View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-16 (Length: 354)

Name: NF5975-Insertion-16
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-16
NF5975-Insertion-16
[»] chr4 (24 HSPs)
chr4 (9-354)||(6614246-6614591)
chr4 (12-347)||(23158365-23158700)
chr4 (12-323)||(36279418-36279729)
chr4 (9-352)||(15649279-15649622)
chr4 (12-347)||(51872357-51872692)
chr4 (9-271)||(18116594-18116857)
chr4 (39-349)||(17838776-17839086)
chr4 (31-267)||(22340331-22340567)
chr4 (211-349)||(4723310-4723448)
chr4 (39-267)||(29123681-29123908)
chr4 (12-348)||(8110589-8110925)
chr4 (39-307)||(15705802-15706070)
chr4 (25-307)||(4303430-4303712)
chr4 (9-313)||(12915497-12915801)
chr4 (57-323)||(29192575-29192841)
chr4 (124-315)||(12290496-12290687)
chr4 (57-284)||(34994461-34994688)
chr4 (57-284)||(50694014-50694241)
chr4 (165-350)||(3621238-3621423)
chr4 (39-284)||(36950936-36951181)
chr4 (66-272)||(24059390-24059596)
chr4 (57-284)||(17469384-17469611)
chr4 (219-314)||(25134983-25135078)
chr4 (9-101)||(3621420-3621512)
[»] chr2 (11 HSPs)
chr2 (9-352)||(27914813-27915156)
chr2 (10-354)||(23384521-23384852)
chr2 (10-353)||(21963074-21963417)
chr2 (12-343)||(32349550-32349881)
chr2 (12-206)||(30275703-30275896)
chr2 (25-267)||(38938224-38938466)
chr2 (216-347)||(30274400-30274532)
chr2 (58-344)||(33937038-33937322)
chr2 (43-344)||(22298587-22298888)
chr2 (66-172)||(20007345-20007451)
chr2 (58-344)||(1258135-1258422)
[»] chr7 (22 HSPs)
chr7 (9-353)||(9403337-9403681)
chr7 (9-352)||(37075802-37076145)
chr7 (9-352)||(34981514-34981857)
chr7 (12-347)||(12121258-12121593)
chr7 (12-345)||(24819371-24819704)
chr7 (12-344)||(36575597-36575929)
chr7 (11-348)||(40891978-40892315)
chr7 (169-352)||(3483065-3483249)
chr7 (12-265)||(586538-586791)
chr7 (121-348)||(21607909-21608136)
chr7 (124-345)||(31252892-31253113)
chr7 (9-347)||(20705704-20706042)
chr7 (9-347)||(20873748-20874086)
chr7 (9-308)||(27278313-27278612)
chr7 (43-344)||(27868585-27868876)
chr7 (58-158)||(18815654-18815754)
chr7 (58-158)||(27990212-27990312)
chr7 (57-289)||(45649421-45649653)
chr7 (80-172)||(8457467-8457559)
chr7 (57-284)||(47553024-47553251)
chr7 (165-277)||(22866116-22866228)
chr7 (219-272)||(18815815-18815868)
[»] chr5 (11 HSPs)
chr5 (9-352)||(10462349-10462692)
chr5 (10-353)||(5825182-5825525)
chr5 (9-352)||(6678788-6679131)
chr5 (12-267)||(27891450-27891705)
chr5 (73-262)||(11265782-11265971)
chr5 (43-338)||(31962918-31963213)
chr5 (87-289)||(38931499-38931701)
chr5 (273-349)||(3998524-3998600)
chr5 (43-267)||(29150057-29150281)
chr5 (87-277)||(8895126-8895316)
chr5 (213-284)||(29322528-29322599)
[»] chr3 (21 HSPs)
chr3 (9-349)||(17154019-17154360)
chr3 (9-352)||(53152297-53152640)
chr3 (9-348)||(23571833-23572172)
chr3 (12-319)||(3514384-3514691)
chr3 (124-353)||(32945557-32945786)
chr3 (12-344)||(9818733-9819067)
chr3 (12-348)||(48547225-48547561)
chr3 (9-349)||(42462390-42462730)
chr3 (224-349)||(44879665-44879790)
chr3 (39-346)||(23602936-23603243)
chr3 (147-345)||(9246703-9246901)
chr3 (58-260)||(30737247-30737449)
chr3 (143-271)||(8542253-8542381)
chr3 (8-313)||(42459503-42459807)
chr3 (39-313)||(8594963-8595237)
chr3 (57-301)||(10753781-10754025)
chr3 (213-344)||(39633248-39633379)
chr3 (57-284)||(16663711-16663938)
chr3 (57-284)||(52196022-52196249)
chr3 (225-302)||(52962633-52962710)
chr3 (132-172)||(28393365-28393405)
[»] chr8 (6 HSPs)
chr8 (9-352)||(2959802-2960145)
chr8 (12-349)||(26077941-26078278)
chr8 (12-348)||(31423430-31423766)
chr8 (74-307)||(26390518-26390751)
chr8 (74-323)||(29529870-29530118)
chr8 (222-284)||(10802106-10802168)
[»] chr6 (9 HSPs)
chr6 (12-347)||(18295611-18295946)
chr6 (12-349)||(2893907-2894244)
chr6 (9-350)||(28605099-28605440)
chr6 (60-267)||(667016-667222)
chr6 (57-284)||(5391777-5392004)
chr6 (133-272)||(17227675-17227814)
chr6 (133-284)||(14223505-14223656)
chr6 (133-267)||(7218686-7218820)
chr6 (73-271)||(9759779-9759977)
[»] chr1 (13 HSPs)
chr1 (9-271)||(41343020-41343282)
chr1 (9-347)||(10003603-10003941)
chr1 (12-323)||(27029648-27029959)
chr1 (124-349)||(44753748-44753973)
chr1 (156-347)||(48759777-48759968)
chr1 (71-348)||(5556938-5557215)
chr1 (12-307)||(49369479-49369774)
chr1 (133-344)||(37666028-37666239)
chr1 (58-267)||(45757435-45757644)
chr1 (66-271)||(40392461-40392658)
chr1 (234-347)||(32152387-32152500)
chr1 (66-157)||(26995826-26995917)
chr1 (219-272)||(26995712-26995765)
[»] scaffold0041 (1 HSPs)
scaffold0041 (11-348)||(73969-74306)
[»] scaffold0032 (1 HSPs)
scaffold0032 (9-349)||(58608-58948)
[»] scaffold0003 (1 HSPs)
scaffold0003 (133-267)||(225060-225194)
[»] scaffold0289 (1 HSPs)
scaffold0289 (58-156)||(10928-11026)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 6614246 - 6614591
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614246 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 6614345  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614346 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 6614445  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6614446 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtttgttttttattattcttattggagacaaaac 6614545  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgggc 354  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  6614546 cctttaccttgtttaaatactattttgtaaagtcttttttttgggc 6614591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 23158365 - 23158700
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  23158365 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaa 23158464  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||||| |||    
T  23158465 agaattctatgaaagcttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 23158564  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||||||||| |||||||| |||||| | |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |    
T  23158565 ggaagttctacttgaaagagtcaaatttcaaacgttttggtggttgaaagctaactgcatcttgttcgttttttattattcttattggagaaaaaatcat 23158664  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    |||||||||||| | ||| |||||||||||||||||    
T  23158665 ttaccttgtttacagactgttttgtaaagtctgttt 23158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 36279418 - 36279729
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  36279418 ttatggcttatgctatcggattggttaggttttgttacggttttcaatggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaa 36279517  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  36279518 agaattatatgaaagcttttactattatttggatttcggtcttatatactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 36279617  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |    
T  36279618 ggaagttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgttttttattattcttattggagaaaaaatctt 36279717  T
Q  312 ttaccttgttta 323  Q
    ||||||||||||    
T  36279718 ttaccttgttta 36279729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 15649279 - 15649622
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| || |||||||||||||| |||||||||||||| |||||||| ||||    
T  15649279 cggttatggcttatgctatcagattggttaggttttgtcacggcgctcaatggaaacttatattcacatgctaatcagttttgtgcacttggaggattct 15649378  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||    
T  15649379 caaagcattctatgcaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttca 15649478  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  15649479 tatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 15649578  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    || ||| |||||||| | |||||| |||||||||||||||||||    
T  15649579 ccattatcttgtttacagactattgtgtaaagtctgttttttgg 15649622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 51872692 - 51872357
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| | ||||| ||||||||||||| ||| |||||||||||||    
T  51872692 ttatggcttatgctatcggattggttaggtttggttacagttcttaatggcaattcatatactcatgctaatcagttttgtggtctaggaggtttctcaa 51872593  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| ||||||||||||| |||| ||||| |||||| |||||| ||||||||| ||||||||| |||||||||||||||| |||    
T  51872592 agaattctatgaaagcttttactattatttggatatcggccttatatactatttggaaaaatcgcaacaggaggattttccaaaaccaaattgttctttt 51872493  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| | | || |||    
T  51872492 ggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggaaaaataatcct 51872393  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    ||||||| |||| | | | | |||||||||||||||    
T  51872392 ttaccttatttacagattgtgttgtaaagtctgttt 51872357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 18116594 - 18116857
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| | ||||||||||||||| || |||| ||||||||||| ||||||||||| ||||    
T  18116594 cggttatggcttttgctatcggattggcttggttttgttacggtttttaatggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttct 18116693  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttc-aaaaccaaattgttc 207  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||    
T  18116694 caaagaattctatgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggattttccaaaaaccaaattgttc 18116793  T
Q  208 atttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 271  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18116794 atttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 18116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 39 - 349
Target Start/End: Original strand, 17838776 - 17839086
Alignment:
Q  39 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 138  Q
    ||||||||||||||  |  |||||||||||||| ||||||| |||||||||||||||||||| || || |||||||||||  ||||||| || |||||||    
T  17838776 ggttttgttacggtgtttcatggcaatttatatacacatgctaatcagttttgtgctcttgggggcttttcaaagaattccatgaaagctttgtctatta 17838875  T
Q  139 tttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 238  Q
    ||||||||| ||| ||||||  ||| ||||||||||||||||||| |||||| |||||||| || | |||| | |||| ||||||||||||||| |||||    
T  17838876 tttggattttggttttatttgttatttggaaagatcgcaacatgaagattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaact 17838975  T
Q  239 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 338  Q
     ||||| ||||||||| ||||||| |||| |||  |||||  |||| ||||| | | |||||||||||| || |||  ||||||| | |||   ||||||    
T  17838976 tcaaactttttggtggatgaaagcaaacttcatcatgttcacttttgattatcccttttggagacaaaatcccttatgttgtttacagactgccttgtaa 17839075  T
Q  339 agtctgttttt 349  Q
     ||||||||||    
T  17839076 tgtctgttttt 17839086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 22340567 - 22340331
Alignment:
Q  31 attggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcatt 130  Q
    ||||||| ||||||||||||||  |  |||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||    
T  22340567 attggtttggttttgttacggtgtttcatggcaatttatatcctcatgctaatcagttttgtgctcttggaggtttttcaaagaattctatgaaagcttt 22340468  T
Q  131 ttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagg 230  Q
     |||||||||||||||| ||| ||||||  ||||||||||||||||||  ||| |||||| |||||| | || | |||| | |||| ||||||||||| |    
T  22340467 gtctattatttggattttggttttatttgttatatggaaagatcgcaatttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaag 22340368  T
Q  231 gtcaaactccaaacgttttggtggttgaaagctaact 267  Q
    || ||||| ||||| ||||||||| ||||||| ||||    
T  22340367 gttaaacttcaaactttttggtggatgaaagcaaact 22340331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 211 - 349
Target Start/End: Original strand, 4723310 - 4723448
Alignment:
Q  211 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 310  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||    
T  4723310 tggaagttcttattaaaagggtcaaacttcaaacgttttggtggttgaaggctaactacatcttgttcgtttttgattattcttattggagacaaaatcc 4723409  T
Q  311 tttaccttgtttaaatactattttgtaaagtctgttttt 349  Q
    ||||||||||||| | ||| |||||||||||||||||||    
T  4723410 tttaccttgtttacagactgttttgtaaagtctgttttt 4723448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 267
Target Start/End: Original strand, 29123681 - 29123908
Alignment:
Q  39 ggttttgttacggt-tctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatt 137  Q
    |||||||||||||| | |||| |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || ||||||    
T  29123681 ggttttgttacggtgtttcaa-ggcaatttatatcctcatgctaatcagttttgtgctcttggaggttt-tcaaagaattctatgaaagctttgtctatt 29123778  T
Q  138 atttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaac 237  Q
    |||||||||||||| ||||||  ||| ||||||||||||||  |||||||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||    
T  29123779 atttggatttcggttttatttgttatttggaaagatcgcaatttgaggattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaac 29123878  T
Q  238 tccaaacgttttggtggttgaaagctaact 267  Q
    | ||||| ||||||||| ||||||| ||||    
T  29123879 ttcaaactttttggtggatgaaagcaaact 29123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 8110925 - 8110589
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||  || ||||| ||||||| ||| |||||| |||  |  |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  8110925 ttatggctcttgatatcgaattggtttggtattgttaaggtgtttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaa 8110826  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    ||||||||  || ||| ||| ||||||| ||||||||||||||||||  ||| ||||| || ||||||| |||||||||||| |||||| |||  ||| |    
T  8110825 agaattctaggacagcttttactattatatggatttcggtcttatttgttatttggaaggaccgcaacaggaggatttttcagaaccaagttgaacatct 8110726  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
     |||| |||| |||||||||| ||||| || || | ||||||| |||||||  ||| |||    |||| |||| ||||| | | |||||||||||| |||    
T  8110725 cgaagctctttttgaaagggttaaacttcagacttattggtggctgaaagcagacttcatcactttcgcttttgattatcccttttggagacaaaatcct 8110626  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgtttt 348  Q
    |||| ||||||| | ||| || ||||| |||||||||    
T  8110625 ttacattgtttacagactgttgtgtaatgtctgtttt 8110589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 39 - 307
Target Start/End: Original strand, 15705802 - 15706070
Alignment:
Q  39 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 138  Q
    |||||||||||||| ||  |||||||||||||| | ||||| || || |||||||| ||||||| ||| ||||||| ||||  |||||| || ||||||     
T  15705802 ggttttgttacggtgcttcatggcaatttatatacccatgctaaccaattttgtgcccttggagatttttcaaagagttctacgaaagctttatctattg 15705901  T
Q  139 tttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 238  Q
    ||||||||||||| ||||||| ||| |||||||||||||| |||| |||||| |||||||| || | |||| | |||| ||||||||||||||| |||||    
T  15705902 tttggatttcggttttatttattatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaact 15706001  T
Q  239 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 307  Q
     ||||| ||||||||| |||||||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  15706002 tcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaa 15706070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 307
Target Start/End: Original strand, 4303430 - 4303712
Alignment:
Q  25 tatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaa 124  Q
    ||||| ||||| | ||||||||||||||  |  |||||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||| ||||  |||    
T  4303430 tatcgaattggcttggttttgttacggtgtttcatggcaatttatatacccatgctaatcaattttgtgcccttggaggtttttcaaagagttctacgaa 4303529  T
Q  125 agcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttctt 224  Q
    ||| || |||||| ||||||||||| | ||||||  ||| |||||||||||||| |||| |||||| |||||||| || | |||| | |||| |||||||    
T  4303530 agctttgtctattgtttggatttcgattttatttgttatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttctt 4303629  T
Q  225 gaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 307  Q
    |||||||| ||||| ||||| ||||||||| |||||||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  4303630 gaaagggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaa 4303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 12915801 - 12915497
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||  || ||||| | ||| | ||| ||||||||||| |  |||| |||||| || | ||||| ||||| ||||||||||| || || ||||    
T  12915801 cggttatggctcttggtatcgcagtggcttggtattgttacggttttacatggtaatttacatactcatgctaatcatttttgtgctctcggtggcttct 12915702  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||| ||  |||  |  ||| ||| ||||||||| |||||||||||||| |  |||||||||||||||||||| ||| ||||| ||||| ||  ||| |||    
T  12915701 caaggaggtctacgttagcgtttactattatttagatttcggtcttatatgttatatggaaagatcgcaacaggagaattttccaaaatcactttgatca 12915602  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | | |||| |||| | |||||||| ||||| ||||||| ||||||||||||||| |||| ||||   ||||||||| | |||   | ||||||||||||     
T  12915601 tctagaagctcttatggaaagggttaaacttcaaacgtattggtggttgaaagcaaacttcattacattcgtttttgactatcacttttggagacaaaat 12915502  T
Q  309 ccttt 313  Q
    |||||    
T  12915501 ccttt 12915497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 323
Target Start/End: Original strand, 29192575 - 29192841
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||| ||||||||||   ||| |||||||||||||| ||||| ||||| || ||| ||| ||  ||| ||||||||||||||||||| ||||    
T  29192575 aatggtaatttacattcacatgcttctcaattttgtgctcttgggggtttttcaaaaaactctatgacaggttttactattatttggatttcggttttat 29192674  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || | ||||||| | |||| ||| ||||||||  | ||  ||| | || | |||| ||| ||||||||||| |||||||||||||||||||||||    
T  29192675 tcgtcatttagaaagatagaaacaggagaatttttcagcatcattttgattatcttgaagctctacttgaaagggttaaactccaaacgttttggtggtt 29192774  T
Q  257 gaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 323  Q
    |||||| || |||||  |||||| |||| | ||| | ||||||||  |||| ||||||| |||||||    
T  29192775 gaaagcgaattacatcatgttcgattttgactatccctattggaggaaaaatcctttactttgttta 29192841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 315
Target Start/End: Complemental strand, 12290687 - 12290496
Alignment:
Q  124 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttct 223  Q
    |||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| || |  ||||||||||| ||||||| ||  ||| | |||| ||||      
T  12290687 aagcttttactattatttggatttcggtcttatttgttatttggaaagatcgaaatagaaggatttttcagaaccaaagtgaacatctcgaagctctttc 12290588  T
Q  224 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttac 315  Q
     |||||||| ||||| || || | ||||||||||||||| |||| |||  |||||  |||| | ||||| | ||||||||||||||||||||    
T  12290587 ggaaagggttaaacttcagacttattggtggttgaaagcaaacttcatcatgttcacttttgactattccttttggagacaaaaccctttac 12290496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 284
Target Start/End: Complemental strand, 34994688 - 34994461
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  34994688 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 34994589  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || ||||||||| | |||| ||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  34994588 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 34994489  T
Q  257 gaaagctaactacattttgttcgttttt 284  Q
    |||||| || ||||||||||||| ||||    
T  34994488 gaaagcgaattacattttgttcgatttt 34994461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 284
Target Start/End: Original strand, 50694014 - 50694241
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || | |  || |   ||| |  |||||||||||||||| ||||    
T  50694014 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtgtaggacatgttttacagttatttggatttcggttttat 50694113  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || ||||||||| | |||| ||| |||||||| || ||  ||| |||| | |||||||||||||||||||| ||||| ||||||||||||||| |    
T  50694114 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaaacttcaaacgttttggtggct 50694213  T
Q  257 gaaagctaactacattttgttcgttttt 284  Q
    |||||| || | |||| |||||| ||||    
T  50694214 gaaagcgaattgcattatgttcgatttt 50694241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 165 - 350
Target Start/End: Complemental strand, 3621423 - 3621238
Alignment:
Q  165 tggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 264  Q
    ||||||||||| |||| |||||||||||| ||||||| ||  ||| | |||| |||| |||||||||| ||||| || || | ||||||||||||||| |    
T  3621423 tggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagacttattggtggttgaaagcaa 3621324  T
Q  265 actacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttttt 350  Q
    |||   |  |||||| |||| | ||||||| |||||||||||||| ||||| ||||||| | ||| |  ||||| |||||||||||    
T  3621323 actttgtcatgttcgcttttgactattctttttggagacaaaaccatttacattgtttacagactgtcatgtaatgtctgtttttt 3621238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 284
Target Start/End: Complemental strand, 36951181 - 36950936
Alignment:
Q  39 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 138  Q
    |||||||||||   ||| ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||    
T  36951181 ggttttgttacaactctgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaaatctaggacaggatttacagtta 36951082  T
Q  139 tttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 238  Q
    | ||||| || || |||||    || ||||||||||| ||||  || |||||||| || ||  ||| |||| | |||| ||||||||||||| | |||||    
T  36951081 tctggatgtctgttttattcgtcatttggaaagatcgaaacagaagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaact 36950982  T
Q  239 ccaaacgttttggtggttgaaagctaactacattttgttcgttttt 284  Q
     ||||||||||||||| ||||||| || ||| || |||||| ||||    
T  36950981 tcaaacgttttggtggctgaaagcgaattacgttatgttcgatttt 36950936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 24059596 - 24059390
Alignment:
Q  66 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 165  Q
    |||||| | ||| ||||||||||||  |||||| |||| ||||||||||||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  24059596 ttatatgctcattcaaatcagttttaagctcttagagggttctcaaagaattcaaggacatcattctctattatttggatttcggtcttatttgttatct 24059497  T
Q  166 ggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 265  Q
    | ||||| || ||||  || |||||| | || ||  ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  24059496 gaaaagaccgtaacaatagaattttttataatcattttgatcagcttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 24059397  T
Q  266 ctacatt 272  Q
    |||||||    
T  24059396 ctacatt 24059390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 284
Target Start/End: Original strand, 17469384 - 17469611
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttcta-ttatttggatttcggtctta 155  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || ||  |||| || ||||||| ||||| |  |||    
T  17469384 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacagg-ttttatagttatttgaatttcagcttta 17469482  T
Q  156 tttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 255  Q
    ||    || ||||||||| | |||| ||| |||||||| || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||| |||||||||     
T  17469483 ttcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacattttggtggc 17469582  T
Q  256 tgaaagctaactacattttgttcgttttt 284  Q
    ||||||| || |||||| |||||| ||||    
T  17469583 tgaaagcgaattacattatgttcgatttt 17469611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 25135078 - 25134983
Alignment:
Q  219 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacccttta 314  Q
    ||||| |||| ||| |||| |||||| | ||||||||||||||| ||||||||| ||||||  ||  | ||||||| |||||| ||||| ||||||    
T  25135078 cttctcgaaaaggttaaacaccaaacttattggtggttgaaagcgaactacattatgttcgacttcgagtattctttttggaggcaaaatccttta 25134983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 3621512 - 3621420
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttgga 101  Q
    |||||||||||  || || || ||||||| ||| ||||||| ||  |  |||||||| ||| |||||||||  ||||||||||||||||||||    
T  3621512 cggttatggctcttgttaacgaattggtttggtattgttactgtgtttcatggcaatctattttcacatgctcatcagttttgtgctcttgga 3621420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 27914813 - 27915156
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27914813 cggttatggcttatgatatcagattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaaccagttttgtgctcttggaggtttct 27914912  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  27914913 caaagaattctttgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttca 27915012  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27915013 tttgaaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggagacaaaac 27915112  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    ||||||||||||||| | | ||||||||||||||||||||||||    
T  27915113 cctttaccttgtttacagaatattttgtaaagtctgttttttgg 27915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 23384852 - 23384521
Alignment:
Q  10 ggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23384852 ggttatggcttatgctatcgaattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtactcttggaggtttctc 23384753  T
Q  110 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  23384752 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcacaacaggaggatttttcaaaaccaaattgttcat 23384653  T
Q  210 ttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacc 309  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||             ||||||||||||||    
T  23384652 ttggaagttcttcttgaaagggtcaaactccaaatgttttggtggttgaaagctaactacatattgttcgttt-------------ttggagacaaaacc 23384566  T
Q  310 ctttaccttgtttaaatactattttgtaaagtctgttttttgggc 354  Q
    |||||||||||||| | ||||||||||||||||||||||||||||    
T  23384565 ctttaccttgtttacagactattttgtaaagtctgttttttgggc 23384521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 21963417 - 21963074
Alignment:
Q  10 ggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc 109  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  21963417 ggttatggcttatgctatcagattggttaggttttgtgacggttcttaatggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctc 21963318  T
Q  110 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcat 209  Q
    |||| ||| | || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  21963317 aaagcattttgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcat 21963218  T
Q  210 ttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacc 309  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  21963217 ctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaacc 21963118  T
Q  310 ctttaccttgtttaaatactattttgtaaagtctgttttttggg 353  Q
    |||||| ||||||| | |||||| ||||||||||||||||||||    
T  21963117 ctttacattgtttacagactattgtgtaaagtctgttttttggg 21963074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 32349881 - 32349550
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| |||||||||||||    
T  32349881 ttatggcttatgctatcggattggttaggatttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaa 32349782  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  32349781 agaattctatgaaagcttttactattatttggatttcggtcttatacactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 32349682  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    | | || || |||||||| |||||||| ||||||||||||| |||||||| ||||||||| |||||||||||| |||| ||||||||||||  ||| |||    
T  32349681 gaaggtgctacttgaaagagtcaaacttcaaacgttttggtagttgaaagttaactacatcttgttcgtttttgattactcttattggagaataaatcct 32349582  T
Q  312 ttaccttgtttaaatactattttgtaaagtct 343  Q
    |||||||||||| | ||| |||||||||||||    
T  32349581 ttaccttgtttacagactgttttgtaaagtct 32349550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 30275896 - 30275703
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| ||||| | |||||||||||    
T  30275896 ttatgacttatgttatcggattggttaggttttgttacggttctcaacggcaatttatatactcatgctaatcagttttgcgctctag-aggtttctcaa 30275798  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgtt 206  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||||| |||||||||||||||    
T  30275797 agaattctatgaaagcttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacaggagaattttccaaaaccaaattgtt 30275703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 25 - 267
Target Start/End: Complemental strand, 38938466 - 38938224
Alignment:
Q  25 tatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaa 124  Q
    ||||| ||||| | |||||||||| |||  | ||||||||||||||| ||||||| ||||| |||||||||||| |||| || |||||||||||| ||||    
T  38938466 tatcgaattggcttggttttgttatggtgtttaatggcaatttatatacacatgctaatcatttttgtgctcttagaggcttttcaaagaattctatgaa 38938367  T
Q  125 agcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttctt 224  Q
    ||| ||| |||||||||||||||| |||||||||  ||| ||||||||||||||||||| |||||| |||||||| || |  ||| | |||| |||||||    
T  38938366 agcttttactattatttggatttctgtcttatttgttatttggaaagatcgcaacatgatgattttccaaaaccatatggaccatcttgaagctcttctt 38938267  T
Q  225 gaaagggtcaaactccaaacgttttggtggttgaaagctaact 267  Q
    |||||||| ||||| ||||| |||||| |||||||||| ||||    
T  38938266 gaaagggttaaacttcaaactttttggcggttgaaagcaaact 38938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 216 - 347
Target Start/End: Complemental strand, 30274532 - 30274400
Alignment:
Q  216 gttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggag-acaaaacccttta 314  Q
    ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||    
T  30274532 gttctacttgaaagagtcaaacttcaaacattttggtggttgaaagctaactacatcttgttcgttttttattattcttattggagaaaaaaatccttta 30274433  T
Q  315 ccttgtttaaatactattttgtaaagtctgttt 347  Q
    ||||||||| | ||| |||||||||||||||||    
T  30274432 ccttgtttacagactgttttgtaaagtctgttt 30274400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 58 - 344
Target Start/End: Original strand, 33937038 - 33937322
Alignment:
Q  58 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 157  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| ||  ||  || || |||| || |||||||||||||||| |||||    
T  33937038 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaa--ctacgacaggatttactgttatttggatttcggttttatt 33937135  T
Q  158 tactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 257  Q
        || ||||||||| | |||| ||| |||||||| || ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  33937136 cgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttg 33937235  T
Q  258 aaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 344  Q
    ||||| || |||||  |||||| |||| | ||| | ||||||||| |||| |||||| |||||||| | |||  ||||||| |||||    
T  33937236 aaagcgaattacatcatgttcgattttgactatccctattggagaaaaaatcctttagcttgtttacagactgctttgtaatgtctg 33937322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 43 - 344
Target Start/End: Complemental strand, 22298888 - 22298587
Alignment:
Q  43 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 142  Q
    ||||||||||| |  |||| |||||| | |||||||| |  || |||||||||||||||||||||||||| || |||  || ||  ||| || | |||||    
T  22298888 ttgttacggttttacatggtaatttacactcacatgctacccaattttgtgctcttggaggtttctcaaaaaactctaggacaggctttactgtcatttg 22298789  T
Q  143 gatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 242  Q
    |||||||||  ||||    ||||| |||||| | |||| ||| ||||||||||| ||  ||| |||| | |||| ||| ||||||||||| |||||||||    
T  22298788 gatttcggttatattcgtcatatgaaaagattgaaacaggagaatttttcaaaatcactttgatcatcttgaagctctccttgaaagggttaaactccaa 22298689  T
Q  243 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtc 342  Q
    |||| ||||||||||||||| || |||||  |||| | |||| | ||| | ||||||||  |||| ||||||  ||||||| | ||| |||||||| |||    
T  22298688 acgtattggtggttgaaagcgaattacatcatgtttgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgttttgtaatgtc 22298589  T
Q  343 tg 344  Q
    ||    
T  22298588 tg 22298587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 172
Target Start/End: Complemental strand, 20007451 - 20007345
Alignment:
Q  66 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 165  Q
    |||||| | ||| ||||||| ||||||| ||||||||| |||||||| |||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  20007451 ttatatgctcattcaaatcaattttgtgttcttggagggttctcaaaaaattcaaggataacattctctattatttggatttcggtcttatttgttatct 20007352  T
Q  166 ggaaaga 172  Q
    |||||||    
T  20007351 ggaaaga 20007345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 344
Target Start/End: Complemental strand, 1258422 - 1258135
Alignment:
Q  58 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 157  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| || |||  || |  |||| || |||||||||||||||| |||||    
T  1258422 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggatttcggttttatt 1258323  T
Q  158 tactatatggaaagatcgcaacatgaggattttt-caaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
        || ||||||||| | |||| ||| |||||| || || ||  ||| |||| | |||| |||  |||||||||| |||||||||| || |||||||||    
T  1258322 cttcatttggaaagatagaaacaggagaattttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaatgtattggtggtt 1258223  T
Q  257 gaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 344  Q
    |||||| || |||||  || ||| |||| | ||| | ||||||||  |||| ||||||  ||||||| | |||  ||||||| |||||    
T  1258222 gaaagcgaattacatcatgctcgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgctttgtaatgtctg 1258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 353
Target Start/End: Original strand, 9403337 - 9403681
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9403337 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgcacttggaggtttct 9403436  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  9403437 caaagcattctttgaaagcattttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 9403536  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  9403537 tctggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 9403636  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttggg 353  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||    
T  9403637 cctttaccttgtttacagactattgtgtaaagtctgttttttggg 9403681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 37075802 - 37076145
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||| ||| ||||    
T  37075802 cggttatggcttatgctatcggattggttaggtattgttacggttctcaatgacaatttatattcacatgctaatcagttttgtgcacttgaaggattct 37075901  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||| ||||| || || | ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  37075902 caaagcattctgtgcaaactttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 37076001  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  37076002 tctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 37076101  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  37076102 cctttaccttgtttacagactattgtgtaaagtctgttttttgg 37076145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 34981857 - 34981514
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| || |||||||||||||| |||||||||||||| |||||||| ||||    
T  34981857 cggttatggcttatgctatcagattggttaggttttgtcacggcgctcaatggaaacttatattcacatgctaatcagttttgtgcacttggaggattct 34981758  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||    
T  34981757 caaagcattctatgcaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttca 34981658  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  34981657 tatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 34981558  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    || ||| |||||||| | |||||| |||||||||||||||||||    
T  34981557 ccattatcttgtttacagactattgtgtaaagtctgttttttgg 34981514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 12121593 - 12121258
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||| ||||||||||| ||||| || ||||||||||    
T  12121593 ttatggcttatgctatcggattggttaggtttggttacggttctcaatgacaatttatatactcatgctaatcagttttgcgctctaggcggtttctcaa 12121494  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| ||||||||||||| || | ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  12121493 agaattctatgaaagcttttactattatttggatctcagccttatatactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 12121394  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | || |||    
T  12121393 ggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcct 12121294  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    |||||||||||| | ||| | |||||||||||||||    
T  12121293 ttaccttgtttacagactgtgttgtaaagtctgttt 12121258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 24819704 - 24819371
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  24819704 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 24819605  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||| || || |||    
T  24819604 agaattctatgaaagcttttactatcatttggatttcggtcttatatactatatggaaagttcgcaacaggaggattttccaaaaccaaagtgctctttt 24819505  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||    
T  24819504 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcct 24819405  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgt 345  Q
    |||||||||||| | ||| |||||||||||||||    
T  24819404 ttaccttgtttacagactgttttgtaaagtctgt 24819371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 36575597 - 36575929
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  36575597 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 36575696  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| ||||||||| |||||| |||||| || |||||||||| || || |||    
T  36575697 agaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagattgcaacaggaggatattccaaaaccaaagtgctctttt 36575796  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||    
T  36575797 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcct 36575896  T
Q  312 ttaccttgtttaaatactattttgtaaagtctg 344  Q
    |||||||||||| | ||| ||||||||||||||    
T  36575897 ttaccttgtttacagactgttttgtaaagtctg 36575929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 40891978 - 40892315
Alignment:
Q  11 gttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctca 110  Q
    |||||||||| || ||||  ||||| | ||||||||||| ||  |  |||||||||||||| ||||||  ||||||||||| |||||  |||  ||||||    
T  40891978 gttatggcttttgatatcaaattggcttggttttgttacagtgtttcatggcaatttatatacacatgataatcagttttgcgctctaagagacttctca 40892077  T
Q  111 aagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatt 210  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||     
T  40892078 aagaattctatgaaagcttttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatc 40892177  T
Q  211 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 310  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| | ||| | | |||||||||||| ||    
T  40892178 tggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaaaatcc 40892277  T
Q  311 tttaccttgtttaaatactattttgtaaagtctgtttt 348  Q
     |||  ||||||| | ||| | ||||||||||||||||    
T  40892278 cttatgttgtttacagactgtcttgtaaagtctgtttt 40892315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 169 - 352
Target Start/End: Original strand, 3483065 - 3483249
Alignment:
Q  169 aagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 268  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3483065 aagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 3483164  T
Q  269 cattttgttcg-ttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  3483165 catattgttcgattttttattattcttattggagacaaaaccctttaccttgtttacagactattttgtaaagtctgttttttgg 3483249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 586791 - 586538
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||| || ||||| ||||| | ||||||||||||||  |  ||| |||||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  586791 ttatggcttctgatatcgaattggcttggttttgttacggtgtttcatgacaatttatatacacatgctaatcagttttgcgctcttggaggcttctcaa 586692  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||| | ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| |||   ||||| || ||||||||||||| | | ||    
T  586691 agaattatatgaaagctttcactattatttggatttcggtcttatttactatatggaaagatcgaaaccgaaggatattccaaaaccaaattgattaatt 586592  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 265  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  586591 ggaagttcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaa 586538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 121 - 348
Target Start/End: Complemental strand, 21608136 - 21607909
Alignment:
Q  121 tgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttct 220  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||||||||||| ||||||||||| |||    
T  21608136 tgaaagcttttactattatttggatttcggtcttatttattatatgaaaagatcgcaaattgaggattttccaaaaccaaattgatcatttggaagctct 21608037  T
Q  221 tcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgt 320  Q
    | |||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| ||||| | | |||||||||||| ||||||  ||||    
T  21608036 ttttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgattatcccttttggagacaaaaacctttatgttgt 21607937  T
Q  321 ttaaatactattttgtaaagtctgtttt 348  Q
    ||| |  || | ||||||||||||||||    
T  21607936 ttacagtctgtcttgtaaagtctgtttt 21607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 124 - 345
Target Start/End: Complemental strand, 31253113 - 31252892
Alignment:
Q  124 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttct 223  Q
    |||| ||| |||| ||||||||||||||||||| |||||| |||||||||||||||| |||||| || ||||||||||  | || |||||| |||||  |    
T  31253113 aagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacaggaggatattccaaaaccaaagcgctcttttggaggttctatt 31253014  T
Q  224 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 323  Q
    |||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||   || | |||||||| ||||    
T  31253013 tgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgttttttattattcgtattggagaattaatcatttaccttattta 31252914  T
Q  324 aatactattttgtaaagtctgt 345  Q
     |  || |||||||||||||||    
T  31252913 caggctgttttgtaaagtctgt 31252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 20705704 - 20706042
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  |||||| ||||| ||||||| |  ||||||||||||| |||||||| ||||    
T  20705704 cggttatggcttttgatatcgaattggtttggtattgttactgtgtttcatggcactttattttcacatactcatcagttttgtgcacttggagggttct 20705803  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    | ||||| |||  |  ||| ||| |||||||||||||||||||||||||   ||| ||||||||||| || | |||||||||||| ||||||  ||  ||    
T  20705804 ccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggaggatttttcagaaccaacatgaaca 20705903  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | | |||| ||||  ||||||||| ||||| |  || | ||||||||||||||| || | |||  ||||   |||| | ||||| | |||||||||||||    
T  20705904 tctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagcaaatttcatcatgtttaattttgaatattccttttggagacaaaac 20706003  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    ||||||| ||||||| | ||| | |||||| ||||||||    
T  20706004 cctttacattgtttacagactgtcttgtaatgtctgttt 20706042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 20873748 - 20874086
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  |||||| ||||| ||||||| |  ||||||||||||| |||||||| ||||    
T  20873748 cggttatggcttttgatatcgaattggtttggtattgttactgtgtttcatggcactttattttcacatactcatcagttttgtgcacttggagggttct 20873847  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    | ||||| |||  |  ||| ||| |||||||||||||||||||||||||   ||| ||||||||||| || | |||||||||||| ||||||  ||  ||    
T  20873848 ccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggaggatttttcagaaccaacatgaaca 20873947  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | | |||| ||||  ||||||||| ||||| |  || | ||||||||||||||| || | |||  ||||   |||| | ||||| | |||||||||||||    
T  20873948 tctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagcaaatttcatcatgtttaattttgaatattccttttggagacaaaac 20874047  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    ||||||| ||||||| | ||| | |||||| ||||||||    
T  20874048 cctttacattgtttacagactgtcttgtaatgtctgttt 20874086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 308
Target Start/End: Complemental strand, 27278612 - 27278313
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||  || ||| | ||||||| ||| |||||||| || |  ||||||||||| || ||||||| ||||||||||||||||||| ||||||||    
T  27278612 cggttatggctcttgatattgcattggtttggtattgttacgattttacatggcaatttaaatacacatgctaatcagttttgtgctcttgcaggtttct 27278513  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||| |||||||   | ||| ||| ||||||| ||| ||| ||||||||||  ||||| ||||||||||||||  |  |||||  |||| || |||| |||    
T  27278512 caaggaattctagaacagcttttactattatatgggttttggtcttatttgttatattgaaagatcgcaacagtataattttctaaaatcacattgatca 27278413  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | | |||| ||||||| ||||||| ||| | ||| ||| ||||||||||||||| |||| |||  |||| | |||| | ||| ||| || ||||||||||    
T  27278412 tcttgaagctcttcttaaaagggttaaatttcaatcgtattggtggttgaaagcaaacttcatcatgtttgcttttaactatcctttttagagacaaaac 27278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 344
Target Start/End: Complemental strand, 27868876 - 27868585
Alignment:
Q  43 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 142  Q
    |||||||||||||  |||| |||||| |||| ||||| ||||| ||||||||| ||||||||||||||||||| |||  || |   ||| ||||||||||    
T  27868876 ttgttacggttctacatggtaatttacattctcatgctaatcaattttgtgcttttggaggtttctcaaagaactctaggacaagttttactattatttg 27868777  T
Q  143 gatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 242  Q
    |||||  |||         || |||||||| || |||| ||  ||||||||  | || |||| |||| | |||| ||||||||||||| | ||| |||||    
T  27868776 gattt-tgtc---------atttggaaagaccgaaacaggataatttttcagcatcacattgatcatctagaagctcttcttgaaaggattaaaatccaa 27868687  T
Q  243 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtc 342  Q
    |||| ||||||||||||||| || |||||  |||||| |||| | ||||| | ||||||  ||||| |||||  ||||||| | ||| |||||||| |||    
T  27868686 acgtattggtggttgaaagcgaattacatcatgttcgattttgactattccttttggaggaaaaactctttagtttgtttagagactgttttgtaatgtc 27868587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 18815654 - 18815754
Alignment:
Q  58 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 157  Q
    ||||||||||| || | ||| ||||||||||||||||||||||||| |||||||| ||||| | || |   || ||||||||||||||||||||||||||    
T  18815654 atggcaatttaaatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcatggacattcttatctattatttggatttcggtcttatt 18815753  T
Q  158 t 158  Q
    |    
T  18815754 t 18815754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 27990212 - 27990312
Alignment:
Q  58 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 157  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||| |||||||| |||||   || | | || ||||||||||||||||||||||||||    
T  27990212 atggcgatttatatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcaaggacaaccttctctattatttggatttcggtcttatt 27990311  T
Q  158 t 158  Q
    |    
T  27990312 t 27990312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 289
Target Start/End: Original strand, 45649421 - 45649653
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  ||||||||||||| || ||||    
T  45649421 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatttggatttctgttttat 45649520  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || || |||||| | |||  ||| |||||||| || ||   || |||| | | || ||||||||||||| | ||||| |||| |||||||||| |    
T  45649521 tcgtcatttgaaaagatagaaactggagaatttttcagaatcactctgatcatcttggagctcttcttgaaaggattaaacttcaaatgttttggtggct 45649620  T
Q  257 gaaagctaactacattttgttcgttttttatta 289  Q
    |||||| || ||||||||||||| |||| ||||    
T  45649621 gaaagcgaattacattttgttcgattttgatta 45649653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 8457467 - 8457559
Alignment:
Q  80 aaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 172  Q
    |||||||||||||||||||||||| |||||||| |||||   || ||  || | |||||||||||||||||||||||||  ||| ||||||||    
T  8457467 aaatcagttttgtgctcttggagggttctcaaaaaattcaaggacagtcttctttattatttggatttcggtcttatttgttatctggaaaga 8457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 284
Target Start/End: Complemental strand, 47553251 - 47553024
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||| || || |||  || ||  ||| |  |||| |||||||| || ||||    
T  47553251 aatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaagtctaggacaggttttacagttatctggatttcagttttat 47553152  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || ||||||||| | |||| ||| |||||||| || ||  ||| |||| | || | ||| ||||||||| | ||||| ||||||||||||||| |    
T  47553151 tcgtcatttggaaagatagaaacaggagaatttttcagaatcattttgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggct 47553052  T
Q  257 gaaagctaactacattttgttcgttttt 284  Q
    |||||| || ||||||||||||| ||||    
T  47553051 gaaagcgaattacattttgttcgatttt 47553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 22866116 - 22866228
Alignment:
Q  165 tggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 264  Q
    ||||||||| | |||||||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| |    
T  22866116 tggaaagatagaaacatgagaatttttcagaatcattctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcga 22866215  T
Q  265 actacattttgtt 277  Q
    | |||||| ||||    
T  22866216 attacattatgtt 22866228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 18815815 - 18815868
Alignment:
Q  219 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 272  Q
    |||||||||| ||| ||||||||||| | ||||||||||||||| |||||||||    
T  18815815 cttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacatt 18815868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 10462349 - 10462692
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  10462349 cggttatggcttatgatatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaaccagatttgtgctcttggaggtttct 10462448  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  10462449 caaagaattctgtgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggattttccaaaaccaaattgttca 10462548  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10462549 tttggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggagacaaaac 10462648  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    ||||||||||||||| | | ||||||||||||||||||||||||    
T  10462649 cctttaccttgtttacagaatattttgtaaagtctgttttttgg 10462692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 5825182 - 5825525
Alignment:
Q  10 ggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  5825182 ggttatggcttatgctatcggattggttaggttttgttacggttcttaatggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctc 5825281  T
Q  110 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcat 209  Q
    |||| ||| | || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  5825282 aaagcattatgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcat 5825381  T
Q  210 ttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacc 309  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |    
T  5825382 ctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggaggcaaaatc 5825481  T
Q  310 ctttaccttgtttaaatactattttgtaaagtctgttttttggg 353  Q
    |||||| ||||||| | |||||| ||||||||||||||||||||    
T  5825482 ctttacattgtttacaaactattgtgtaaagtctgttttttggg 5825525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 6678788 - 6679131
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||  |||    
T  6678788 cggttatggcttatgctatcggattggttaggtattgttacggttctcaatgacaatttttattcacatgctaatcagttttgtgcacttggaggagtct 6678887  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||| | ||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  6678888 caaagcactctgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 6678987  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||     
T  6678988 tctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggaggcaaaat 6679087  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  6679088 cctttaccttgtttacagactattgtgtaaagtctgttttttgg 6679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 27891705 - 27891450
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||  || ||||| ||||||| ||| ||||||||||  |  |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  27891705 ttatggctcttgatatcgaattggtttggtattgttacggtgtttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaa 27891606  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||| |||  || | | ||| ||||||| ||||||| ||||||||||  ||| |||||||||||||||| |||||||||||| ||||||||||  ||| |    
T  27891605 agaagtctaggacatcttttactattatatggatttaggtcttatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatct 27891506  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 267  Q
      ||| |||| |||||||||| ||||| ||||| | ||||||||||||||| ||||    
T  27891505 caaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaact 27891450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 73 - 262
Target Start/End: Complemental strand, 11265971 - 11265782
Alignment:
Q  73 cacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 172  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||  ||| ||||||||    
T  11265971 cacatgctaatcagttttgtgctcttggaggtttctcaaggaagtctatgaaagcttttactattatttggatttcggtcttatttgttatttggaaaga 11265872  T
Q  173 tcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 262  Q
    ||| |||| ||||||||||||  | ||  | | |||| | |||| ||| ||||||||||| ||||| ||||| | |||||||||||||||    
T  11265871 tcgtaacaggaggatttttcagcatcatttggatcatcttgaagctctccttgaaagggttaaacttcaaacttattggtggttgaaagc 11265782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 43 - 338
Target Start/End: Original strand, 31962918 - 31963213
Alignment:
Q  43 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 142  Q
    |||||||| ||||  |||| |||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||| |||  || ||  ||| |||||||||     
T  31962918 ttgttacgattctacatggtaatttacattctcatgctaatcaattttgtggtcttggaggtttctcaaagaactctaggacaggttttactattatttc 31963017  T
Q  143 gatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 242  Q
    |||||||||  |||||   || |||||||| || |||| ||| ||||||||  | || |||| |||| | |||| ||||||||||||||| ||| |||||    
T  31963018 gatttcggtactatttgtcatttggaaagaccgaaacaggagaatttttcagcatcacattgatcatctagaagctcttcttgaaagggttaaaatccaa 31963117  T
Q  243 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 338  Q
    |||| ||||||||||||||| || |||||  |||| | |||| | ||| | | |||||   |||||||||||  ||||||||| ||| ||||||||    
T  31963118 acgtattggtggttgaaagcgaattacatcatgtttgattttgactatcccttttggacgaaaaaccctttagtttgtttaaagactgttttgtaa 31963213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 38931701 - 38931499
Alignment:
Q  87 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgagga 186  Q
    |||||||||||||||||||||||||| || |||  || ||  ||| |  |||||||||||||||| ||||| |  || ||||||||| | |||| ||| |    
T  38931701 ttttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggatttcggttttattcatcatttggaaagatagaaacaggagaa 38931602  T
Q  187 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgtttttta 286  Q
    ||||||| || ||  ||| |||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||| |||| |    
T  38931601 tttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagcgaattacattttgttcgattttga 38931502  T
Q  287 tta 289  Q
    |||    
T  38931501 tta 38931499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 3998600 - 3998524
Alignment:
Q  273 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  3998600 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagactgttttgtagagtctgttttt 3998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 267
Target Start/End: Complemental strand, 29150281 - 29150057
Alignment:
Q  43 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 142  Q
    ||||||||||| |  ||| ||||||| || | ||||| ||||||||||||||||| ||  | |||||||||| ||||  || ||| ||| ||||||||||    
T  29150281 ttgttacggttttacatgacaatttaaatactcatgctaatcagttttgtgctctcggtagcttctcaaagagttctacgatagcgtttactattatttg 29150182  T
Q  143 gatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 242  Q
    ||||| | |||||| |  ||||||||||||||| || |  |  ||||| ||||| ||  ||| |||| | |||| |||| |||||||||| ||||| |||    
T  29150181 gattttgatcttatatgttatatggaaagatcgaaagagaaaaattttccaaaatcactttgatcatcttgaagctcttattgaaagggttaaacttcaa 29150082  T
Q  243 acgttttggtggttgaaagctaact 267  Q
    |||| || |||||||||||| ||||    
T  29150081 acgtattcgtggttgaaagcaaact 29150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 87 - 277
Target Start/End: Complemental strand, 8895316 - 8895126
Alignment:
Q  87 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgagga 186  Q
    |||||||||||||||||||||||||| ||||||  || ||  ||| |  ||||||||||||| || |||||    || ||||||||| | |||| ||| |    
T  8895316 ttttgtgctcttggaggtttctcaaaaaattctaggacaggttttacagttatttggatttcagttttattcgtcatttggaaagatagaaacaggagaa 8895217  T
Q  187 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtt 277  Q
    ||||||| || ||  | | |||| |  ||| ||||||||||||||| ||||| |||||| ||| |||||||||||| || |||||||||||    
T  8895216 tttttcagaatcacttagatcatcttaaagctcttcttgaaagggttaaacttcaaacggtttagtggttgaaagcgaattacattttgtt 8895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 29322599 - 29322528
Alignment:
Q  213 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 284  Q
    |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || || ||| |||||| ||||    
T  29322599 gaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattatattatgttcgatttt 29322528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 17154019 - 17154360
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  17154019 cggttatggcttatgctattggattggttaggttttgttacggttctcaatgacaatttatattcacatgcaaatcagttttgcgctcttggaggtttct 17154118  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  17154119 caaagaattctttgaaagcatttactattatttggatttcagtcttatttactatatggaaagattgcaacaggaggattttccaaaaccaaattgttca 17154218  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggag-acaaaa 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||||    
T  17154219 tttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacgtattgttcgttttttattattcttattggagaaaaaaa 17154318  T
Q  308 ccctttaccttgtttaaatactattttgtaaagtctgttttt 349  Q
    |||||||||||||||| | ||| |||||||||||||||||||    
T  17154319 ccctttaccttgtttacagactgttttgtaaagtctgttttt 17154360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 53152297 - 53152640
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||    
T  53152297 cggttatggcttatgctatcggattggttaggtattgttacggttctcaatgacaatttatattcacatgctaatcagttttgtgcacttggaggattct 53152396  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  53152397 caaagcattctgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 53152496  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  53152497 tctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 53152596  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  53152597 cctttaccttgtttacagactattgtgtaaagtctgttttttgg 53152640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 23571833 - 23572172
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||    
T  23571833 cggttatggcttttgctatcggattggttaggttttgctacggtttttaatggcaatttatatacacatgctaatcagttttgtgcttttggaggcttct 23571932  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  23571933 caaagaattctatgaaagcatttactattatttggatttcggtattattttctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttca 23572032  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  23572033 tttggaagttctaattgaaagggtcaaacttcaaacgttttggtggttgaaagctaactgcatcttgttcgttttttattatccttattggagacaaaac 23572132  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgtttt 348  Q
    || |||  ||||||| | ||| ||||||||||||| ||||    
T  23572133 cccttatgttgtttacagactgttttgtaaagtctctttt 23572172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 3514691 - 3514384
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| |||||||||||||    
T  3514691 ttatggcttatgctatccgattggttaggttttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaa 3514592  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| ||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||| |||    
T  3514591 agaattctatgaaagcttttactattatttggatctcggtcttatatactatttggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 3514492  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| | || |||    
T  3514491 ggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgttttttattactcttattgaagaaataatcct 3514392  T
Q  312 ttaccttg 319  Q
     |||||||    
T  3514391 ataccttg 3514384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 124 - 353
Target Start/End: Complemental strand, 32945786 - 32945557
Alignment:
Q  124 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttct 223  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||    
T  32945786 aagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttct 32945687  T
Q  224 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 323  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32945686 tgaaagggtcaaactccaaacgttttggtggttgaaagttaactacatattgttcgttttttattattcttattggagacaaaaccttttaccttgttta 32945587  T
Q  324 aatactattttgtaaagtctgttttttggg 353  Q
     | |||||| ||||||||||||||||||||    
T  32945586 cagactattgtgtaaagtctgttttttggg 32945557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 344
Target Start/End: Complemental strand, 9819067 - 9818733
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  9819067 ttatggcttatgctatcggattggttaggttttgttatggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 9818968  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||| | ||||||| ||| |||| ||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| || || |||    
T  9818967 agaattttatgaaagcttttactatcatttggatttcggtcttatatactatatgggaagatcgcaacaggaggatttttcaaaaccaaagtgctctttt 9818868  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||   || | |    
T  9818867 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgttttttattattcgtattggagaattaatcat 9818768  T
Q  312 ttaccttg--tttaaatactattttgtaaagtctg 344  Q
    ||||||||  |||| | ||| ||||||||||||||    
T  9818767 ttaccttgtttttacagactgttttgtaaagtctg 9818733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 348
Target Start/End: Complemental strand, 48547561 - 48547225
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggt-tctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctca 110  Q
    ||||||||  || ||||| ||||||| ||| |||||||||| |||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  48547561 ttatggctcttgatatcgaattggtttggtattgttacggtgtctcaa-ggcaatttaatttcacatgctaatcagttttgtgctcttggaggtttctca 48547463  T
Q  111 aagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatt 210  Q
    ||||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| |||||||||||||||| |||||||||||| ||||||||||  |||     
T  48547462 aagaagtctaggacaacttttactattatatggatttcggtcttatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatc 48547363  T
Q  211 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 310  Q
    | |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| |||| |||   ||||| |||| ||||| ||| |||||||||||| ||    
T  48547362 tcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcacgttcgcttttgattatcctttttggagacaaaatcc 48547263  T
Q  311 tttaccttgtttaaatactattttgtaaagtctgtttt 348  Q
     |||| ||||||| | ||| |  ||||| |||||||||    
T  48547262 gttacattgtttacagactgtcatgtaatgtctgtttt 48547225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 42462730 - 42462390
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||| || ||||  ||||  | |||||||||||| |  |  |||||||||||||| ||||||| ||||||||||||||||||||||| || |    
T  42462730 cggttatggcttttgatatcaaattgacttggttttgttacgatgtttcatggcaatttatatacacatgctaatcagttttgtgctcttggaggctttt 42462631  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||| | ||||||  ||| ||||||||||||||||||||||||||  ||| || ||||||||||||||||||||||| |||||||| |    |||    
T  42462630 caaagaattatatgaaaggttttactattatttggatttcggtcttatttgttatttgaaaagatcgcaacatgaggattttccaaaaccatacgaatca 42462531  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | | |||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||| |||  |||||| |||| ||||| |   ||||||||||||     
T  42462530 tcttgaagctcttcttgaaagggttaaacttcaaactttttggtggttgaaagctaacttcatcatgttcgcttttgattatcccatttggagacaaaat 42462431  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttt 349  Q
    |  |||  ||||||| | ||| | |||||| ||||||||||    
T  42462430 ctcttatgttgtttatagactgtcttgtaatgtctgttttt 42462390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 224 - 349
Target Start/End: Complemental strand, 44879790 - 44879665
Alignment:
Q  224 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 323  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  44879790 tgaaagggtcaaacttcaaacgttttggtggttgaaaactaactacatattgttcgtttttgattattcttattggagacaaaatcctttaccttgttta 44879691  T
Q  324 aatactattttgtaaagtctgttttt 349  Q
     ||||| |||||||||||||||||||    
T  44879690 catactgttttgtaaagtctgttttt 44879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 346
Target Start/End: Complemental strand, 23603243 - 23602936
Alignment:
Q  39 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 138  Q
    ||||||||||||||  |  |||||||||||||| | ||||| | ||||||||||||||||||||| || |||||||||||| |||||||  | |||||||    
T  23603243 ggttttgttacggtgtttcatggcaatttatatcctcatgctattcagttttgtgctcttggaggattttcaaagaattctatgaaagctctgtctatta 23603144  T
Q  139 tttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 238  Q
    ||||||||||| | ||||||  ||| ||||||||||||||| ||| |||||| |||||| | || | |||| | |||| ||||||||||| ||| |||||    
T  23603143 tttggatttcgattttatttgttatttggaaagatcgcaacttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaact 23603044  T
Q  239 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 338  Q
     ||||| ||||||||| ||||||| |||| |||    |||  |||| ||||| | | |||||||||||| ||||||  ||||||| | ||| || |||||    
T  23603043 tcaaaccttttggtggatgaaagcaaactccatcaccttcagttttgattatcccttttggagacaaaatcctttatgttgtttacagactgttatgtaa 23602944  T
Q  339 agtctgtt 346  Q
     |||||||    
T  23602943 tgtctgtt 23602936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 147 - 345
Target Start/End: Complemental strand, 9246901 - 9246703
Alignment:
Q  147 tcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgt 246  Q
    |||||||||| |||||| | |||||||| ||||| |||||| || |||||||||| ||||| |||||| ||||| |||||||| |||||||| ||||| |    
T  9246901 tcggtcttatatactatttagaaagatcacaacaggaggatattccaaaaccaaagtgttcttttggaggttctacttgaaagagtcaaacttcaaacat 9246802  T
Q  247 tttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgt 345  Q
     |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| |  || |||||||||||||||    
T  9246801 attggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacaggctgttttgtaaagtctgt 9246703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 260
Target Start/End: Complemental strand, 30737449 - 30737247
Alignment:
Q  58 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 157  Q
    ||||| ||||| || ||||||| |||||||||||| |||||||||||||||||||||| |||  || | | ||| ||||||| |||||||||||||||||    
T  30737449 atggcgatttacatacacatgcgaatcagttttgtactcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatt 30737350  T
Q  158 tactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 257  Q
    |  |||||| ||||||||||| | ||| ||||| ||||| || |||| |||| | |||| ||||||||||||||| ||||| ||||||| ||||||||||    
T  30737349 tgttatatgaaaagatcgcaagaggagaattttccaaaatcacattgatcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttg 30737250  T
Q  258 aaa 260  Q
    |||    
T  30737249 aaa 30737247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 8542381 - 8542253
Alignment:
Q  143 gatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 242  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| | |    
T  8542381 gattttggtcttatttactatattgaaagatcgtaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcga 8542282  T
Q  243 acgttttggtggttgaaagctaactacat 271  Q
    |||||||||||||||||||||||||||||    
T  8542281 acgttttggtggttgaaagctaactacat 8542253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 42459503 - 42459807
Alignment:
Q  8 acggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttc 107  Q
    ||||||||||||  || ||||| | ||| | ||| ||||||||||| |  |||| |||||| |||| ||||| ||||||||||||||||| || || |||    
T  42459503 acggttatggctcttggtatcgcagtggcttggtattgttacggttttacatggtaatttacattctcatgctaatcagttttgtgctctcggtggcttc 42459602  T
Q  108 tcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttc 207  Q
    |||| || || | ||  ||| ||| |||||||||||||||||||||||| |  |||||||||||||||||||| || || ||||||||| ||  ||| ||    
T  42459603 tcaaggagttatatgttagcgtttactattatttggatttcggtcttatatgttatatggaaagatcgcaacagga-gaattttcaaaatcattttgatc 42459701  T
Q  208 atttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 307  Q
    || | |||| |||| | | |||||| ||||| ||||||| ||||||||||||||| ||||  ||   |||||||||| | | | ||| ||||||||||||    
T  42459702 atcttgaagctcttatggtaagggttaaacttcaaacgtattggtggttgaaagcaaactttatcacgttcgtttttgactgtcctttttggagacaaaa 42459801  T
Q  308 cccttt 313  Q
     |||||    
T  42459802 tccttt 42459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 313
Target Start/End: Complemental strand, 8595237 - 8594963
Alignment:
Q  39 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 138  Q
    ||||||||||||||  |  ||| ||||||| || | ||||| || || |||||||| |||||| |||| ||||||| ||||  |||||| || ||||||     
T  8595237 ggttttgttacggtgtttcatgtcaatttacatacccatgctaaccaattttgtgcccttggatgtttttcaaagagttctacgaaagctttgtctattg 8595138  T
Q  139 tttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 238  Q
    ||||||||||||| ||||||  ||| |||||||||||||| |||| |||||| |||||||| || | | || | |||| ||||||||||| ||| |||||    
T  8595137 tttggatttcggttttatttgttatttggaaagatcgcaatatgaagattttccaaaaccatatgggttatcttgaagctcttcttgaaaaggttaaact 8595038  T
Q  239 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacccttt 313  Q
     ||||| ||||||||| |||||||  ||| ||||  ||||  |||| ||||| | | |||||||||||| |||||    
T  8595037 tcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaatccttt 8594963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 10754025 - 10753781
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||| ||||||||||    || ||||| |||||||||||||| || || || ||| ||| ||  ||| ||||||||||||||||||| ||||    
T  10754025 aatggtaatttacattcacatgcttcccaattttgcgctcttggaggtttttcgaaaaaatctgtgacaggttttactattatttggatttcggttttat 10753926  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    ||   |||||||| ||| | ||||  || ||||||||  | ||| ||| |||  | |||||||||||||||||||| |||||||| ||||||||||||||    
T  10753925 ttgtcatatggaaggatagaaacagaagaatttttcagcaacaatttgatcagcttgaagttcttcttgaaagggttaaactccagacgttttggtggtt 10753826  T
Q  257 gaaagctaactacattttgttcgttttttattattcttattggag 301  Q
    |||||| || ||||| ||||||| |||| | ||| ||||||||||    
T  10753825 gaaagcgaattacatcttgttcgattttgactatccttattggag 10753781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 39633248 - 39633379
Alignment:
Q  213 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctt 312  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||||||| || |||||  |||||| |||| | ||| | |||||||| ||||| ||||    
T  39633248 gaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccctattggaggcaaaatcctt 39633347  T
Q  313 taccttgtttaaatactattttgtaaagtctg 344  Q
    ||| ||||||| | |||  ||||||| |||||    
T  39633348 tactttgtttacaaactgctttgtaatgtctg 39633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 284
Target Start/End: Complemental strand, 16663938 - 16663711
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| |  |||  || ||  ||| |  |||| |||||||| || ||||    
T  16663938 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggatttcagttttat 16663839  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || ||||||||| | ||||  || |||||||| || ||| ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  16663838 tcgtcatttggaaagatagaaacagaagaatttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 16663739  T
Q  257 gaaagctaactacattttgttcgttttt 284  Q
    |||||| || |||||| |||||| ||||    
T  16663738 gaaagcgaattacattatgttcgatttt 16663711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 284
Target Start/End: Complemental strand, 52196249 - 52196022
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  52196249 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatctggatttctgttttat 52196150  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || ||||||||| | ||||  || |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  52196149 tcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 52196050  T
Q  257 gaaagctaactacattttgttcgttttt 284  Q
    |||||| || |||||| |||||| ||||    
T  52196049 gaaagcaaattacattatgttcgatttt 52196022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 52962710 - 52962633
Alignment:
Q  225 gaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggaga 302  Q
    |||| ||| ||||||||| |||||||||||||||||    ||||||||||||||| |||| |||| ||| ||||||||    
T  52962710 gaaaaggttaaactccaatcgttttggtggttgaaattgtactacattttgttcgattttgattactctgattggaga 52962633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 28393405 - 28393365
Alignment:
Q  132 tctattatttggatttcggtcttatttactatatggaaaga 172  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  28393405 tctattatttggatttcggtcttatttgttatctggaaaga 28393365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 352
Target Start/End: Original strand, 2959802 - 2960145
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| || |||||||||||||| |||||||||||||| |||||||| ||||    
T  2959802 cggttatggcttatgctatcagattggttaggttttgtcacggcgctcaatggaaacttatattcacatgctaatcagttttgtgcacttggaggattct 2959901  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||    
T  2959902 caaagcattctatgtaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttca 2960001  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||    
T  2960002 tatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagcgaactacatattgttcgtttttgattattcttattggaggcaaaac 2960101  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 352  Q
    || ||| |||||||| | |||||| |||||||||||||||||||    
T  2960102 ccattatcttgtttacaaactattgtgtaaagtctgttttttgg 2960145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 26077941 - 26078278
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| ||||| |||||||    
T  26077941 ttatggcttatgttatccgattggttaggttttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctctaggagggttctcaa 26078040  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||| || ||||| ||||||| |||    
T  26078041 agaattctatgaaagctttttctattatttggatctcggtcttatatactatttggaaagatcgcaacaggaggattttccataaccatattgttctttt 26078140  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | || |||    
T  26078141 ggatgttcttcttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcct 26078240  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgttttt 349  Q
    ||| |||| ||| | ||| | |||||||||||||||||    
T  26078241 ttagcttgcttacagactgtgttgtaaagtctgttttt 26078278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 31423430 - 31423766
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||  || ||||| ||||||| ||| ||||||||||  |  | | ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31423430 ttatggctcttgatatcgaattggtttggtattgttacggtgtttcacgacaatttaaattcacatgctaatcagttttgtgctcttggaggtttctcaa 31423529  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| || ||||||||||||| ||||||||| ||||||||||||| |||| |    
T  31423530 agaactctaggacaacttttactattatatggatttcggtcttatttgttatttgaaaagatcgcaacaggaggattttccaaaaccaaattgatcatct 31423629  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
     |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| |||| ||    ||||| |||| | ||| | | |||||||||||| ||     
T  31423630 cgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcagcacgttcgcttttgactatcccttttggagacaaaatcca 31423729  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgtttt 348  Q
    |||  ||||||| | |||||  ||||| |||||||||    
T  31423730 ttatgttgtttacagactatcatgtaatgtctgtttt 31423766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 74 - 307
Target Start/End: Original strand, 26390518 - 26390751
Alignment:
Q  74 acatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagat 173  Q
    |||||| || ||||||||||| || || ||||||||||||||||||  || | | ||| |||||||||||| ||| |||||||||  |||||||||||||    
T  26390518 acatgctaaccagttttgtgccctcggtggtttctcaaagaattctaggacaacttttactattatttggacttctgtcttatttgttatatggaaagat 26390617  T
Q  174 cgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattt 273  Q
    ||||||| ||| ||||| ||||| || | || |||| | || | ||||||||||||| | || || |||||||||||||||||||||||  |||  ||      
T  26390618 cgcaacaggagaattttccaaaatcacagtgatcatctagaggctcttcttgaaaggattaagcttcaaacgttttggtggttgaaagcacactttatca 26390717  T
Q  274 tgttcgttttttattattcttattggagacaaaa 307  Q
    |||||| |||| ||||||| | ||||||||||||    
T  26390718 tgttcgcttttgattattccttttggagacaaaa 26390751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 323
Target Start/End: Complemental strand, 29530118 - 29529870
Alignment:
Q  74 acatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagat 173  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||  || | | ||| ||||||| |||| ||| |||||||||  |||||||||||||    
T  29530118 acatgctaatcagttttgtgcccttgtaggtttctcaaagaattctaggacaac-tttcctattatctggacttctgtcttatttgttatatggaaagat 29530020  T
Q  174 cgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattt 273  Q
    || ||||  || ||||| ||||| || | || |||| | || | ||||||||||||||| || || ||||| ||||||||||||||||| ||||  ||      
T  29530019 cgtaacagaagaattttccaaaatcacagtgatcatctagatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaactttatca 29529920  T
Q  274 tgttcgttttttattattcttattggagacaaaaccctttaccttgttta 323  Q
    |||||| |||| ||||||| | || ||||||||| ||||||  |||||||    
T  29529919 tgttcgcttttgattattccttttagagacaaaatcctttaagttgttta 29529870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 10802106 - 10802168
Alignment:
Q  222 cttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 284  Q
    ||||||||| | ||||| ||||||||||||||| ||||||| || |||||| |||||| ||||    
T  10802106 cttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattatgttcgatttt 10802168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 18295611 - 18295946
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |  |||| ||||||||||| ||||| |||||||||||||    
T  18295611 ttatggcttatgctatcagattggttaggttttgttatggttctcaatggcaatttatatactaatgctaatcagttttgcgctctaggaggtttctcaa 18295710  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| ||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  18295711 agaattctatgaaagcttttactattatttggatctcggccttatatactatatggaaagatcgcaacaagaggattttccaaaaccaaattgttctttt 18295810  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| |||||  ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | || |||    
T  18295811 ggaggttctatttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcct 18295910  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    |||||||||||| | ||| | |||||||||||||||    
T  18295911 ttaccttgtttacagactgtgttgtaaagtctgttt 18295946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 2894244 - 2893907
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||| || || |||||||    
T  2894244 ttatggcttatgatttcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctcatcagttttgcgctctaggtgggttctcaa 2894145  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| || |||| ||| |||| ||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| |||| || || |||    
T  2894144 agaattctatgcaagcttttactatcatttggatttcggtcttatatactatatgaaaagaccgcaacaggaggattttccaaaatcaaagtgctctttt 2894045  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    |||  |||| |||||||| |||||||||||||| | |||||| ||||||||||| | ||| |||||||||||||||||||| |||||||||   || |||    
T  2894044 ggagtttctacttgaaagagtcaaactccaaacatattggtgtttgaaagctaatttcatcttgttcgttttttattattcgtattggagaattaatcct 2893945  T
Q  312 ttaccttgtttaaatactattttgtaaagtctgttttt 349  Q
    |||||||||||| | ||| |||||||||||||||||||    
T  2893944 ttaccttgtttacagactgttttgtaaagtctgttttt 2893907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 28605099 - 28605440
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||  || ||||| ||||||| ||| ||||||| ||  |  |||||||| ||| |||||||||  |||||||||||||||||||||| ||||    
T  28605099 cggttatggctcttgatatcgaattggtttggtattgttactgtgtttcatggcaatctattttcacatgctcatcagttttgtgctcttggagggttct 28605198  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    | ||||| ||| ||| ||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| |||| |||||||||||| ||||||| ||  ||    
T  28605199 ccaagaagtctatgacagcttttactattatttggatttcggtcttatttgttatttggaaagatcgtaacaggaggatttttcagaaccaaaatgaaca 28605298  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | | |||| |||| |||||||||| ||||| || |  | |||| |||||||||| |||| | |  |||||| |||| | ||||||| |||||||||||||    
T  28605299 tcttgaagctctttttgaaagggttaaacttcagaattattggcggttgaaagcaaacttcgtcatgttcgcttttgactattctttttggagacaaaac 28605398  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgtttttt 350  Q
    ||||||| ||||||| | ||| |  ||||| |||||||||||    
T  28605399 cctttacattgtttacagactgtcatgtaatgtctgtttttt 28605440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 267
Target Start/End: Complemental strand, 667222 - 667016
Alignment:
Q  60 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 159  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||     
T  667222 ggcaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatttg 667123  T
Q  160 ctatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 259  Q
     |||||||||||||||||||| ||||||||| |||||||| || | |||||| |||| |||||||||||| ||  |||| ||||  | ||||||||||||    
T  667122 ttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcattttgaagctcttcttgaaagcgt-taacttcaaagatattggtggttgaa 667024  T
Q  260 agctaact 267  Q
    ||| ||||    
T  667023 agcaaact 667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 284
Target Start/End: Original strand, 5391777 - 5392004
Alignment:
Q  57 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  5391777 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 5391876  T
Q  157 ttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 256  Q
    |    || ||||||||| | |||| ||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  5391877 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 5391976  T
Q  257 gaaagctaactacattttgttcgttttt 284  Q
    |||||| || ||||||||||||| ||||    
T  5391977 gaaagcgaattacattttgttcgatttt 5392004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 17227814 - 17227675
Alignment:
Q  133 ctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 232  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||||||  || ||||||||||| || |||| | |  | | || ||||||| |||||||    
T  17227814 ctattatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattagcttgcagctcttcttaaaagggt 17227715  T
Q  233 caaactccaaacgttttggtggttgaaagctaactacatt 272  Q
     ||||||||||||| ||||||||||||||| |||| ||||    
T  17227714 taaactccaaacgtattggtggttgaaagcgaacttcatt 17227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 284
Target Start/End: Original strand, 14223505 - 14223656
Alignment:
Q  133 ctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 232  Q
    ||||||||||||||| |||||||| |  ||||||||| |||||||||| ||| ||||| | ||| ||  ||| |||| |||||| |||| | |||| |||    
T  14223505 ctattatttggattttggtcttatatgttatatggaatgatcgcaacaagagaattttccgaaatcactttgatcatctggaagctcttatggaaacggt 14223604  T
Q  233 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 284  Q
     ||||| ||||||| ||||||||| ||||| |||| |||   ||||||||||    
T  14223605 taaacttcaaacgtattggtggttaaaagcaaacttcatcacgttcgttttt 14223656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 7218686 - 7218820
Alignment:
Q  133 ctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 232  Q
    |||| |||||||||||||| |||| |  |||||||||||||||||| | ||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  7218686 ctatcatttggatttcggttttatatgttatatggaaagatcgcaataggagaatatttcaaaaacaggttgttcatcttgaagctcttttggaaaaggt 7218785  T
Q  233 caaactccaaacgttttggtggttgaaagctaact 267  Q
     ||||| ||| ||| ||||||||||||||| ||||    
T  7218786 taaacttcaagcgtattggtggttgaaagcaaact 7218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 271
Target Start/End: Original strand, 9759779 - 9759977
Alignment:
Q  73 cacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 172  Q
    ||||||| || || |||||| |||||||||||||||||||||| |||  ||  |  ||| ||  ||| |||||||||   ||||||  ||| ||||||||    
T  9759779 cacatgctaaccaattttgtcctcttggaggtttctcaaagaactctaggacgggctttactgctatatggatttcgacattatttgttatttggaaaga 9759878  T
Q  173 tcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 271  Q
    ||| |||| ||| || |||||||| ||||||| |||| | || | ||||||||  ||||| ||||| |||| || ||||||||||||||| || |||||    
T  9759879 tcgtaacaggagaatatttcaaaatcaaattgatcatcttgatgctcttcttgggagggttaaacttcaaatgtattggtggttgaaagcgaattacat 9759977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 41343020 - 41343282
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| | ||||||||||||||| || |||| ||||||||||| ||||||||||| ||||    
T  41343020 cggttatggcttttgctatcggattggcttggttttgttacggtttttaatggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttct 41343119  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  41343120 caaagaattctatgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggattttccaaaaccaaattgttca 41343219  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 271  Q
    |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41343220 tttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 41343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10003941 - 10003603
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || |||||||    
T  10003941 cggttatggcttttgctatcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttct 10003842  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    ||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||  ||||| || |||||||||| || ||     
T  10003841 caaagaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacagaaggatattccaaaaccaaagtgctct 10003742  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
     ||||| ||||| |||||||| |||||||| ||||| | ||||||||| |||||||| ||||| |||||||||||| ||||||| |||||||||   ||     
T  10003741 cttggaggttctacttgaaagagtcaaacttcaaacatattggtggtttaaagctaattacatcttgttcgtttttgattattcgtattggagaattaat 10003642  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    ||||||||||||||| | ||| |||||||||||||||||    
T  10003641 cctttaccttgtttacagactgttttgtaaagtctgttt 10003603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 27029959 - 27029648
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  27029959 ttatggcttatgctctcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 27029860  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| |||||||||||||||| |||||| || |||||||||| || || |||    
T  27029859 agaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacaggaggatattccaaaaccaaagtgctctttt 27029760  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 311  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||| |||||  || |||    
T  27029759 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgtttttcattattcgtatttgagacttaatcct 27029660  T
Q  312 ttaccttgttta 323  Q
    ||||||||||||    
T  27029659 ttaccttgttta 27029648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 124 - 349
Target Start/End: Original strand, 44753748 - 44753973
Alignment:
Q  124 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttct 223  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||| |||||||||| ||  | ||||||  |||| ||    
T  44753748 aagcttttactattatttggatttcggtcttatatactatatggaaagaccgcaacagaaggattttccaaaaccaaagtgcacttttggagtttctact 44753847  T
Q  224 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 323  Q
    |||||| |||||||||||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||||||||||||||    
T  44753848 tgaaagagtcaaactccaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgttta 44753947  T
Q  324 aatactattttgtaaagtctgttttt 349  Q
     | ||| |||||||||||||||||||    
T  44753948 cagactgttttgtaaagtctgttttt 44753973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 156 - 347
Target Start/End: Original strand, 48759777 - 48759968
Alignment:
Q  156 tttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 255  Q
    |||| |||||||||||||||||||| || |||||| |||||||||||||||| |||||| ||| | |||||||| |||||||| ||||||||||||||||    
T  48759777 tttaatatatggaaagatcgcaacaggaagattttccaaaaccaaattgttcttttggaggttttacttgaaagagtcaaacttcaaacgttttggtggt 48759876  T
Q  256 tgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 347  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   || | ||||||||||||| | ||| | |||||||||||||||    
T  48759877 tgaaagctaactacatcttgttcgttttttattattcttattggagaattaatcatttaccttgtttacagactgtgttgtaaagtctgttt 48759968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 71 - 348
Target Start/End: Complemental strand, 5557215 - 5556938
Alignment:
Q  71 ttcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaa 170  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| || | | ||| ||||||| ||||||||||||||||||  | | ||||||    
T  5557215 ttcacatgctaatcagttttgtgctcttggagctttctcaaagaattcttggataacttttactattatatggatttcggtcttatttgttgtttggaaa 5557116  T
Q  171 gatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactaca 270  Q
    |||||||||| ||||||||||||| ||||||||| |||| | |||| |||| |||||||||| ||||| ||||| |  |||||||||||||| |||| ||    
T  5557115 gatcgcaacaggaggatttttcaataccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttactggtggttgaaagcaaacttca 5557016  T
Q  271 ttttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 348  Q
    |   ||||| |||| | ||| | | |||||||||||| || |||| ||||||| | ||| |  ||||| |||||||||    
T  5557015 tcacgttcgcttttgactatcccttttggagacaaaatccgttacattgtttacagactgtaatgtaatgtctgtttt 5556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 49369774 - 49369479
Alignment:
Q  12 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 111  Q
    ||||||||  || ||||| ||||| | ||||||||||||||  |  ||| |||||||||| | ||||| || ||||||| ||| ||||||||||| ||||    
T  49369774 ttatggctcttgatatcgaattggcttggttttgttacggtgtttcatgacaatttatatactcatgctaaccagttttatgcccttggaggtttttcaa 49369675  T
Q  112 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcattt 211  Q
    |||||| |  |||||| || |||||||||||||||||| | ||||||  ||| ||||||||| |||| |||| |||||| ||||||||  | | |||| |    
T  49369674 agaattatacgaaagctttgtctattatttggatttcgattttatttgttatttggaaagattgcaatatgaagattttccaaaaccatttgggtcatct 49369575  T
Q  212 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 307  Q
     |||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| |||| |||| ||||   |||| ||||| | | ||||||||||||    
T  49369574 tgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcaaacttcattatgtttacttttgattatcccttttggagacaaaa 49369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 133 - 344
Target Start/End: Complemental strand, 37666239 - 37666028
Alignment:
Q  133 ctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 232  Q
    ||||||||||||||||||| ||||| |  || ||||||||| | |||| ||| ||||||||  | ||| ||| |||| | |||| ||| |||||||||||    
T  37666239 ctattatttggatttcggttttattcatcatttggaaagatagaaacaggagaatttttcagcatcaatttgatcatcttgaagctctacttgaaagggt 37666140  T
Q  233 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactatt 332  Q
    |||||||||||| ||||||||||||||| | || |||||| |||||| |||| | ||| | ||||||||  |||| ||||||| ||||||| | |||  |    
T  37666139 caaactccaaacattttggtggttgaaaacgaattacattatgttcgattttgactatccctattggaggaaaaatcctttactttgtttacagactgct 37666040  T
Q  333 ttgtaaagtctg 344  Q
    |||||| |||||    
T  37666039 ttgtaatgtctg 37666028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 267
Target Start/End: Complemental strand, 45757644 - 45757435
Alignment:
Q  58 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 157  Q
    ||||||||||| ||  |||||  ||||||||||||||  ||||||| |||||||||||||||  || | | ||| ||||||| |||| ||  ||||||||    
T  45757644 atggcaatttacatatacatgttaatcagttttgtgcctttggaggcttctcaaagaattctaggacaccttttactattatctggacttttgtcttatt 45757545  T
Q  158 tactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 257  Q
    |  ||||||||||||| |||||| ||  ||||| ||||| || | || |||| |  | | ||||||||||||||| || || ||||| ||||||||||||    
T  45757544 tgttatatggaaagattgcaacaggaaaattttccaaaatcacagtgatcatctaaatgctcttcttgaaagggttaagcttcaaacattttggtggttg 45757445  T
Q  258 aaagctaact 267  Q
    ||||| ||||    
T  45757444 aaagcaaact 45757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 66 - 271
Target Start/End: Complemental strand, 40392658 - 40392461
Alignment:
Q  66 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 165  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||||||||||     ||| |   ||||||||||||||||||  |||||||  |||||    
T  40392658 ttatatgctcattcaaatcagttttgtgctcttggagggttctcaaagaattc-----aagga---tctattatttggatttcgaccttatttgttatat 40392567  T
Q  166 ggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 265  Q
    ||||||| || ||||  || |||||| | |||||| ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  40392566 ggaaagaccgtaacaatagaatttttgataaccaatttgatcaacttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 40392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 32152387 - 32152500
Alignment:
Q  234 aaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattt 333  Q
    |||||| |||||||||||||||||||||| || |||||  |||||| |||| | ||| ||||||||||  |||| ||||||| ||||||| | |||  ||    
T  32152387 aaactctaaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccttattggaggaaaaatcctttactttgtttacagactgctt 32152486  T
Q  334 tgtaaagtctgttt 347  Q
    ||||| ||||||||    
T  32152487 tgtaatgtctgttt 32152500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 26995917 - 26995826
Alignment:
Q  66 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 157  Q
    |||||| | ||| |||||||||||||| |||||||||| |||||||| |||||   || | |||| ||| ||||||||||||||||||||||    
T  26995917 ttatatgctcattcaaatcagttttgtactcttggagggttctcaaaaaattcaaggacaacattctctgttatttggatttcggtcttatt 26995826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 26995765 - 26995712
Alignment:
Q  219 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 272  Q
    |||||||| | ||| ||||||||||| | ||||||||||||||| |||||||||    
T  26995765 cttcttgagaaggttaaactccaaacatattggtggttgaaagcgaactacatt 26995712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 74306 - 73969
Alignment:
Q  11 gttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctca 110  Q
    |||||||||| || ||||  ||||| | ||||||||||| ||  |  |||||||||||||| ||||||  ||||||||||| |||||  |||  ||||||    
T  74306 gttatggcttttgatatcaaattggcttggttttgttacagtgtttcatggcaatttatatacacatgataatcagttttgcgctctaagagacttctca 74207  T
Q  111 aagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatt 210  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||     
T  74206 aagaattctatgaaagcttttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatc 74107  T
Q  211 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 310  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| | ||| | | |||||||||||| ||    
T  74106 tggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaaaatcc 74007  T
Q  311 tttaccttgtttaaatactattttgtaaagtctgtttt 348  Q
     |||  ||||||| | ||| | ||||||||||||||||    
T  74006 cttatgttgtttacagactgtcttgtaaagtctgtttt 73969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 58608 - 58948
Alignment:
Q  9 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 108  Q
    |||||||||||  || ||||  ||||| | ||||||||||||||  |  | | ||||||| || ||||||| ||||||||||||||||||||||||||||    
T  58608 cggttatggctcttgatatcaaattggcttggttttgttacggtgtttcacgacaatttaaatacacatgctaatcagttttgtgctcttggaggtttct 58707  T
Q  109 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 208  Q
    |||||||  || ||| ||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||| |||||||| || | |||    
T  58708 caaagaacgctatgatagcttttactattatttggatttcggtcttatttgttatatggaaagatcgcaacaggaggattttccaaaaccatatggatca 58807  T
Q  209 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 308  Q
    | | |||| ||||||||||||||| ||||| ||||| | ||||||||||||||| |||| |||    |||| |||| | ||| | | ||||||||||||     
T  58808 tcttgaagctcttcttgaaagggttaaacttcaaacatattggtggttgaaagcaaacttcatcactttcgcttttgactatcccttttggagacaaaat 58907  T
Q  309 cctttaccttgtttaaatactattttgtaaagtctgttttt 349  Q
    || |||  ||||||| | ||| | |||||| ||||||||||    
T  58908 cccttatgttgtttacagactgtcttgtaatgtctgttttt 58948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 267
Target Start/End: Original strand, 225060 - 225194
Alignment:
Q  133 ctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 232  Q
    |||| |||||||||||||| ||||||  |||||||||||||||||| | ||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  225060 ctatcatttggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaaaggt 225159  T
Q  233 caaactccaaacgttttggtggttgaaagctaact 267  Q
     ||||| ||||||| |||||| |||||||| ||||    
T  225160 taaacttcaaacgtattggtgattgaaagcaaact 225194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 11026 - 10928
Alignment:
Q  58 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 156  Q
    ||||| ||||||||   ||| ||||||| |||||||||||||||||||| ||||| |||||    | | | || |||||||||||||||||||||||||    
T  11026 atggcgatttatataatcattcaaatcaattttgtgctcttggaggtttatcaaaaaattcaagtacaactttctctattatttggatttcggtcttat 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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