View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-14 (Length: 375)

Name: NF5975-Insertion-14
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-14
NF5975-Insertion-14
[»] chr2 (1 HSPs)
chr2 (14-375)||(13917189-13917555)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 375
Target Start/End: Complemental strand, 13917555 - 13917189
Alignment:
Q  14 actcattattctttagatcttaaagattctatcagattgaataatcaaaatgattgatataaatagagttaaggagtactctaactcatatataaagcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  13917555 actcattattctttagatcttaaagattctatcagattgaatactcaaaatgattgatataaatagagttaaggagtactctaactca--tataaagcaa 13917458  T
Q  114 aaatgatatagagataatgag---tactctaactcatacataatgcaaagagtatataaacttaattaaagcgaatccaaaagacaacat-aaataattt 209  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13917457 aaatgatatagagataatgagtactactctaactcatacataatgcaaagagtatataaacttaattaaagcgaatccaaaagacaacataaaataattt 13917358  T
Q  210 gaatgtcaattgggaaaactatagcccttttctctcccttgagagatatcaaaccccatgaaataacttt--tataggtttaaccacgtccttgcaagtc 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13917357 gaatgtcaattggaaaaactatagcccttttctctcccttgagagatatcaaaccccatgaaataacttttatataggtttaaccacgtccttgcaagtc 13917258  T
Q  308 accttcttcccttc-aaaatgatctcatttttatggaaccaaattgaccaaacggtagacaatgaatct 375  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13917257 accttcttcccttcaaaaatgatctcatttttatggaaccaaattgaccaaacggtagacaatgaatct 13917189  T

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