View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5975-Insertion-10 (Length: 560)
Name: NF5975-Insertion-10
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975-Insertion-10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 66 - 560
Target Start/End: Complemental strand, 27169372 - 27168878
Alignment:
| Q |
66 |
tgagcaataaatttgagagagacaaaaaacaatgcagattttgcatacacaactaggaaaaactctattttccccttaaagttctactaaaaatgaaagg |
165 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27169372 |
tgagcaataaatttgagagagagaaaaaacaatgcagattttgcatatccaactaggaaaaactctattttccccttaaagttctactaaaaatgaaagg |
27169273 |
T |
|
| Q |
166 |
aatcagaattgaagcattcagttgtaggttctgcactttgcagatttaaaatatcagcctatgttaactctttgcagatttaaaatatcaatctatttta |
265 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27169272 |
aatcaaaattgaagcattcagttgtaggttctgcactttgcagatttaaaatatcaatctatgttaactctttgcagatttaaaatatcaatctatttta |
27169173 |
T |
|
| Q |
266 |
actaaatctatgtgttcatgctcaatgaaaccgtgaataaataagtcgacctggaattaagcaggtaccaagatgaatggtgatgttactcttaagattt |
365 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27169172 |
actaaatctatgtgttcatgctcaattaaaccgtgaataaataagtcgacctggaattaagcaggtaccaagatgaatggtgatgttactcttaagattt |
27169073 |
T |
|
| Q |
366 |
gtaatcatcttgtattgaatggtctgaataaagaagagatacaatctagtatttatactacaaaaggaagcttgcgatgcaagcaatcaataagaaaaat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27169072 |
gtaatcatcttgtattgaatggtctgaataaagaagagatacaatctagtatttatactacaaaaggaagcttgcgatgcaagcaatcaataagaaaaat |
27168973 |
T |
|
| Q |
466 |
taactaagattaactacttttaactaaacaacatcaagaaggagataatttataattttattgcaacatttgacattaaactaaacaacacaaac |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27168972 |
taactaagattaactacttttaactaaacaacatcaagaaggagataatttataattttattgcaacatttgacattaaactaaacaacacaaac |
27168878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University