View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-21 (Length: 123)

Name: NF5975-Insertion-21
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-21
NF5975-Insertion-21
[»] chr4 (3 HSPs)
chr4 (9-123)||(34763779-34763893)
chr4 (9-123)||(34780219-34780333)
chr4 (9-123)||(34755803-34755917)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 7e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 34763893 - 34763779
Alignment:
Q  9 ggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34763893 ggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctg 34763794  T
Q  109 ctattagtcgtctta 123  Q
    |||||||||||||||    
T  34763793 ctattagtcgtctta 34763779  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 7e-59
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 34780219 - 34780333
Alignment:
Q  9 ggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34780219 ggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctg 34780318  T
Q  109 ctattagtcgtctta 123  Q
    |||||||||||||||    
T  34780319 ctattagtcgtctta 34780333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 6e-47
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 34755917 - 34755803
Alignment:
Q  9 ggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctg 108  Q
    ||||||||||||||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34755917 ggttccatgcctaccattgttgcctcaacccctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctg 34755818  T
Q  109 ctattagtcgtctta 123  Q
    |||||||||||||||    
T  34755817 ctattagtcgtctta 34755803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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