View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975-Insertion-13 (Length: 380)
Name: NF5975-Insertion-13
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975-Insertion-13 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Complemental strand, 2913496 - 2913125
Alignment:
| Q |
9 |
tgacggactttcatattgatttgagttgttatcctgtcgcatatattttgtcaacacagatatgagacacgtgattctataaaagaattaaaaaatgaat |
108 |
Q |
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| T |
2913496 |
tgacggactttcatattgatttgagtttttatcctgtcgcatatattttgtcaacacagatatgagacacgtgattctataaaagaattaaaaaatgaat |
2913397 |
T |
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| Q |
109 |
aggtttggcttgtgcctgctaaacaaatacctgctttagatgtatgaagatggttagagtgtaatattattttcatttgcgacttttggacaggtggtaa |
208 |
Q |
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| T |
2913396 |
aggtttggcttgtgcctgctaaacaaatacctgctttagatgtatgaagatggttagagtgtaatattattttcatttgcgacttttggacaggtggtaa |
2913297 |
T |
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| Q |
209 |
atatcatggaccgatgatttgcttctgttgtgcgataatcatgattaactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaattt |
308 |
Q |
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| T |
2913296 |
atatcatggaccgatgatttgcttctgttgtgcgataatcatgattaactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaattt |
2913197 |
T |
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| Q |
309 |
ctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctgcatgactttacggc |
380 |
Q |
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| T |
2913196 |
ctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctgcatgactttacggc |
2913125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 2919333 - 2919224
Alignment:
| Q |
255 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
354 |
Q |
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| T |
2919333 |
aactgatcacattg-ggttttatgctgaaattcaagaatgaagatattgaatttctcatggagtccaagaatttacagattttctttgaggatgagaagt |
2919235 |
T |
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| Q |
355 |
tcctaagttct |
365 |
Q |
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| T |
2919234 |
tcctcagttct |
2919224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 367
Target Start/End: Complemental strand, 37794201 - 37794093
Alignment:
| Q |
258 |
tgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcc |
357 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||| | ||||| || | |||||||| | || |||||| || ||| |
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| T |
37794201 |
tgatcacattg-ggttttgtgctgaaattcaagaatgaagatattgaatttctgatggaatccaaaaacatgcagattttctgggaagatgagaagctcc |
37794103 |
T |
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| Q |
358 |
taagttctgc |
367 |
Q |
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| T |
37794102 |
tcagttctgc |
37794093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 367
Target Start/End: Original strand, 3013947 - 3014058
Alignment:
| Q |
255 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
354 |
Q |
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|||| ||||||||| ||||||||| ||||| ||||||||||||||| ||| ||||| ||| | ||||||||| | |||||| |||||||||||||| |
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| T |
3013947 |
aactaatcacattg-ggttttgtgatgaaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagt |
3014045 |
T |
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| Q |
355 |
tcctaagttctgc |
367 |
Q |
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| T |
3014046 |
ttctcagttctgc |
3014058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 366
Target Start/End: Complemental strand, 2945476 - 2945366
Alignment:
| Q |
255 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
354 |
Q |
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|||| ||||||||| |||| |||| ||||| ||||||||||||||| ||| ||||| ||| | || |||||||| |||||| ||| |||||||||| |
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| T |
2945476 |
aactaatcacattg-ggttatgtgatgaaattcaagaatgaagaaattgattttctcatggaatcgaagaatttgcagattgaacatgcagatgaggagt |
2945378 |
T |
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| Q |
355 |
tcctaagttctg |
366 |
Q |
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|||| ||||||| |
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| T |
2945377 |
tcctcagttctg |
2945366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 2908508 - 2908394
Alignment:
| Q |
66 |
agatatgagacacgtgattctataaaagaattaaaaaatgaataggtttggcttgtgcctgctaaacaaatacctgctttagatgtatgaagatggt-ta |
164 |
Q |
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||||| || |||| ||||| |||| ||||| | ||||||| ||||||||| ||||||| |||||||||||||||| ||| ||| ||||||| || | |
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| T |
2908508 |
agataagaaacacttgattttatagaagaaatgaaaaatggataggtttg-cttgtgc----taaacaaatacctgctgtagctgtgtgaagatagtgca |
2908414 |
T |
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| Q |
165 |
gagtgtaatattattttcat |
184 |
Q |
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||||||||||||| |||||| |
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| T |
2908413 |
gagtgtaatattactttcat |
2908394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 2928818 - 2928724
Alignment:
| Q |
273 |
tttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctgc |
367 |
Q |
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||||| |||||| | ||||||||||||| ||| ||||| ||| | ||||||||| | |||||| |||||||||||||||||| |||||||| |
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| T |
2928818 |
tttgttctgaaatttaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagttcctcagttctgc |
2928724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 258 - 369
Target Start/End: Complemental strand, 28023214 - 28023104
Alignment:
| Q |
258 |
tgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcc |
357 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||| | |||||| |||||| | ||||| || ||||||||||| | |||||||||| || ||| |
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| T |
28023214 |
tgatcacattg-ggttttgtgctgaaattcaagaatgaagatattgaattcctgatggaatccaacaacttacagattttctgtgaggatgagaagctcc |
28023116 |
T |
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| Q |
358 |
taagttctgcat |
369 |
Q |
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| T |
28023115 |
tcagttctgcat |
28023104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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