||    
T  51032696 agagaaatgatatttgtacaaccattttctaa 51032665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 730
Target Start/End: Complemental strand, 349486 - 349452
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaata 730  Q
    ||||||||||||||||||||||||||||| |||||    
T  349486 aagagaaatgatatttgtacaaccattttataata 349452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Complemental strand, 48944781 - 48944751
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  48944781 gagaaatgatatttgtacaaccattttctaa 48944751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 701 - 730
Target Start/End: Original strand, 41369600 - 41369629
Alignment:
Q  701 aaatgatatttgtacaaccattttctaata 730  Q
    ||||||||||||||||||||||||||||||    
T  41369600 aaatgatatttgtacaaccattttctaata 41369629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 730
Target Start/End: Original strand, 47742283 - 47742316
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaata 730  Q
    ||||||||||||||||||||||||||| ||||||    
T  47742283 agagaaatgatatttgtacaaccatttcctaata 47742316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 692 - 724
Target Start/End: Original strand, 60463 - 60495
Alignment:
Q  692 tttcaagagaaatgatatttgtacaaccatttt 724  Q
    |||||||||||||||||||||||||||||||||    
T  60463 tttcaagagaaatgatatttgtacaaccatttt 60495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 728
Target Start/End: Complemental strand, 67234 - 67202
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||||    
T  67234 aagagaaatgatatttgtacaaccattttctaa 67202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 728
Target Start/End: Complemental strand, 40719716 - 40719684
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||||    
T  40719716 aagagaaatgatatttgtacaaccattttctaa 40719684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 728
Target Start/End: Original strand, 43715873 - 43715905
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||||    
T  43715873 aagagaaatgatatttgtacaaccattttctaa 43715905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 726
Target Start/End: Original strand, 1248250 - 1248281
Alignment:
Q  695 caagagaaatgatatttgtacaaccattttct 726  Q
    ||||||||||||||||||||||||||||||||    
T  1248250 caagagaaatgatatttgtacaaccattttct 1248281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 726
Target Start/End: Complemental strand, 999331 - 999301
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttct 726  Q
    |||||||||||||||||||||||||||||||    
T  999331 aagagaaatgatatttgtacaaccattttct 999301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 726
Target Start/End: Original strand, 11584094 - 11584124
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttct 726  Q
    |||||||||||||||||||||||||||||||    
T  11584094 aagagaaatgatatttgtacaaccattttct 11584124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 730
Target Start/End: Original strand, 12655920 - 12655954
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaata 730  Q
    ||||||||||||||||||||||||||||| |||||    
T  12655920 aagagaaatgatatttgtacaaccattttataata 12655954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Complemental strand, 25830317 - 25830287
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  25830317 gagaaatgatatttgtacaaccattttctaa 25830287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Original strand, 31806299 - 31806329
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  31806299 gagaaatgatatttgtacaaccattttctaa 31806329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 730
Target Start/End: Complemental strand, 43286036 - 43286002
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaata 730  Q
    ||||||||||||||||| |||||||||||||||||    
T  43286036 aagagaaatgatatttggacaaccattttctaata 43286002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 730
Target Start/End: Complemental strand, 1158407 - 1158374
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||| |||||||||    
T  1158407 agagaaatgatatttgtacaaccaatttctaata 1158374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 696 - 725
Target Start/End: Complemental strand, 22836212 - 22836183
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttc 725  Q
    ||||||||||||||||||||||||||||||    
T  22836212 aagagaaatgatatttgtacaaccattttc 22836183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 698 - 730
Target Start/End: Original strand, 27102115 - 27102147
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||||||||    
T  27102115 gagaaatgatatttgtacaaccattttctaata 27102147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 698 - 730
Target Start/End: Original strand, 27143937 - 27143969
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||||||||    
T  27143937 gagaaatgatatttgtacaaccattttctaata 27143969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 726
Target Start/End: Complemental strand, 15666846 - 15666816
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttct 726  Q
    |||||||||||||||||||||||||||||||    
T  15666846 aagagaaatgatatttgtacaaccattttct 15666816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 730
Target Start/End: Complemental strand, 16368120 - 16368086
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaata 730  Q
    ||||||||||||||||||||||||||||| |||||    
T  16368120 aagagaaatgatatttgtacaaccattttataata 16368086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 726
Target Start/End: Original strand, 32729887 - 32729917
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttct 726  Q
    |||||||||||||||||||||||||||||||    
T  32729887 aagagaaatgatatttgtacaaccattttct 32729917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 730
Target Start/End: Original strand, 2822221 - 2822254
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||| |||||    
T  2822221 agagaaatgatatttgtacaaccattttataata 2822254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 724
Target Start/End: Complemental strand, 26391359 - 26391330
Alignment:
Q  695 caagagaaatgatatttgtacaaccatttt 724  Q
    ||||||||||||||||||||||||||||||    
T  26391359 caagagaaatgatatttgtacaaccatttt 26391330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 728
Target Start/End: Complemental strand, 1562609 - 1562577
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||||    
T  1562609 aagagaaatgatatttgtacaaccattttctaa 1562577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 728
Target Start/End: Complemental strand, 32696861 - 32696830
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||||||||||||||||||    
T  32696861 agagaaatgatatttgtacaaccattttctaa 32696830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 728
Target Start/End: Original strand, 40755920 - 40755951
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||||||||||||||||||    
T  40755920 agagaaatgatatttgtacaaccattttctaa 40755951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Original strand, 3968885 - 3968915
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  3968885 gagaaatgatatttgtacaaccattttctaa 3968915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Complemental strand, 29407097 - 29407067
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  29407097 gagaaatgatatttgtacaaccattttctaa 29407067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Complemental strand, 33776884 - 33776854
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  33776884 gagaaatgatatttgtacaaccattttctaa 33776854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 690 - 723
Target Start/End: Original strand, 3286810 - 3286843
Alignment:
Q  690 attttcaagagaaatgatatttgtacaaccattt 723  Q
    ||||| ||||||||||||||||||||||||||||    
T  3286810 attttaaagagaaatgatatttgtacaaccattt 3286843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 730
Target Start/End: Complemental strand, 9472585 - 9472552
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||| |||||||||||    
T  9472585 agagaaatgatatttgtacaactattttctaata 9472552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 728
Target Start/End: Complemental strand, 11546976 - 11546943
Alignment:
Q  695 caagagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||| ||||||||||||||||    
T  11546976 caagagaaatgatatttttacaaccattttctaa 11546943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 35037606 - 35037635
Alignment:
Q  695 caagagaaatgatatttgtacaaccatttt 724  Q
    ||||||||||||||||||||||||||||||    
T  35037606 caagagaaatgatatttgtacaaccatttt 35037635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 728
Target Start/End: Original strand, 6336250 - 6336282
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||||    
T  6336250 aagagaaatgatatttgtacaaccattttctaa 6336282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 692 - 724
Target Start/End: Original strand, 6666014 - 6666046
Alignment:
Q  692 tttcaagagaaatgatatttgtacaaccatttt 724  Q
    |||||||||||||||||||||||||||||||||    
T  6666014 tttcaagagaaatgatatttgtacaaccatttt 6666046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 698 - 730
Target Start/End: Complemental strand, 21738687 - 21738655
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||||||||    
T  21738687 gagaaatgatatttgtacaaccattttctaata 21738655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 730
Target Start/End: Original strand, 24766149 - 24766184
Alignment:
Q  695 caagagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||||| |||||    
T  24766149 caagagaaatgatatttgtacaaccattttttaata 24766184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Original strand, 11980651 - 11980681
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  11980651 gagaaatgatatttgtacaaccattttctaa 11980681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Complemental strand, 31635881 - 31635851
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  31635881 gagaaatgatatttgtacaaccattttctaa 31635851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 694277 - 694306
Alignment:
Q  695 caagagaaatgatatttgtacaaccatttt 724  Q
    ||||||||||||||||||||||||||||||    
T  694277 caagagaaatgatatttgtacaaccatttt 694306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 726
Target Start/End: Original strand, 14871639 - 14871668
Alignment:
Q  697 agagaaatgatatttgtacaaccattttct 726  Q
    ||||||||||||||||||||||||||||||    
T  14871639 agagaaatgatatttgtacaaccattttct 14871668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 691 - 720
Target Start/End: Complemental strand, 19668261 - 19668232
Alignment:
Q  691 ttttcaagagaaatgatatttgtacaacca 720  Q
    ||||||||||||||||||||||||||||||    
T  19668261 ttttcaagagaaatgatatttgtacaacca 19668232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 688 - 724
Target Start/End: Original strand, 23554741 - 23554777
Alignment:
Q  688 atattttcaagagaaatgatatttgtacaaccatttt 724  Q
    ||||||| |||||||||||||||||||||||||||||    
T  23554741 atatttttaagagaaatgatatttgtacaaccatttt 23554777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 728
Target Start/End: Complemental strand, 12999894 - 12999863
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||||||||||||||||||    
T  12999894 agagaaatgatatttgtacaaccattttctaa 12999863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 728
Target Start/End: Complemental strand, 18541123 - 18541092
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaa 728  Q
    ||||||||||||||||||||||||||||||||    
T  18541123 agagaaatgatatttgtacaaccattttctaa 18541092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 723
Target Start/End: Original strand, 24158644 - 24158675
Alignment:
Q  692 tttcaagagaaatgatatttgtacaaccattt 723  Q
    ||||||||||||||||||||||||||||||||    
T  24158644 tttcaagagaaatgatatttgtacaaccattt 24158675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Original strand, 33076119 - 33076149
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  33076119 gagaaatgatatttgtacaaccattttctaa 33076149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 726
Target Start/End: Original strand, 35848410 - 35848440
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttct 726  Q
    |||||||||||||||||||||||||||||||    
T  35848410 aagagaaatgatatttgtacaaccattttct 35848440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 726
Target Start/End: Complemental strand, 52233294 - 52233264
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttct 726  Q
    |||||||||||||||||||||||||||||||    
T  52233294 aagagaaatgatatttgtacaaccattttct 52233264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 730
Target Start/End: Original strand, 26501294 - 26501327
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||| |||||    
T  26501294 agagaaatgatatttgtacaaccattttgtaata 26501327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 691 - 724
Target Start/End: Complemental strand, 29489437 - 29489404
Alignment:
Q  691 ttttcaagagaaatgatatttgtacaaccatttt 724  Q
    |||| |||||||||||||||||||||||||||||    
T  29489437 tttttaagagaaatgatatttgtacaaccatttt 29489404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 730
Target Start/End: Complemental strand, 36750563 - 36750522
Alignment:
Q  689 tattttcaagagaaatgatatttgtacaaccattttctaata 730  Q
    |||||| ||||||||||||||||||||||| |||| ||||||    
T  36750563 tattttaaagagaaatgatatttgtacaactatttcctaata 36750522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 691 - 724
Target Start/End: Original strand, 40612107 - 40612140
Alignment:
Q  691 ttttcaagagaaatgatatttgtacaaccatttt 724  Q
    |||| |||||||||||||||||||||||||||||    
T  40612107 ttttaaagagaaatgatatttgtacaaccatttt 40612140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 46903478 - 46903507
Alignment:
Q  695 caagagaaatgatatttgtacaaccatttt 724  Q
    ||||||||||||||||||||||||||||||    
T  46903478 caagagaaatgatatttgtacaaccatttt 46903507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 724
Target Start/End: Original strand, 14914367 - 14914398
Alignment:
Q  693 ttcaagagaaatgatatttgtacaaccatttt 724  Q
    ||||||||||||||||||||||||||||||||    
T  14914367 ttcaagagaaatgatatttgtacaaccatttt 14914398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 730
Target Start/End: Complemental strand, 372457 - 372423
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttctaata 730  Q
    ||||||||||||||||||||||||||||| |||||    
T  372457 aagagaaatgatatttgtacaaccattttataata 372423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Original strand, 22098255 - 22098285
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  22098255 gagaaatgatatttgtacaaccattttctaa 22098285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 726
Target Start/End: Original strand, 33393632 - 33393662
Alignment:
Q  696 aagagaaatgatatttgtacaaccattttct 726  Q
    |||||||||||||||||||||||||||||||    
T  33393632 aagagaaatgatatttgtacaaccattttct 33393662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 728
Target Start/End: Complemental strand, 36416133 - 36416103
Alignment:
Q  698 gagaaatgatatttgtacaaccattttctaa 728  Q
    |||||||||||||||||||||||||||||||    
T  36416133 gagaaatgatatttgtacaaccattttctaa 36416103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 730
Target Start/End: Complemental strand, 6940222 - 6940189
Alignment:
Q  697 agagaaatgatatttgtacaaccattttctaata 730  Q
    |||||||||||||||||||||||||||| |||||    
T  6940222 agagaaatgatatttgtacaaccattttataata 6940189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 724
Target Start/End: Complemental strand, 14523038 - 14523009
Alignment:
Q  695 caagagaaatgatatttgtacaaccatttt 724  Q
    ||||||||||||||||||||||||||||||    
T  14523038 caagagaaatgatatttgtacaaccatttt 14523009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 29765827 - 29765856
Alignment:
Q  695 caagagaaatgatatttgtacaaccatttt 724  Q
    ||||||||||||||||||||||||||||||    
T  29765827 caagagaaatgatatttgtacaaccatttt 29765856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 691 - 724
Target Start/End: Original strand, 72359 - 72392
Alignment:
Q  691 ttttcaagagaaatgatatttgtacaaccatttt 724  Q
    ||||| ||||||||||||||||||||||||||||    
T  72359 ttttctagagaaatgatatttgtacaaccatttt 72392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 697 - 726
Target Start/End: Original strand, 337117 - 337146
Alignment:
Q  697 agagaaatgatatttgtacaaccattttct 726  Q
    ||||||||||||||||||||||||||||||    
T  337117 agagaaatgatatttgtacaaccattttct 337146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University