View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-15 (Length: 375)

Name: NF5975-Insertion-15
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-15
NF5975-Insertion-15
[»] chr8 (1 HSPs)
chr8 (8-375)||(14751874-14752241)
[»] chr1 (3 HSPs)
chr1 (10-288)||(8534223-8534504)
chr1 (10-288)||(8599462-8599743)
chr1 (10-288)||(8613683-8613964)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 14751874 - 14752241
Alignment:
Q  8 acaaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgt 107  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14751874 acaaacccttcagtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgt 14751973  T
Q  108 tgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaac 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14751974 tgagcatagcgacgaatatgggtggcacaagcggtaggaacgtgactttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaac 14752073  T
Q  208 aacgattgttgaacctaaagagagaagcccagcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatat 307  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14752074 aacgattgttgaacctaaagagagaagcccagcgaacattgctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatat 14752173  T
Q  308 tcttcatggttaaacctagcacatacattttgaaccattgctatgaggtttctatgtgaagatactac 375  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14752174 tcttcgtggttaaacctagcacatacaatttgaaccattgctatgaggtttctatgtgaagatactac 14752241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 8534223 - 8534504
Alignment:
Q  10 aaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttg 109  Q
    ||||||||| || || ||||| || | |||||| |||||  | | |||||||||||| |||||||| || || ||||||||||| ||||| || |||||     
T  8534223 aaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttc 8534322  T
Q  110 agcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaa 209  Q
    ||||||||||| ||||| || |||||||| |||| ||| ||  || |||| || ||||| |||||||||||||| ||||| ||||| || ||||||||||    
T  8534323 agcatagcaaccaatatcgggggcacaagaggtaagaaggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaa 8534422  T
Q  210 cgattgttgaacctaaagagagaagccc---agcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaa 288  Q
    | || |||||||| | ||  ||||||||   ||| ||||  || ||||||||||| |||||||| ||||  || ||||||||    
T  8534423 ctatggttgaacccatagcaagaagccccatagcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaa 8534504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 8599462 - 8599743
Alignment:
Q  10 aaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttg 109  Q
    ||||||||| || || ||||| || | |||||| |||||  | | |||||||||||| |||||||| || || ||||||||||| ||||| || |||||     
T  8599462 aaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttc 8599561  T
Q  110 agcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaa 209  Q
    ||||||||||| ||||| || |||||||| |||| ||| ||  || |||| || ||||| |||||||||||||| ||||| ||||| || ||||||||||    
T  8599562 agcatagcaaccaatatcgggggcacaagaggtaagaaggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaa 8599661  T
Q  210 cgattgttgaacctaaagagagaagccc---agcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaa 288  Q
    | || |||||||| | ||  ||||||||   ||| ||||  || ||||||||||| |||||||| ||||  || ||||||||    
T  8599662 ctatggttgaacccatagcaagaagccccatagcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaa 8599743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 8613964 - 8613683
Alignment:
Q  10 aaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttg 109  Q
    ||||||||| || || ||||| || | |||||| |||||  | | |||||||||||| |||||||| || || ||||||||||| ||||| || |||||     
T  8613964 aaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttc 8613865  T
Q  110 agcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaa 209  Q
    || |||||||| ||||| || |||||||| |||| ||| ||  || |||| || |||||  ||||||||||||| ||||| ||||| || ||||||||||    
T  8613864 agtatagcaaccaatatcgggggcacaagaggtaagaaggttgctctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaa 8613765  T
Q  210 cgattgttgaacctaaagagagaagccc---agcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaa 288  Q
    | || |||||||| | ||  ||||||||   ||| ||||  || ||||||||||| |||||||| ||||  || ||||||||    
T  8613764 ctatggttgaacccatagcaagaagccccatagcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaa 8613683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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