View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-2 (Length: 964)

Name: NF5975-Insertion-2
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-2
NF5975-Insertion-2
[»] chr6 (12 HSPs)
chr6 (342-698)||(860171-860523)
chr6 (449-638)||(867584-867777)
chr6 (839-948)||(7412733-7412840)
chr6 (187-296)||(860013-860128)
chr6 (839-948)||(17264315-17264422)
chr6 (841-948)||(14587707-14587812)
chr6 (861-948)||(1945676-1945762)
chr6 (856-947)||(4508450-4508539)
chr6 (882-948)||(3717430-3717495)
chr6 (189-251)||(867937-867999)
chr6 (867-948)||(5699491-5699570)
chr6 (867-948)||(32035046-32035125)
[»] chr5 (19 HSPs)
chr5 (839-948)||(38692929-38693037)
chr5 (839-948)||(40620137-40620244)
chr5 (839-947)||(31929254-31929359)
chr5 (839-947)||(28108249-28108354)
chr5 (861-947)||(28083526-28083610)
chr5 (843-925)||(37183951-37184032)
chr5 (839-948)||(39524643-39524750)
chr5 (885-948)||(38372221-38372283)
chr5 (839-948)||(6156598-6156705)
chr5 (856-941)||(24203834-24203917)
chr5 (856-948)||(25746911-25747000)
chr5 (861-948)||(15957639-15957723)
chr5 (861-948)||(38871560-38871645)
chr5 (861-948)||(20891501-20891587)
chr5 (839-894)||(31221518-31221572)
chr5 (839-948)||(15799092-15799199)
chr5 (882-943)||(27212617-27212677)
chr5 (867-947)||(36359734-36359812)
chr5 (867-948)||(4064867-4064946)
[»] chr7 (13 HSPs)
chr7 (839-948)||(3936013-3936120)
chr7 (839-942)||(19225751-19225853)
chr7 (843-947)||(42877193-42877295)
chr7 (839-948)||(9151725-9151826)
chr7 (882-948)||(43737071-43737136)
chr7 (852-948)||(37518442-37518536)
chr7 (861-948)||(28230615-28230699)
chr7 (839-948)||(42925788-42925895)
chr7 (856-940)||(36468691-36468772)
chr7 (884-941)||(36629154-36629210)
chr7 (853-906)||(33151126-33151178)
chr7 (891-948)||(36408326-36408383)
chr7 (867-948)||(47202427-47202506)
[»] chr4 (19 HSPs)
chr4 (839-948)||(19835433-19835540)
chr4 (839-948)||(25491542-25491649)
chr4 (839-947)||(40703576-40703683)
chr4 (839-948)||(48319212-48319318)
chr4 (839-948)||(53894138-53894245)
chr4 (839-948)||(7931574-7931678)
chr4 (852-948)||(54631610-54631704)
chr4 (839-948)||(17933284-17933391)
chr4 (839-916)||(18051112-18051188)
chr4 (856-947)||(25752592-25752684)
chr4 (852-948)||(46440421-46440516)
chr4 (839-950)||(52076929-52077038)
chr4 (867-948)||(49396949-49397028)
chr4 (882-948)||(3703397-3703462)
chr4 (882-947)||(50392557-50392622)
chr4 (867-948)||(23523847-23523926)
chr4 (867-948)||(25539095-25539174)
chr4 (867-948)||(32441752-32441831)
chr4 (867-948)||(55052766-55052845)
[»] chr3 (13 HSPs)
chr3 (839-948)||(47123011-47123118)
chr3 (839-948)||(47130377-47130484)
chr3 (839-948)||(34821543-34821650)
chr3 (784-948)||(38977895-38978058)
chr3 (861-948)||(47740079-47740164)
chr3 (839-916)||(4394139-4394215)
chr3 (839-948)||(51540761-51540870)
chr3 (839-948)||(35141982-35142086)
chr3 (856-947)||(48303913-48304002)
chr3 (882-948)||(39149757-39149822)
chr3 (839-948)||(3902953-3903060)
chr3 (882-942)||(51258350-51258408)
chr3 (868-935)||(46622945-46623010)
[»] chr1 (14 HSPs)
chr1 (839-948)||(32817758-32817865)
chr1 (839-948)||(42545873-42545979)
chr1 (839-948)||(7011114-7011221)
chr1 (839-925)||(38885144-38885229)
chr1 (839-948)||(45568023-45568131)
chr1 (839-917)||(49677398-49677475)
chr1 (839-941)||(52744971-52745071)
chr1 (839-948)||(40650822-40650930)
chr1 (839-948)||(40908081-40908188)
chr1 (862-948)||(15069989-15070073)
chr1 (882-947)||(43319344-43319408)
chr1 (891-948)||(44573243-44573299)
chr1 (867-948)||(34162868-34162948)
chr1 (839-879)||(18238242-18238282)
[»] chr8 (14 HSPs)
chr8 (839-948)||(8885600-8885707)
chr8 (783-948)||(42281041-42281201)
chr8 (882-948)||(27928088-27928153)
chr8 (870-948)||(28916719-28916795)
chr8 (839-923)||(40994724-40994806)
chr8 (839-948)||(34853235-34853341)
chr8 (882-948)||(44106170-44106235)
chr8 (861-947)||(41530596-41530680)
chr8 (839-948)||(9073409-9073516)
chr8 (856-948)||(21004312-21004402)
chr8 (839-895)||(27928298-27928353)
chr8 (856-943)||(36404306-36404391)
chr8 (882-948)||(3094628-3094693)
chr8 (882-948)||(16310546-16310611)
[»] scaffold0027 (1 HSPs)
scaffold0027 (839-948)||(142110-142216)
[»] chr2 (12 HSPs)
chr2 (839-948)||(44465870-44465977)
chr2 (839-948)||(45153933-45154040)
chr2 (839-948)||(17474941-17475050)
chr2 (839-948)||(32188011-32188119)
chr2 (839-948)||(33452585-33452692)
chr2 (839-948)||(39447062-39447174)
chr2 (861-948)||(25217932-25218017)
chr2 (839-917)||(41855061-41855138)
chr2 (861-948)||(15995256-15995341)
chr2 (864-948)||(41510570-41510653)
chr2 (856-942)||(25715285-25715371)
chr2 (856-941)||(36949094-36949177)
[»] scaffold0010 (1 HSPs)
scaffold0010 (839-940)||(140513-140612)
[»] scaffold0182 (1 HSPs)
scaffold0182 (839-948)||(23028-23134)
[»] scaffold0508 (1 HSPs)
scaffold0508 (866-941)||(3549-3624)
[»] scaffold0137 (1 HSPs)
scaffold0137 (839-948)||(9644-9751)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-141; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 342 - 698
Target Start/End: Original strand, 860171 - 860523
Alignment:
Q  342 attggtgtagaatatttgagagtgtaattcaaattttcaaatgtgattataattatattcaaaacgattgatcttaagttcttaatgttggtcaaagaac 441  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  860171 attggtgtagaacatttgagaatgtaattcaaattttcaaatgtgattataattatattcaaaacgattgatcttaagttcttaatattggtcaatgaac 860270  T
Q  442 catactatggcacaattaaactcacctgaataagttgcttatttttcaagtagcaaaaattctttgtaggcatttcgtacactgtaaacaataatatcat 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||   || |||||    
T  860271 catactatggcacaattaaactcacctgaataagttgcttattttccaagcagcaaaaattctttgtaggcatttcgtacaccgtaaac---aaaatcat 860367  T
Q  542 agggctaaaagaattcttttggtttaaaaatttaagtgtaaactatttgcattttcaactataaaaatgaaacaagttaaataaatgcatataaaattat 641  Q
    || |||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  860368 agtgctagaagaattattttggtttaaaaatttaagtgt-aactatttgcattttcaactataaaaatgaaataagttaaatacatgcatttaaaattat 860466  T
Q  642 atcctttctcttacgtgaatcaaaatatattttatgagagcaaatttttgaataaat 698  Q
    ||||| ||||||||||||||||||||| ||||| |||||  || |||||||||||||    
T  860467 atcctctctcttacgtgaatcaaaataaattttttgagatgaattttttgaataaat 860523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 449 - 638
Target Start/End: Complemental strand, 867777 - 867584
Alignment:
Q  449 tggcacaattaaactcacctgaataagttgcttatttttcaagtagcaaaaattctttgtaggcattt-cgtacactgtaaacaat----aatatcatag 543  Q
    |||||||||||||||||| ||||| ||||||||||| | |||||| |||||||||||||||| ||||| ||||||| |||||||||    ||||||| ||    
T  867777 tggcacaattaaactcacatgaattagttgcttattatccaagtaacaaaaattctttgtagtcattttcgtacaccgtaaacaattacaaatatcacag 867678  T
Q  544 ggctaaaagaattcttttggtttaaaaatttaagtgtaaactatttgcattttcaactataaaaatgaaacaagttaaataaatgcatataaaat 638  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  867677 ggctaaaagaattattttggtttgaaaatttaagtgtaa-ctatttgcattttcaactataaaaatgaaataagttaaatacatgcatttaaaat 867584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 7412733 - 7412840
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  7412733 aaattaccctcggagcattccggattatataatctggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-gggtttttccggattttgta 7412830  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  7412831 atccggaaac 7412840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 860013 - 860128
Alignment:
Q  187 ttctttggatgtctggagcttcatagattataggttgaacacacttcacccat----gttaaaggctaattaattgaata--tatagtcacattattttc 280  Q
    |||||||||||||| ||||||||||||||| ||||||||||||| ||| | ||    |||||||||||| ||||||||||  |||||||||||||| |||    
T  860013 ttctttggatgtctagagcttcatagattacaggttgaacacacatcatctatccgtgttaaaggctaaataattgaatacatatagtcacattatattc 860112  T
Q  281 atgagatcacaaagaa 296  Q
    ||||||| ||||||||    
T  860113 atgagattacaaagaa 860128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 17264315 - 17264422
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||| ||| ||||||   |||||||| |||| ||||||| |||||||||||||| ||||||||| |||||||||| || |||||||||||||||||    
T  17264315 aaattaccttcggagcattttggattatatgatcctgaatgat-gttttcttttgttacagggtgaaaaaatgagtaac-ggatttttccggattttgta 17264412  T
Q  939 atccggaaac 948  Q
    ||| ||||||    
T  17264413 atctggaaac 17264422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 841 - 948
Target Start/End: Complemental strand, 14587812 - 14587707
Alignment:
Q  841 attaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaat 940  Q
    |||| ||||| |||||||| |||||||||||| |||||  |  ||||||||||||||||||||||| |||||||||  || |||||||||||||||||||    
T  14587812 attatcctcggagcattccggattatataatctggaattgta-ttttcttttgttaaagggtgaaaaaatgagtaa-gggatttttccggattttgtaat 14587715  T
Q  941 ccggaaac 948  Q
    ||| ||||    
T  14587714 ccgaaaac 14587707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 861 - 948
Target Start/End: Complemental strand, 1945762 - 1945676
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| |||||||||||||| |  ||||||||||  ||||||||||| ||||||| || || |||||||||||||||||||||| ||||    
T  1945762 gattttataatccggaatggtgtttttcttttgacaaagggtgaaaaaatgagttac-ggatttttccggattttgtaatccgaaaac 1945676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 856 - 947
Target Start/End: Complemental strand, 4508539 - 4508450
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    |||| |||| |||||||| ||||| | |||||||||||||| ||||||||| |||||||||| || |||||||||||||| |||||| ||||    
T  4508539 ttccggattttataatccagaatggt-gttttcttttgttagagggtgaaaaaatgagtaac-ggatttttccggattttataatccagaaa 4508450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 882 - 948
Target Start/End: Complemental strand, 3717495 - 3717430
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||||||||||||||| |||||||||  ||  ||||||| ||||||||||||||||||    
T  3717495 tgttttcttttgttaaagggtgaaaaaatgagtaa-tgggcttttccgaattttgtaatccggaaac 3717430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 867999 - 867937
Alignment:
Q  189 ctttggatgtctggagcttcatagattataggttgaacacacttcacccatgttaaaggctaa 251  Q
    |||| ||||||| |||||||| |||||| ||| ||||||||| ||| ||||||||||||||||    
T  867999 ctttagatgtctagagcttcaaagattacaggatgaacacacatcatccatgttaaaggctaa 867937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Original strand, 5699491 - 5699570
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| | |||||| ||||||| ||||||||| |  |||| || ||||||||| | ||||||||||||||||||    
T  5699491 ataatccggaatggt-gttttcctttgttatagggtgaaaaatggagttacgggttttttc-gaattttgtaatccggaaac 5699570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Original strand, 32035046 - 32035125
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||| |||||||| |||||||||||||| | | ||||| |  |||| || || |||||||||||||||||||||||||||    
T  32035046 ataatctggaatgat-gttttcttttgttatatgatgaaaaatggagttac-ggatttttccggattttgtaatccggaaac 32035125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 38693037 - 38692929
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||    
T  38693037 aaattaccctcggagcattccggattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaacgggttttttccgaattttgta 38692939  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  38692938 atccggaaac 38692929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 40620244 - 40620137
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| ||||||||||||||||||||||  |||||| ||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||    
T  40620244 aaattaccctcggagcattccagattatataatccataatgat-gttttcttttgttgaagggtgaaaaaatgagtaaca-gatttttccggattttgta 40620147  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  40620146 atccggaaac 40620137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 839 - 947
Target Start/End: Complemental strand, 31929359 - 31929254
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  31929359 aaattaccctcggagcattccggattatataatccggaatga-tgttttcttttgttaaagggtgaaa-aatgagtaac-ggatttttccggattttgta 31929263  T
Q  939 atccggaaa 947  Q
    |||| ||||    
T  31929262 atccagaaa 31929254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 839 - 947
Target Start/End: Original strand, 28108249 - 28108354
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||| || ||||||| |||||||||    
T  28108249 aaattatcctcggagcattccagattatataatccggaatga-tgttttcttttgttaaa-ggtgagaaaatgagtaac-gggtttttccagattttgta 28108345  T
Q  939 atccggaaa 947  Q
    |||||||||    
T  28108346 atccggaaa 28108354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 861 - 947
Target Start/End: Complemental strand, 28083610 - 28083526
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||||||||    
T  28083610 gattatataatccggaatgat-gttttcttttgttaaagggtgagaaaatgagtaac-gggtttttccggattttgtaatccggaaa 28083526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 843 - 925
Target Start/End: Complemental strand, 37184032 - 37183951
Alignment:
Q  843 taccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttt 925  Q
    |||||||| |||||||| |||||||||||||||||| || ||||||||||||||| |||||||| |||||||||||| |||||    
T  37184032 taccctcggagcattccggattatataatccggaataat-gttttcttttgttaacgggtgaaaaaatgagtaacagattttt 37183951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 39524643 - 39524750
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||| | ||| ||||||||  ||||| ||||||| |||||| |||||||||||||||||||||||| |||||| ||  || |||||||||||||||||    
T  39524643 aaattatcttcggagcattccgaattatgtaatccgaaatgat-gttttcttttgttaaagggtgaaaaaatgagcaa-tggatttttccggattttgta 39524740  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  39524741 atccggaaac 39524750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 885 - 948
Target Start/End: Original strand, 38372221 - 38372283
Alignment:
Q  885 tttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||||||||||||||||||| |||||||||| || |||||| ||||||||||||||||||||    
T  38372221 tttcttttgttaaagggtgaaaaaatgagtaac-ggatttttctggattttgtaatccggaaac 38372283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 6156598 - 6156705
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| ||||  ||||||||||||| | |||||| ||||||| | ||||||| |  |||| || |||||| |||||||||||||    
T  6156598 aaattaccctcggagcattccggatttcataatccggaatggt-gttttcctttgttatatggtgaaaaatggagttacgggtttt-tccggattttgta 6156695  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  6156696 atccggaaac 6156705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 856 - 941
Target Start/End: Complemental strand, 24203917 - 24203834
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatc 941  Q
    |||| |||| |||||||||||||| | ||||||||||||||||||||| || ||||| |||||| |||||| ||||||||||||||    
T  24203917 ttccggattttataatccggaatggt-gttttcttttgttaaagggtggaaaaatgattaacagatttttt-cggattttgtaatc 24203834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 856 - 948
Target Start/End: Original strand, 25746911 - 25747000
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| |||| |||||| ||||||||| |||||||||||||||| | ||||| |||||||||| || |||||||||||||| ||||||||||||    
T  25746911 ttccggattttataattcggaatgat-gttttcttttgttaaaag-tgaaaaaatgagtaac-ggatttttccggattttctaatccggaaac 25747000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 861 - 948
Target Start/End: Original strand, 15957639 - 15957723
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| ||||||||| |||| | |||||||||||||||||||||||| |||||||||  || ||||||||||||||||||| |||||||    
T  15957639 gattttataatccgaaatggt-gttttcttttgttaaagggtgaaa-aatgagtaa-tggatttttccggattttgtaattcggaaac 15957723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 861 - 948
Target Start/End: Original strand, 38871560 - 38871645
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| |||||||||||||| | ||||||||||||||||  || ||| |||||||||| || |||||||||||||||||||||| ||||    
T  38871560 gattttataatccggaatggt-gttttcttttgttaaaaagttaaaaaatgagtaac-ggatttttccggattttgtaatccgaaaac 38871645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 861 - 948
Target Start/End: Original strand, 20891501 - 20891587
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaa-tgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| ||||||||| |||| | |||||||||| ||||| ||||||| || |||||||| || |||||||||||||||||||||||||||    
T  20891501 gattttataatccgaaatggt-gttttcttttattaaatggtgaaaaaaatgagtaac-ggatttttccggattttgtaatccggaaac 20891587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 839 - 894
Target Start/End: Complemental strand, 31221572 - 31221518
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgt 894  Q
    |||||| |||||||||||| | |||||||||||||||||||| |||||||||||||    
T  31221572 aaattatcctcgaagcatttcggattatataatccggaatga-tgttttcttttgt 31221518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 15799092 - 15799199
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||| ||  |||||||| ||||  ||||||||||||| |  ||||| ||||||| ||||||||| |  |||| || |||||| |||||||||||||    
T  15799092 aaattaccatctgagcattccggatttcataatccggaatggta-ttttcctttgttatagggtgaaaaatggagttacgggtttt-tccggattttgta 15799189  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  15799190 atccggaaac 15799199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 882 - 943
Target Start/End: Original strand, 27212617 - 27212677
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccg 943  Q
    ||||||| ||||||| ||||||||| ||||||| || ||||||||| |||||||||||||||    
T  27212617 tgttttcctttgttatagggtgaaaaaatgagttacgggttttttc-ggattttgtaatccg 27212677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 867 - 947
Target Start/End: Complemental strand, 36359812 - 36359734
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    |||||| ||||||  ||||||||||||||||||||||||| ||||||| || ||  |||| ||||||||||||||| ||||    
T  36359812 ataatctggaatgggtgttttcttttgttaaagggtgaaa-aatgagttac-ggaatttttcggattttgtaatccagaaa 36359734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Complemental strand, 4064946 - 4064867
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| | |||||| ||||||| ||||||||| |  |||| || ||||||| ||||||| ||||||||||||||    
T  4064946 ataatccggaatggt-gttttcctttgttatagggtgaaaaatggagttacgggttttt-ccggattatgtaatccggaaac 4064867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 3936013 - 3936120
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| || |||||||||||||||||    
T  3936013 aaattaccctcggagcattccggattatataatccggaatga-tgttttcttttgttaaagagtgaaaaaatgagtaac-gggtttttccggattttgta 3936110  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  3936111 atccggaaac 3936120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 839 - 942
Target Start/End: Complemental strand, 19225853 - 19225751
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||| |||  |||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  19225853 aaattactctcagagcattccagattatataattcgaaatgat-gttttcttttgttaaagggtgaaaaaatgagtaacggattttttccggattttgta 19225755  T
Q  939 atcc 942  Q
    ||||    
T  19225754 atcc 19225751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 843 - 947
Target Start/End: Complemental strand, 42877295 - 42877193
Alignment:
Q  843 taccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatcc 942  Q
    |||||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||     
T  42877295 taccctcagagcattccggattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-gtgtttttccggattttgtaatcg 42877198  T
Q  943 ggaaa 947  Q
    |||||    
T  42877197 ggaaa 42877193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 9151725 - 9151826
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||||||||||||||||| |||||||||||||||||||||       |||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  9151725 aaattaccctcgaagcattccggattatataatccggaatgatg------ttttgt-aaagggtgaaaaaatgagtaacagg-tttttccggattttgta 9151816  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  9151817 atccggaaac 9151826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 882 - 948
Target Start/End: Original strand, 43737071 - 43737136
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  43737071 tgttttcttttgttaaagggtgaaaaaatgagtaac-ggatttttccggattttgtaatccggaaac 43737136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 852 - 948
Target Start/End: Complemental strand, 37518536 - 37518442
Alignment:
Q  852 agcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||| ||||||||||||  |||||| |||||||||| ||||||||||||| ||| |||||| || |||||||||||||| |||||| |||||    
T  37518536 agcattccatattatataatccaaaatgat-gttttcttttattaaagggtgaaaaaataagtaac-ggatttttccggattttataatccagaaac 37518442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 861 - 948
Target Start/End: Complemental strand, 28230699 - 28230615
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| |||||||| ||||| | |||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||||    
T  28230699 gattttataatccagaatggt-gttttcttttgttaaagggtaaaa-aatgagtaac-ggatttttccggattttgtaatccggaaac 28230615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 42925895 - 42925788
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| ||||  |||||||||||||  ||||||| ||||||| ||||||||| |  |||| || || ||||||| |||||||||    
T  42925895 aaattaccctcggagcattccggatttcataatccggaatg-gtgttttcctttgttatagggtgaaaaatggagttac-gggtttttcctgattttgta 42925798  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  42925797 atccggaaac 42925788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 856 - 940
Target Start/End: Complemental strand, 36468772 - 36468691
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaat 940  Q
    ||||| ||| |||||| ||||||||| |||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||    
T  36468772 ttccaaattttataattcggaatgat-gttttcttttgttaaagg-tgaaaaaatgagtaac-ggatttttccggattttgtaat 36468691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 884 - 941
Target Start/End: Original strand, 36629154 - 36629210
Alignment:
Q  884 ttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatc 941  Q
    ||||||||||||| ||||||||| |||||||||| || ||||||||||||||||||||    
T  36629154 ttttcttttgttagagggtgaaaaaatgagtaac-ggatttttccggattttgtaatc 36629210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 853 - 906
Target Start/End: Original strand, 33151126 - 33151178
Alignment:
Q  853 gcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaa 906  Q
    ||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||    
T  33151126 gcattccggattatataatctagaatgat-gttttcttttgttaaagggtgaaa 33151178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 891 - 948
Target Start/End: Original strand, 36408326 - 36408383
Alignment:
Q  891 ttgttaaagggtgaaagaa-tgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||||||||||||| || |||||||| || ||||||||||||||||||||| |||||    
T  36408326 ttgttaaagggtgaaaaaaatgagtaac-ggatttttccggattttgtaatccagaaac 36408383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Original strand, 47202427 - 47202506
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| | |||||||||||||| ||||||||| |  |||| || || ||||||| |||||||||||||| ||||    
T  47202427 ataatccggaatggt-gttttcttttgttatagggtgaaaaatggagttac-ggatttttccagattttgtaatccgaaaac 47202506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 19835433 - 19835540
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||| |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  19835433 aaattactctcggagcattccggattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-gggtttttccggattttgta 19835530  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  19835531 atccggaaac 19835540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 25491649 - 25491542
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||| | ||| ||||||| | |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||| |||||||||||    
T  25491649 aaattatcttcggagcattcaaaattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaacgagtttttt-cggattttgta 25491552  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  25491551 atccggaaac 25491542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 839 - 947
Target Start/End: Original strand, 40703576 - 40703683
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaa-gaatgagtaacaggttttttccggattttgt 937  Q
    |||||||||||| ||||||||  || |||||||| |||||||| |||||||||| ||||||||||||| ||||||||||| || ||||||||||||||||    
T  40703576 aaattaccctcggagcattccgaataatataatctggaatgat-gttttctttttttaaagggtgaaaagaatgagtaac-ggatttttccggattttgt 40703673  T
Q  938 aatccggaaa 947  Q
    ||||||||||    
T  40703674 aatccggaaa 40703683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 48319318 - 48319212
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||||||||||||||||| |||||| ||||||  |||||| |||||||||||||||||||||||| ||||||| || || |||||||||| ||||||    
T  48319318 aaattaccctcgaagcattccggattatttaatccacaatgat-gttttcttttgttaaagggtgaaaaaatgagtgac-ggatttttccgga-tttgta 48319222  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  48319221 atccggaaac 48319212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 53894245 - 53894138
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||| ||||| ||||||||  |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| || ||||||||||||||| |    
T  53894245 aaattatcctcggagcattccgaattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgactaac-gggtttttccggattttgca 53894148  T
Q  939 atccggaaac 948  Q
    ||| ||||||    
T  53894147 atcaggaaac 53894138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 7931574 - 7931678
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||| ||  |||||||| |||||||||||||||||||    ||||||||||||||||||||||| |||||||||| || ||||||||||||||| |    
T  7931574 aaattaccgtcagagcattccggattatataatccggaatg----ttttcttttgttaaagggtgaaaaaatgagtaac-gggtttttccggattttgca 7931668  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  7931669 atccggaaac 7931678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 852 - 948
Target Start/End: Complemental strand, 54631704 - 54631610
Alignment:
Q  852 agcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||| | ||||||||||||||||||||  ||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||    
T  54631704 agcattacggattatataatccggaatgac-gttttcttttgttaaagggtggaaaaatgagtaac-gggtttttccggattttgtaatccggaaac 54631610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 17933391 - 17933284
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||| || ||||| |||| || ||||||| |||||||||    
T  17933391 aaattaccttcggagcattccggattatataatctggaatga-tgttttcttttgttaaagggtgcaaaaatgaataac-ggatttttccagattttgta 17933294  T
Q  939 atccggaaac 948  Q
    |||| |||||    
T  17933293 atccagaaac 17933284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 839 - 916
Target Start/End: Complemental strand, 18051188 - 18051112
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaa 916  Q
    |||||| ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  18051188 aaattatcctcggagcattccagattatataatctggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaa 18051112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 856 - 947
Target Start/End: Complemental strand, 25752684 - 25752592
Alignment:
Q  856 ttccagattatataatccggaatgat-tgttttcttttgttaaagggtgaaagaa-tgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    |||| |||| |||||||||||||||| | |||| |||||||||| ||||||| || |||||||  || ||||||||||||||||||||||||||    
T  25752684 ttccggattttataatccggaatgatgtttttttttttgttaaaaggtgaaaaaaatgagtaat-ggatttttccggattttgtaatccggaaa 25752592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 852 - 948
Target Start/End: Complemental strand, 46440516 - 46440421
Alignment:
Q  852 agcattccagattatataatccggaatgattgttttcttttgttaaagggtg-aaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||| ||||||||||||| |||||||| ||| ||||||||||||||| || ||| ||||| |||| || |||||||| ||||| ||||||||||||    
T  46440516 agcatttcagattatataattcggaatga-tgtattcttttgttaaaggatgaaaaaaatgaataac-gggtttttccgaattttataatccggaaac 46440421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 839 - 950
Target Start/End: Original strand, 52076929 - 52077038
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||| | |||||||||| | |||||||||||| | |||||| |||||||||||||||| |||||||  ||||||||  || |||||||||||    ||    
T  52076929 aaattatcttcgaagcatttcggattatataatcggaaatgat-gttttcttttgttaaatggtgaaaagatgagtaa-tgggtttttccggatcacata 52077026  T
Q  939 atccggaaacct 950  Q
    ||||||||||||    
T  52077027 atccggaaacct 52077038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 867 - 948
Target Start/End: Original strand, 49396949 - 49397028
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||||| |||||| ||| ||| ||||||||| |  |||| || || |||||||||||||||||||||||||||    
T  49396949 ataatccggaatgat-gttttcctttattatagggtgaaaaatggagttac-ggatttttccggattttgtaatccggaaac 49397028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 882 - 948
Target Start/End: Complemental strand, 3703462 - 3703397
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||| ||||||| ||||||||| ||||||| || | ||||||| ||||||||||||||| ||||    
T  3703462 tgttttcctttgttatagggtgaaaaaatgagttacggattttttc-ggattttgtaatccgaaaac 3703397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 882 - 947
Target Start/End: Complemental strand, 50392622 - 50392557
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaa-tgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    ||||||| |||||||||| |||||| || ||||| || || ||||||||||||||||||||||||||    
T  50392622 tgttttcctttgttaaagagtgaaaaaaatgagttac-ggatttttccggattttgtaatccggaaa 50392557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Original strand, 23523847 - 23523926
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||| ||||||||| |||||| ||||||| ||||||||| |  |||| || | ||||||| ||||||||||||||||||||    
T  23523847 ataattcggaatgat-gttttcctttgttagagggtgaaaaatggagttacggattttttc-ggattttgtaatccggaaac 23523926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Complemental strand, 25539174 - 25539095
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| | |||||| ||||||| | ||||||| |  |||| || ||||||| ||||||||||||||||||||||    
T  25539174 ataatccggaatggt-gttttcctttgttatatggtgaaaaatggagttacgggttttt-ccggattttgtaatccggaaac 25539095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Original strand, 32441752 - 32441831
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| | |||||| ||||||| ||||||||| |  |||| | ||| |||||| ||||||||||||||||||||    
T  32441752 ataatccggaatggt-gttttcctttgttatagggtgaaaaatggagtta-aggatttttctggattttgtaatccggaaac 32441831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 948
Target Start/End: Complemental strand, 55052845 - 55052766
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| | |||||| ||||||| ||||||||| |  |||| || ||||||| ||||||| ||||||||||||||    
T  55052845 ataatccggaatggt-gttttcctttgttatagggtgaaaaatggagttacgggttttt-ccggattatgtaatccggaaac 55052766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 47123011 - 47123118
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| || |||||||| ||||||||    
T  47123011 aaattaccctcggagcattccagattatataatctggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-gggtttttccgaattttgta 47123108  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  47123109 atccggaaac 47123118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 47130377 - 47130484
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| || |||||||| ||||||||    
T  47130377 aaattaccctcggagcattccagattatataatctggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-gggtttttccgaattttgta 47130474  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  47130475 atccggaaac 47130484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 34821650 - 34821543
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| || |||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||  ||||||||||||||||    
T  34821650 aaattaccctcgtagtattccagattatataatccggaatg-gtgttttcttttgttaaagggtgaaaaaatgagtaac-ggaattttccggattttgta 34821553  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  34821552 atccggaaac 34821543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 784 - 948
Target Start/End: Complemental strand, 38978058 - 38977895
Alignment:
Q  784 agcattactttttccaccatatgccttttcctcgcgcgctctannnnnnnnct--ccaaattaccctcgaagcattccagattatataatccggaatgat 881  Q
    |||||||||||||||||| ||||||||| |||||||||| |||        ||  |||||||||||| | |||||||| |||||||||||| ||||||      
T  38978058 agcattactttttccaccctatgccttt-cctcgcgcgccctattttttttcttcccaaattacccttggagcattccggattatataatctggaatg-g 38977961  T
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||| |||||||||||||||||| ||| |||||| || ||||||  |||||||||||||||||||    
T  38977960 tgttttattttgttaaagggtgaaaaaataagtaac-ggatttttctagattttgtaatccggaaac 38977895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 861 - 948
Target Start/End: Complemental strand, 47740164 - 47740079
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| | ||||||| |||||||||||||||||||    
T  47740164 gattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgagcaaca-gatttttccagattttgtaatccggaaac 47740079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 839 - 916
Target Start/End: Original strand, 4394139 - 4394215
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaa 916  Q
    |||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  4394139 aaattatcctcggagcattccagattatataatctggaatga-tgttttcttttgttaaagggtgaaaaaatgagtaa 4394215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 51540870 - 51540761
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtg--aaagaatgagtaacaggttttttccggattttg 936  Q
    |||||||||||| ||||||||||||| ||||||||| ||||  ||||||||||||||||||||||  ||| |||||||||| || |||||| ||||||||    
T  51540870 aaattaccctcggagcattccagattttataatccgaaatg-gtgttttcttttgttaaagggtgaaaaaaaatgagtaac-ggatttttctggattttg 51540773  T
Q  937 taatccggaaac 948  Q
     |||||||||||    
T  51540772 gaatccggaaac 51540761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 35141982 - 35142086
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| |||||||||||||||||||  |||| |||||||||||||||||||| |   |||||| || ||||||||| |||||||    
T  35141982 aaattaccctcggagcattccggattatataatccggaatg-gtgttatcttttgttaaagggtgaaaaa---agtaac-ggatttttccgggttttgta 35142076  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  35142077 atccggaaac 35142086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 856 - 947
Target Start/End: Original strand, 48303913 - 48304002
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    |||||||||  ||||||||||||| | |||||| ||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||    
T  48303913 ttccagatttcataatccggaatggt-gttttcctttgttaaagggtgaaaaaatgagttac-ggatttttccggattttgtaatccggaaa 48304002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 882 - 948
Target Start/End: Original strand, 39149757 - 39149822
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||||||||||||||| ||| || ||| || ||||||||||||||||||||| |||||    
T  39149757 tgttttcttttgttaaagggtgaaaaaattagcaac-ggatttttccggattttgtaatccagaaac 39149822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 3903060 - 3902953
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||||| |||||| ||||  |||||||||||||  ||||||| ||||||| |||||||||    |||| || || |||||||||||||||||    
T  3903060 aaattaccctcgaatcattccggatttcataatccggaatg-gtgttttcctttgttatagggtgaaaagtggagttactgg-tttttccggattttgta 3902963  T
Q  939 atccggaaac 948  Q
    ||||| ||||    
T  3902962 atccgaaaac 3902953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 882 - 942
Target Start/End: Original strand, 51258350 - 51258408
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatcc 942  Q
    ||||||| ||||||||||||||||| ||||||| || || |||||||||||||||||||||    
T  51258350 tgttttcctttgttaaagggtgaaa-aatgagttac-ggatttttccggattttgtaatcc 51258408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 868 - 935
Target Start/End: Complemental strand, 46623010 - 46622945
Alignment:
Q  868 taatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggatttt 935  Q
    ||||| |||||||| |||||||||||||||| | ||||| |||||||||| || ||||||||||||||    
T  46623010 taatctggaatgat-gttttcttttgttaaatgatgaaaaaatgagtaac-ggatttttccggatttt 46622945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 32817865 - 32817758
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||| |||||||||    
T  32817865 aaattaccctcggagcattccggattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-gggtttttccagattttgta 32817768  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  32817767 atccggaaac 32817758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 42545873 - 42545979
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||| |||||||||||||||||||| ||||| |||| || |||||||||||||||||    
T  42545873 aaattaccctcggagcattccagattatataatccggaatg-gtgttatcttttgttaaagggtgaaa-aatgaataac-ggatttttccggattttgta 42545969  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  42545970 atccggaaac 42545979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 7011114 - 7011221
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| ||||||||| |||||||||| ||||| | | ||||||| |||||||||||||||| |||||||||| | ||||||| ||||||||||    
T  7011114 aaattaccctcggagcattccatattatataattcggaaaggt-gttttctattgttaaagggtgaaa-aatgagtaacggattttttctggattttgta 7011211  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  7011212 atccggaaac 7011221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 839 - 925
Target Start/End: Original strand, 38885144 - 38885229
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttt 925  Q
    |||||||| ||| |||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| |||||    
T  38885144 aaattaccttcggagcattccggattatataatccggaatggt-gttttcttttgttaaagggtgaaaaaatgagtaacagattttt 38885229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 45568131 - 45568023
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtg-aaagaatgagtaacaggttttttccggattttgt 937  Q
    |||||||||||| |||||| | |||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||| || |||||||| |||||||    
T  45568131 aaattaccctcggagcatttcggattatataatccggaatga-tattttcttttgttaaagggtgaaaaaaatgagtaac-gggtttttccgaattttgt 45568034  T
Q  938 aatccggaaac 948  Q
    ||| |||||||    
T  45568033 aattcggaaac 45568023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 839 - 917
Target Start/End: Original strand, 49677398 - 49677475
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaac 917  Q
    |||||||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  49677398 aaattaccctcggagcattccggattatataatccggaatg-gtgttttcttttgttaaagggtgaaaaaatgagtaac 49677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 839 - 941
Target Start/End: Complemental strand, 52745071 - 52744971
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| ||||||||||||  |||||| | |||||||||||||||| |||||| |||||||||| || |||||||| ||||||||    
T  52745071 aaattaccctcggagcattccggattatataatctagaatga-tattttcttttgttaaagtgtgaaaaaatgagtaac-ggatttttccgaattttgta 52744974  T
Q  939 atc 941  Q
    |||    
T  52744973 atc 52744971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 40650930 - 40650822
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtg-aaagaatgagtaacaggttttttccggattttgt 937  Q
    |||||||| ||| ||||||||  ||||||||||||||||||  |||||||||||||||||| ||| ||| |||||||||| || ||||| |||| |||||    
T  40650930 aaattaccttcggagcattccgaattatataatccggaatg-gtgttttcttttgttaaagcgtgaaaaaaatgagtaac-ggattttttcggaatttgt 40650833  T
Q  938 aatccggaaac 948  Q
    |||||||||||    
T  40650832 aatccggaaac 40650822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 40908188 - 40908081
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||| |||| | ||||||||||| ||||||||| |||| | |||||||||||||||||||||||| |||||||||| || |||||  | |||||| |    
T  40908188 aaattactctcggatcattccagattttataatccgaaatggt-gttttcttttgttaaagggtgaaaaaatgagtaac-ggattttttagaattttgca 40908091  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  40908090 atccggaaac 40908081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 862 - 948
Target Start/End: Complemental strand, 15070073 - 15069989
Alignment:
Q  862 attatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||  |||||||||| || | ||| |||||||||||||||||||||    
T  15070073 attatataatccgaaatgat-gttttcttttgttaaagggagaacaaatgagtaac-ggatattttcggattttgtaatccggaaac 15069989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 882 - 947
Target Start/End: Complemental strand, 43319408 - 43319344
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    ||||||| ||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||    
T  43319408 tgttttcctttgttaaagggtgaaaaaatgagttac-ggatttttccggattttgtaatccggaaa 43319344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 891 - 948
Target Start/End: Complemental strand, 44573299 - 44573243
Alignment:
Q  891 ttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||    
T  44573299 ttgttaaagggtgaaaaaatgagtaacagatttttt-cggattttgtaatccggaaac 44573243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 867 - 948
Target Start/End: Complemental strand, 34162948 - 34162868
Alignment:
Q  867 ataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||| | |||||| ||||||| ||||||||| |  ||||  | ||||||||||||||||||||||||||||||    
T  34162948 ataatccggaatggt-gttttcctttgttatagggtgaaaaatggagttgcgggttttttccggattttgtaatccggaaac 34162868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 839 - 879
Target Start/End: Original strand, 18238242 - 18238282
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatg 879  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18238242 aaattaccctcggagcattccagattatataatccggaatg 18238282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 5e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 8885707 - 8885600
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| || |||||||||||||||||    
T  8885707 aaattaccctcggaccattccggattatataatccggaatgat-gttttcttttgttaaagagtgaaaaaatgagtaac-gggtttttccggattttgta 8885610  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  8885609 atccggaaac 8885600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 783 - 948
Target Start/End: Complemental strand, 42281201 - 42281041
Alignment:
Q  783 gagcattactttttccaccatatgccttttcctcgcgcgctctannnnnnnnctccaaattaccctcgaagcattccagattatataatccggaatgatt 882  Q
    |||||||||||||||||||||||| |||| |||||||||| |||        |   |||||||||| | | ||||||  ||||||||||||||||||||     
T  42281201 gagcattactttttccaccatatgtcttt-cctcgcgcgccctatttttttcca--aaattacccttggaacattccgaattatataatccggaatgat- 42281106  T
Q  883 gttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||| |||||||||||||||||| |||||||||| || ||||||||||||| |||||||| ||||    
T  42281105 gtttttttttgttaaagggtgaaaaaatgagtaac-ggatttttccggatttcgtaatccgaaaac 42281041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 882 - 948
Target Start/End: Complemental strand, 27928153 - 27928088
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||    
T  27928153 tgttttcttttgttaaagggtgaaaaaatgagtaac-ggatttttccggattttgtaatccggaaac 27928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 870 - 948
Target Start/End: Original strand, 28916719 - 28916795
Alignment:
Q  870 atccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||    
T  28916719 atccggaatgat-gttttcttttgttaaagggtgaaaaaatgggtaac-gggtttttccggattttgtaatccggaaac 28916795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 839 - 923
Target Start/End: Original strand, 40994724 - 40994806
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttt 923  Q
    |||||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |||||    
T  40994724 aaattaccctcggagctttccggattatataatccggaatga-tgttttcttttgttaaagggtgaaa-aatgagaaacgggttt 40994806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 34853235 - 34853341
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||| |||| ||||||||| |||||||||| ||||||||| ||||| |||||||||||||| | | ||||||||   || |||||||||||||||||    
T  34853235 aaattacactcggagcattccaaattatataattcggaatgat-gttttattttgttaaagggtaagaaaatgagtac--gggtttttccggattttgta 34853331  T
Q  939 atccggaaac 948  Q
    ||||| ||||    
T  34853332 atccgaaaac 34853341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 882 - 948
Target Start/End: Original strand, 44106170 - 44106235
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||    
T  44106170 tgttttcttttgttaaagggtgaaaaaatgagtaac-ggatttttccagattttgtaatccggaaac 44106235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 861 - 947
Target Start/End: Original strand, 41530596 - 41530680
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaa 947  Q
    |||| |||||||||||||||| |||||| |||||||||||||| || ||||||| || || |||||||| |||||||||||||||||    
T  41530596 gattttataatccggaatgat-gttttcctttgttaaagggtggaaaaatgagttac-ggatttttccgaattttgtaatccggaaa 41530680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 9073409 - 9073516
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||| ||| || ||||| ||||||||||| || |||||| |||||||||||||||||||| ||| |||||||||| ||  |||| |||||||  ||    
T  9073409 aaattaccttcggagtattccggattatataattcgaaatgat-gttttcttttgttaaagggttaaaaaatgagtaac-ggactttttcggatttgtta 9073506  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  9073507 atccggaaac 9073516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 856 - 948
Target Start/End: Original strand, 21004312 - 21004402
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||||||||  ||||||||||||| | |||||| ||||||| ||||||||| |  |||| || || |||||||||||||||||||||||||||    
T  21004312 ttccagatttcataatccggaatggt-gttttcctttgttatagggtgaaaaatggagttac-ggatttttccggattttgtaatccggaaac 21004402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 895
Target Start/End: Complemental strand, 27928353 - 27928298
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgtt 895  Q
    |||||||||||| |||||||| |||||||||||| ||||||| |||||| |||||||    
T  27928353 aaattaccctcggagcattccggattatataatcgggaatga-tgtttttttttgtt 27928298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 943
Target Start/End: Complemental strand, 36404391 - 36404306
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccg 943  Q
    |||| |||| ||||||||||||||   |||| | ||||||||||||||||| ||||||| || || || |||||||||||||||||||    
T  36404391 ttccggattttataatccggaatgga-gtttccctttgttaaagggtgaaaaaatgagttac-ggattattccggattttgtaatccg 36404306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 882 - 948
Target Start/End: Original strand, 3094628 - 3094693
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||| ||||||| ||||||||| |  |||| || |||||| |||||||||||||||||||||||    
T  3094628 tgttttcctttgttatagggtgaaaaatggagttacgggtttt-tccggattttgtaatccggaaac 3094693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 882 - 948
Target Start/End: Original strand, 16310546 - 16310611
Alignment:
Q  882 tgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||| |||||||  |||||||| |  |||| ||||||||| |||||||||||||||||||||||    
T  16310546 tgttttcctttgttatggggtgaaaaatggagttacaggtttt-tccggattttgtaatccggaaac 16310611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 142216 - 142110
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||| | ||||||| |||||||||    
T  142216 aaattaccctcggagcattccagattatataattcggaatga-tgttttcttttgttaaagggtgaaa-aatgtgtaaca-gatttttccagattttgta 142120  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  142119 atccggaaac 142110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 44465977 - 44465870
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||| |||| || ||||  ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||    
T  44465977 aaattactctcggagtattcaggattatataatccagaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-ggatttttccggattttgta 44465880  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  44465879 atccggaaac 44465870  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 45154040 - 45153933
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||| | ||||||||    
T  45154040 aaattaccctcagagcattccggattatataatccggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-gggtttttctgaattttgta 45153943  T
Q  939 atccggaaac 948  Q
    ||| ||||||    
T  45153942 atctggaaac 45153933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 17475050 - 17474941
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatcc--ggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttg 936  Q
    |||||||||||| |||||||| |||||||||||||  ||||| | ||||||||||||||||| ||||||| |||||||||| || |||||||||||||||    
T  17475050 aaattaccctcggagcattccggattatataatccggggaat-aatgttttcttttgttaaaaggtgaaaaaatgagtaac-ggatttttccggattttg 17474953  T
Q  937 taatccggaaac 948  Q
    ||||||||||||    
T  17474952 taatccggaaac 17474941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 32188119 - 32188011
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtg-aaagaatgagtaacaggttttttccggattttgt 937  Q
    |||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||| || |||||| |||||||||    
T  32188119 aaattaccctcggagcattccggattgtataatccggaatga-tgttttcttttgttaaagggtgaaaaaaatgagtaac-gggtttttctggattttgt 32188022  T
Q  938 aatccggaaac 948  Q
    |||| ||||||    
T  32188021 aatctggaaac 32188011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 33452692 - 33452585
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| || ||||| |||||||||||||| |||||| ||||||||||||||||||||| || |||||||||| || |||||| ||||||||||    
T  33452692 aaattaccctcggagtattccggattatataatccgaaatgat-gttttcttttgttaaagggtggaaaaatgagtaac-ggatttttctggattttgta 33452595  T
Q  939 atccggaaac 948  Q
    || |||||||    
T  33452594 attcggaaac 33452585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 39447062 - 39447174
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatcc-----ggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggatt 933  Q
    |||||||| ||| |||||||| |||||||||||||     |||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||    
T  39447062 aaattaccttcggagcattccggattatataatccagaacggaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-ggatttttccggatt 39447159  T
Q  934 ttgtaatccggaaac 948  Q
    |||||||||| ||||    
T  39447160 ttgtaatccgaaaac 39447174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 861 - 948
Target Start/End: Complemental strand, 25218017 - 25217932
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||    
T  25218017 gattttataatccgcaatgat-gttttcttttgttaaagggtgaaaaaatgagtaac-ggattttttcggattttgtaatccggaaac 25217932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 839 - 917
Target Start/End: Complemental strand, 41855138 - 41855061
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaac 917  Q
    |||||||||||| |||||||| |||||||||||||||||||  |||||||| |||||||||||||||| ||||||||||    
T  41855138 aaattaccctcggagcattccggattatataatccggaatg-gtgttttctgttgttaaagggtgaaaaaatgagtaac 41855061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 861 - 948
Target Start/End: Complemental strand, 15995341 - 15995256
Alignment:
Q  861 gattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    |||| |||||||||||||| | |||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||| ||||||    
T  15995341 gattttataatccggaatggt-gttttcttttgttaaagggtgaaaaaattagtaac-gggtttttccggattttgtaatcgggaaac 15995256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 864 - 948
Target Start/End: Complemental strand, 41510653 - 41510570
Alignment:
Q  864 tatataatccggaatgattgttttcttttgttaaagggtg-aaagaatgagtaacaggttttttccggattttgtaatccggaaac 948  Q
    ||||||||||| |||| | |||||||||||| |||||||| ||| |||||||||| || ||||||| ||||| |||||||||||||    
T  41510653 tatataatccgaaatggt-gttttcttttgtaaaagggtgaaaaaaatgagtaac-ggatttttccagatttcgtaatccggaaac 41510570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 856 - 942
Target Start/End: Original strand, 25715285 - 25715371
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaac-aggttttttccggattttgtaatcc 942  Q
    |||| |||| |||||||||||||| | |||||| ||||||||||||||||| ||||||| || |  |||||| |||| ||||||||||    
T  25715285 ttccggattttataatccggaatggt-gttttcctttgttaaagggtgaaaaaatgagttacaaattttttttcggactttgtaatcc 25715371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 856 - 941
Target Start/End: Complemental strand, 36949177 - 36949094
Alignment:
Q  856 ttccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgtaatc 941  Q
    |||||||||  ||||||||||||| | |||||| ||||||| ||||||||| |  |||| || || ||||||||||||||||||||    
T  36949177 ttccagatttcataatccggaatggt-gttttcctttgttatagggtgaaaaatggagttac-ggatttttccggattttgtaatc 36949094  T

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Target: scaffold0010 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 839 - 940
Target Start/End: Original strand, 140513 - 140612
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    ||||||||| || |||||| | |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||    
T  140513 aaattacccccggagcatttcggattatataatccggaatga-tgttttcttttgttaaaaggtgaaaaaatgagtaa-aggatttttccggattttgta 140610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 839 - 948
Target Start/End: Original strand, 23028 - 23134
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| || |||||||||||||||||||| ||| | |||||||||||||| |||||||||| |||||||||| || |||||||| ||||| ||    
T  23028 aaattaccctcggagtattccagattatataatccgtaatta-tgttttcttttgttgaagggtgaaa-aatgagtaac-ggatttttccgaattttata 23124  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  23125 atccggaaac 23134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 866 - 941
Target Start/End: Complemental strand, 3624 - 3549
Alignment:
Q  866 tataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaac-aggttttttccggattttgtaatc 941  Q
    |||||||||||||| | |||||||||||||||||||||||| |||||||||| |  |||||| || |||||||||||    
T  3624 tataatccggaatggt-gttttcttttgttaaagggtgaaaaaatgagtaacgaattttttttcgaattttgtaatc 3549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 839 - 948
Target Start/End: Complemental strand, 9751 - 9644
Alignment:
Q  839 aaattaccctcgaagcattccagattatataatccggaatgattgttttcttttgttaaagggtgaaagaatgagtaacaggttttttccggattttgta 938  Q
    |||||||||||| |||||||| ||||  ||||| ||||||  | |||||| ||||||| ||||||||| |  |||| || ||||||| ||| ||||||||    
T  9751 aaattaccctcggagcattccggatttcataattcggaattgt-gttttcctttgttatagggtgaaaaatagagttacgggttttt-ccgaattttgta 9654  T
Q  939 atccggaaac 948  Q
    ||||||||||    
T  9653 atccggaaac 9644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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