View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5975-Insertion-4 (Length: 860)
Name: NF5975-Insertion-4
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975-Insertion-4 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold1723 (1 HSPs) |
| | |
|
| [»] scaffold0325 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 21)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 192 - 819
Target Start/End: Complemental strand, 2875880 - 2875264
Alignment:
| Q |
192 |
agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggc |
291 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2875880 |
agtttatgctgctgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccatcatccactacaatgtgatagggc |
2875781 |
T |
|
| Q |
292 |
acatggtgcacttaagcctatggttcacatggtgaggtaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtgg |
391 |
Q |
| |
|
|| |||| || |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
2875780 |
ac---------ttaatcccatggttcacatgatgaggtaagcattaggataaatctgcata-gcccaacatctaggagtggatgaggggacggaaggtgg |
2875691 |
T |
|
| Q |
392 |
ggctagtgagataataagttagttaacgactccgacgcggatatctgacaaaacaccgacactgacacgtcgacaccgctaatgtnnnnnnnnnncatag |
491 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
2875690 |
ggctagtgagataataagttagttagcgactccgacacggatatctgacaaaacaccaacaaagacacgtcgacaccgctaatgtaaaaaaaaaacatag |
2875591 |
T |
|
| Q |
492 |
ggcaccgatactgccacctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttatttcattnnnnnnnn |
591 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2875590 |
gacaccgacactgccacctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttagttcattaaaaaaag |
2875491 |
T |
|
| Q |
592 |
gatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatca |
691 |
Q |
| |
|
| | ||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2875490 |
gtt-tataacaagatacaatagtatttggcctttatttatccatctactattgaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatca |
2875392 |
T |
|
| Q |
692 |
acattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtctaacatgcctcatactccc |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2875391 |
acattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaaaaaatcagacatttgtttgagttgtctaacatgcctcatactccc |
2875292 |
T |
|
| Q |
792 |
tccgtcccataataagcaagccatttgc |
819 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
2875291 |
tccgtcccataataagcgagccatttgc |
2875264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 192 - 785
Target Start/End: Original strand, 3159489 - 3160073
Alignment:
| Q |
192 |
agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggc |
291 |
Q |
| |
|
|||||||||||||||||| || |||||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3159489 |
agtttatgctgctgaatatgcaagagcttccaagagatttcagaaggtaaccaggtaacattaatatatttcaccatcatccactacaatgtgatagggc |
3159588 |
T |
|
| Q |
292 |
acatggtgcacttaagcctatggttcacatggtgaggtaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtgg |
391 |
Q |
| |
|
|| ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3159589 |
ac---------ttaagcctatggtccacgtggtgagctaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtgg |
3159679 |
T |
|
| Q |
392 |
ggctagtgagataataagttagttaacgactccgacgcggatatctgacaaaacaccgacactgacac------gtcgacaccgctaatgtnnnnnnnnn |
485 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||||| || | |||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
3159680 |
ggctagtgagatgataagttagttagcaactccgacacgaacatctgacacaacaccgacactgacactgacacgttaacaccgctaatgtaaaaaa--- |
3159776 |
T |
|
| Q |
486 |
ncatagggcaccgatactgccacctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttatttcattnn |
585 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3159777 |
-cataggacaccgacactgctacctgtatactaatttatttatgaaagatctaaattgagaatcaaatatgtatctaacttgagcaatttatttcattaa |
3159875 |
T |
|
| Q |
586 |
nnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaactttatagcccttcgt |
685 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3159876 |
aaaaagg-tctataacaagttacaatagtatttggcctttatttatccatctaatatcgaaaaatttaaacacgttgtaatcaactttatagcccttcgt |
3159974 |
T |
|
| Q |
686 |
tgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtctaacatgcctcat |
785 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3159975 |
tgatcaacattttccgcacgtctttaactcttgaatatactatgtgtgtaagcatagaaaa-aaatcagacatttgtttgagttgtctgacatgcctcat |
3160073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 300 - 785
Target Start/End: Complemental strand, 2890134 - 2889651
Alignment:
| Q |
300 |
cacttaagcctatggttcacatggtgaggtaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtggggctagtg |
399 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2890134 |
cacttaagcctatggtccat-tggtgagctaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtagggctagtg |
2890036 |
T |
|
| Q |
400 |
agataataagttagttaacgactccgacgcggatatctgacaaaacaccgacactgacacgtcgacaccgctaatgtnnnnnnnnnncatagggcaccga |
499 |
Q |
| |
|
||||||||||||||||| |||||||||| | || |||||||| | ||||||||||||||||| |||||| ||||||| |||||| |||||| |
|
|
| T |
2890035 |
agataataagttagttagcgactccgacacagacatctgacacagcaccgacactgacacgttgacaccactaatgtaaaaaaaa--cataggacaccga |
2889938 |
T |
|
| Q |
500 |
tactgccacctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttatttcattnnnnnnnngatctata |
599 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
2889937 |
cactgctacttgtatactaatttatttatgaaagatctaaattgagaatcacgtatgtatcttacttgagcaatttatttcattaaaaaaagg-tctata |
2889839 |
T |
|
| Q |
600 |
acaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatcaacattttc |
699 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2889838 |
acaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaactttatagcccttcgttgatcaacattttc |
2889739 |
T |
|
| Q |
700 |
ctcacgtcttcaactcttgaatatactatgtgtggaagcatag--aaaagaaatcagacatttgtttgagttgtctaacatgcctcat |
785 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2889738 |
cgcacgtctttaactcttgaatatactatgtgtggaagcatagaaaaaaaaaatcagacatttgtttgagttgtctgacatgcctcat |
2889651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 192 - 723
Target Start/End: Original strand, 3144908 - 3145420
Alignment:
| Q |
192 |
agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggc |
291 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
3144908 |
agtttatgctgctgaatatgcaagagcttctaaaagatttcagaaggtaaccaggttacattaatatatttcaccatc------tacaatgtgatagggc |
3145001 |
T |
|
| Q |
292 |
acatggtgcacttaagcctatggttcacatggtgaggtaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtgg |
391 |
Q |
| |
|
|| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3145002 |
ac---------ttaagcctatggtccat-tggtgagctaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtag |
3145091 |
T |
|
| Q |
392 |
ggctagtgagataataagttagttaacgactccgacgcggatatctgacaaaacaccgacactgacacgtcgacaccgctaatgtnnnnnnnnnncatag |
491 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||| |||||||| | ||||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
3145092 |
ggctagtgagataataagttagttagcgactccgacacggacatctgacacagcaccgacactgacacgttgacaccactaatgt--aaaaaaaacatag |
3145189 |
T |
|
| Q |
492 |
ggcaccgatactgccacctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttatttcattnnnnnnnn |
591 |
Q |
| |
|
| |||||| ||| | || ||||||||||| |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
3145190 |
gacaccgacactactacttgtatactaatttatttatgaaagatctaaattgagaatcacgcatgtatcttacttgagcaatttatttcattaaaaaaag |
3145289 |
T |
|
| Q |
592 |
gatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaactttatagcccttcgttgatca |
691 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3145290 |
g-tctataacaagatacaatagtatttggcctttatttatccatctactatcgaaaaatttaaaaacgttgtattcaactttatagcccttcgttgatca |
3145388 |
T |
|
| Q |
692 |
acattttcctcacgtcttcaactcttgaatat |
723 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |
|
|
| T |
3145389 |
acattttccgcacgtctttaactcttgaatat |
3145420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 193 - 675
Target Start/End: Original strand, 2795851 - 2796327
Alignment:
| Q |
193 |
gtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactacaatgtgatagggca |
292 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2795851 |
gtttatgctgctgaatatgcaagagcttctaaaagatatcagaaggtaaccatgttacattaatatatttcaccatcatccactacaatgtgatagggca |
2795950 |
T |
|
| Q |
293 |
catggtgcacttaagcctatggttcacatggtgaggtaagcattaggacaaatctgcataagcccaacatctaggagtgcatgaggggaaggaaggtggg |
392 |
Q |
| |
|
| ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
2795951 |
c---------ttaagcctatggtccacgtggtgagctaagcattaggacaaatctgcataagcccaacatctagaactgcatgaggggaaggaaggtggg |
2796041 |
T |
|
| Q |
393 |
gctagtgagataataagttagttaacgactccgacgcggatatctgacaaaacaccgacactgacacgtcgacaccgctaatgt-nnnnnnnnnncatag |
491 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||| |||| |||||||||| ||||| |
|
|
| T |
2796042 |
gctagtgagatagtaagttagttagcgactccgacacggatatctgataaaacaccgacactgatacgccgacgccgctaatgtaataaaaaaaacatag |
2796141 |
T |
|
| Q |
492 |
ggcaccgatactgccacctgtatactaatctatttatgaaagatcttaattgagaatcacatatgtatctaacttgagcaatttatttcatt--nnnnnn |
589 |
Q |
| |
|
| |||| | ||||| || | ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2796142 |
gacacccacactgctacttctatactaatttatttatgaaagatcttaattgagaatcacatatgcatctaacttgagcaatttatttcattaaaaaaaa |
2796241 |
T |
|
| Q |
590 |
nngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaactttat |
675 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
2796242 |
aaggtctataacaagttacaatagtatttggcctttatttatccatctactatcgaaaaatttaaatacgttgtaatcaactttat |
2796327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 2889208 - 2889041
Alignment:
| Q |
8 |
aacttcctttcccgatgaggatagggaaattgttagtttgagggtttcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
2889208 |
aacttcctttcccgatgaggatagggaaattgttagcttgaggttttcttgtaatctgggcaatacatcgtgcttgatggaattgaaagattatgaacgg |
2889109 |
T |
|
| Q |
108 |
gcaaataaatattttaagggatggctgctgtctcccatcttatagaaaatcacatctcttgtttaata |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2889108 |
gcaaataaatattttaaggtatggctgctgtctcccatcttatagaaaatcacatctcttgtttaata |
2889041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 3145654 - 3145821
Alignment:
| Q |
8 |
aacttcctttcccgatgaggatagggaaattgttagtttgagggtttcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacgg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
3145654 |
aacttcctttcccgatgaggatagggaaattgttagcttgaggttttcttgtaatctgggcaatgcatgctgcttgatggaattgaaagattatgaacgg |
3145753 |
T |
|
| Q |
108 |
gcaaataaatattttaagggatggctgctgtctcccatcttatagaaaatcacatctcttgtttaata |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3145754 |
gcaaataaatattttaaggtatggctgctgtctcccatcttatagaaaatcacatctcttgtttaata |
3145821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 3160522 - 3160693
Alignment:
| Q |
9 |
acttcctttcccgatgaggatagggaaattgttagtttgagggtttcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacggg |
108 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | |||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| || |
|
|
| T |
3160522 |
acttcctttcccgatgaggataaggaaattgttgggttgaggtcttcttgtaatctgagcaatgcatcgtgcttgataaaattgaaagattatgaacagg |
3160621 |
T |
|
| Q |
109 |
caaataaatattttaagggatggctgctgtctcccatcttatagaaaatcacatctcttgtttaataataat |
180 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3160622 |
caaataaatattttaaggcatggctgctgtctcccatcttatagaaaatcacatcttttgtttaataataat |
3160693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 2797588 - 2797759
Alignment:
| Q |
9 |
acttcctttcccgatgaggatagggaaattgttagtttgagggtttcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacggg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
2797588 |
acttcctttcccgatgaggatagggaaattgttggcttgaggcattcttgtaatctgggcaatgcatgctgcttgatgaaattgaaagattatgaacggg |
2797687 |
T |
|
| Q |
109 |
caaataaatattttaagggatggctgctgtctcccatcttatagaaaatcacatctcttgtttaataataat |
180 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2797688 |
caaataaatattttaaggtatgtctgctgtctcccatcttatagaaaatcacacctcttgtttaataataat |
2797759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 684 - 819
Target Start/End: Original strand, 2796835 - 2796968
Alignment:
| Q |
684 |
gttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtctaacatgcctc |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
2796835 |
gttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaa-aaatcatacatttgtttgagttgtctgacatgcct- |
2796932 |
T |
|
| Q |
784 |
atactccctccgtcccataataagcaagccatttgc |
819 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
2796933 |
atactccctccgtcccataataagtgagccatttgc |
2796968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 2874533 - 2874381
Alignment:
| Q |
9 |
acttcctttcccgatgaggatagggaaattgttagtttgagggtttcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacggg |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||| |||||||||||||| |||| |||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
2874533 |
acttcctttcccgatgaggataaggaaattgtaggcttgaggttttcttgtaatctgggcaatgcatcgtgcctgatggaattgaaagattatgaacggt |
2874434 |
T |
|
| Q |
109 |
caaataaatattttaagggatggctgctgtctcccatcttatagaaaatcaca |
161 |
Q |
| |
|
||||||||||||| |||| ||| ||| |||||||||||||||||||||||||| |
|
|
| T |
2874433 |
caaataaatatttgaaggtatgtctgttgtctcccatcttatagaaaatcaca |
2874381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 2847580 - 2847503
Alignment:
| Q |
103 |
aacgggcaaataaatattttaagggatggctgctgtctcccatcttatagaaaatcacatctcttgtttaataataat |
180 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2847580 |
aacgggcaaataaatattttaaggcatggctgctgtctcccatcttatagaaaatcacatcttttgtttaataataat |
2847503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 596 - 765
Target Start/End: Complemental strand, 18393659 - 18393483
Alignment:
| Q |
596 |
tataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaactt-------tatagcccttcgttga |
688 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| ||||| |||| |
|
|
| T |
18393659 |
tataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgttgtaatcaactttaatgtctataacccttgattga |
18393560 |
T |
|
| Q |
689 |
tcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttg |
765 |
Q |
| |
|
||||||||| | ||| |||| ||||||||||| || ||| | ||||| || ||||| || ||||||||||||||| |
|
|
| T |
18393559 |
tcaacatttctcgcacatctttaactcttgaatctattatatatggaaacagagaaacaaattcagacatttgtttg |
18393483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 2848821 - 2848722
Alignment:
| Q |
9 |
acttcctttcccgatgaggatagggaaattgttagtttgagggtttcttgtaatctgagcaacacatcgtgcttgatgaaattcaaagattatgaacggg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
2848821 |
acttcctttcccgatgaggatagggaaattgttggcttgaggcattcttgtaatctgggcaatgcatgctgcttgatgaaattgaaagattatgaacggg |
2848722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 204 - 279
Target Start/End: Complemental strand, 39188344 - 39188269
Alignment:
| Q |
204 |
tgaataagccagagcttctaaaagatttcagaaggtaaccaggttacattaatatattttaccatcatccactaca |
279 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||||| |
|
|
| T |
39188344 |
tgaatatgcaagagcttctaaaagatttgagaaggtaaccaagttacattgatatatttcaccctcatccactaca |
39188269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 2890360 - 2890311
Alignment:
| Q |
192 |
agtttatgctgctgaataagccagagcttctaaaagatttcagaaggtaa |
241 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
2890360 |
agtttatgctgctgaatatgcaagagcttctaaaagatttcagaaggtaa |
2890311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 4416038 - 4416111
Alignment:
| Q |
217 |
gcttctaaaagatttcagaaggtaacc-aggttacattaatatattttaccatcatccactacaatgtgatagg |
289 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4416038 |
gcttctaaaagatttatgaaggtaactgaggttacattgatatatttcaccctcatccactacaatgtgatagg |
4416111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 674
Target Start/End: Original strand, 27401840 - 27401955
Alignment:
| Q |
558 |
atctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaaca |
657 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||||||| |||||||| |||||||||||||||||||||||||| | ||| | ||| | |
|
|
| T |
27401840 |
atctaacttgagcaatttatttcattaaaaaaa-gttatataacaagatacaatagaatttggcctttatttatccatctactattgaaagaaaaaaaaa |
27401938 |
T |
|
| Q |
658 |
cgttgtaatcaacttta |
674 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27401939 |
cgttgtaatcaacttta |
27401955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 772
Target Start/End: Original strand, 13097587 - 13097677
Alignment:
| Q |
684 |
gttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatag--aaaagaaatcagacatttgtttgagttgtc |
772 |
Q |
| |
|
|||||||||||||| | ||| |||| ||||||||||| |||| |||||||||||| || |||| |||||| |||||||||||| ||||| |
|
|
| T |
13097587 |
gttgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagcagagacaaaaaaaatcaaacatttgtttgaattgtc |
13097677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 39187874 - 39187822
Alignment:
| Q |
128 |
atggctgctgtctcccatcttatagaaaatcacatctcttgtttaataataat |
180 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
39187874 |
atggctgctgtatctcatcttatagaaaatcaattctcttgtttactaataat |
39187822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 674
Target Start/End: Original strand, 1226113 - 1226187
Alignment:
| Q |
599 |
aacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
|||||| ||| | |||||||| |||||||||| |||||||| |||||| ||||||| | |||||||||||||||| |
|
|
| T |
1226113 |
aacaagataccagagtatttgatctttatttattcatctactatcaaaa-atttaaaaatgttgtaatcaacttta |
1226187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 550 - 674
Target Start/End: Original strand, 17651268 - 17651391
Alignment:
| Q |
550 |
acatatgtatctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaa |
649 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |
|
|
| T |
17651268 |
acatatgcatctaacttgagcaatttatttcattacaagaa-gttctataacaagttacaataatatttggcctttatttatccatctactattgaaaaa |
17651366 |
T |
|
| Q |
650 |
tttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
17651367 |
cttaaatacgttgtaatcaacttta |
17651391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 674
Target Start/End: Complemental strand, 44650072 - 44649997
Alignment:
| Q |
599 |
aacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
|||||| ||| |||| ||||| ||||||||||| |||||||| |||||||| ||||| | |||||||||||||||| |
|
|
| T |
44650072 |
aacaagataccatagaatttgacctttatttattcatctactatcaaaaaagttaaaaatgttgtaatcaacttta |
44649997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 783
Target Start/End: Complemental strand, 18724751 - 18724651
Alignment:
| Q |
682 |
tcgttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtctaacatgcc |
781 |
Q |
| |
|
|||||||||| ||||| | ||| |||| ||||||||||| ||||||||| ||||| | |||||| || ||||| |||||| |||||||||| ||| ||| |
|
|
| T |
18724751 |
tcgttgatcagcatttctcacacatctttaactcttgaatctactatgtgcggaagtagagaaaa-aattcagatatttgtctgagttgtctgacacgcc |
18724653 |
T |
|
| Q |
782 |
tc |
783 |
Q |
| |
|
|| |
|
|
| T |
18724652 |
tc |
18724651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 714 - 786
Target Start/End: Original strand, 41849187 - 41849257
Alignment:
| Q |
714 |
tcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtctaacatgcctcata |
786 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||| || |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41849187 |
tcttgaatctactatgtg--gaagcagagaaaaaaattcagacatttgtttgagttgtccgacacgcctcata |
41849257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 550 - 773
Target Start/End: Complemental strand, 11820681 - 11820453
Alignment:
| Q |
550 |
acatatgtatctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaa |
649 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||| |||| |||||||| ||||| |||||||||| ||||||| | ||||| |
|
|
| T |
11820681 |
acatatgcatctaacttgagcaatttatttcattcaaaaa--gttctatgacaacatacaatagcatttgagctttatttatttatctactattaaaaat |
11820584 |
T |
|
| Q |
650 |
tttaaacacgttgtaatcaacttta-------tagcccttcgttgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatag |
742 |
Q |
| |
|
|||||| | |||||||||| ||||| || |||||||||||||||||||| | ||| |||| ||||||||||| |||| |||||||||||| || |
|
|
| T |
11820583 |
tttaaaaatgttgtaatcatctttaatgtctataacccttcgttgatcaacatttctcacacatctttaactcttgaatctactgtgtgtggaagcagag |
11820484 |
T |
|
| Q |
743 |
aaaagaaatcagacatttgtttgagttgtct |
773 |
Q |
| |
|
|||| |||| ||||||| |||||||||||| |
|
|
| T |
11820483 |
aaaaaaaataagacattattttgagttgtct |
11820453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 611 - 786
Target Start/End: Complemental strand, 9729969 - 9729786
Alignment:
| Q |
611 |
tagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttt-------atagcccttcgttgatcaacattttcctca |
703 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||||||| | | || ||||||||||||||||| | || |
|
|
| T |
9729969 |
tagtatttggactttatttatccacctactatcgaaaaatttaaatgcgttgtaatcaactttaatgtaaaaaacctttcgttgatcaacatttctcaca |
9729870 |
T |
|
| Q |
704 |
cgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatc-agacatttgtttgagttgtctaacatgcctcata |
786 |
Q |
| |
|
| |||| ||||||||||| ||| ||||| ||||| | |||| ||||| ||| |||||||||||||||| ||| |||||||| |
|
|
| T |
9729869 |
catctttaactcttgaatccactccgtgtgaaagcagaaaaaataaatctagatatttgtttgagttgtccgacacgcctcata |
9729786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 596 - 674
Target Start/End: Complemental strand, 11809386 - 11809308
Alignment:
| Q |
596 |
tataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||| | ||||||||||| |||| |
|
|
| T |
11809386 |
tataacaagatacaatagtatttggcctttattacttcatctaccgtcaaaaaatttaaaaaggttgtaatcaaattta |
11809308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 711 - 786
Target Start/End: Complemental strand, 11809264 - 11809189
Alignment:
| Q |
711 |
aactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtctaacatgcctcata |
786 |
Q |
| |
|
||||||||||| |||| ||||| |||||| |||||| || ||| ||||||||||||||||||| ||| ||||||| |
|
|
| T |
11809264 |
aactcttgaatctactgtgtgtagaagcacagaaaaaaattcatacatttgtttgagttgtctgacacacctcata |
11809189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 772
Target Start/End: Complemental strand, 11810926 - 11810840
Alignment:
| Q |
686 |
tgatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtc |
772 |
Q |
| |
|
|||||||||||| | || | ||| ||||||||||| |||| ||||||||| || |||||| || ||||||| |||||||||||||| |
|
|
| T |
11810926 |
tgatcaacatttctcacaaggctttaactcttgaatctactttgtgtggaaacagagaaaaaaattcagacacttgtttgagttgtc |
11810840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 673 - 772
Target Start/End: Complemental strand, 11814423 - 11814323
Alignment:
| Q |
673 |
tatagcccttcgttgatcaacattttcct-cacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgt |
771 |
Q |
| |
|
|||| ||| ||||||||||| ||||| | ||| |||| ||||||||||| || | |||||||||||| |||||| || ||| |||||| |||||||||| |
|
|
| T |
11814423 |
tataacccctcgttgatcaatattttgttacacatctttaactcttgaatctattgtgtgtggaagcagagaaaaaaattcaaacatttctttgagttgt |
11814324 |
T |
|
| Q |
772 |
c |
772 |
Q |
| |
|
| |
|
|
| T |
11814323 |
c |
11814323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 550 - 655
Target Start/End: Original strand, 27993911 - 27994015
Alignment:
| Q |
550 |
acatatgtatctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaa |
649 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| | ||||||||||| |||||||| | ||| |||||||||||||||||| || ||||| |
|
|
| T |
27993911 |
acatatgcatttaacttgagcaatttatttcattaaataaa-gttctataacaagatacaatagcaattgatctttatttatccatctaccatcgaaaaa |
27994009 |
T |
|
| Q |
650 |
tttaaa |
655 |
Q |
| |
|
|||||| |
|
|
| T |
27994010 |
tttaaa |
27994015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 610 - 674
Target Start/End: Complemental strand, 37338857 - 37338793
Alignment:
| Q |
610 |
atagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||| ||||| | ||| | |||||||||| |
|
|
| T |
37338857 |
atagtatttgacctttatttattcatctactatcaaaaaagttaaaaatgttattatcaacttta |
37338793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 706 - 772
Target Start/End: Complemental strand, 11812560 - 11812494
Alignment:
| Q |
706 |
tcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtc |
772 |
Q |
| |
|
|||| ||||||||||| |||| |||||| | || |||||| || |||||||||||||||||||||| |
|
|
| T |
11812560 |
tctttaactcttgaatctactgtgtgtgaacacagagaaaaaaattcagacatttgtttgagttgtc |
11812494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 550 - 786
Target Start/End: Original strand, 16426441 - 16426685
Alignment:
| Q |
550 |
acatatgtatctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaa |
649 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||||||||||| ||||| | | ||||| |
|
|
| T |
16426441 |
acatatgcatctaacttgagcaatttacttcattaaaacaa-gttctataacaaattacaatagtatttggcctttatttatctatctattattgaaaaa |
16426539 |
T |
|
| Q |
650 |
tttaaacacgttgtaatcaactt-------tatagcccttcgttgatcaacattttcctcacgtcttcaa-ctcttgaatatactatgtgtggaagcata |
741 |
Q |
| |
|
|||||| | |||||||||||| |||| | | |||||||||||||||| | ||| |||| || | ||||||| |||||||||| |||||| | |
|
|
| T |
16426540 |
tttaaatgcactgtaatcaactttaatgtctataactcctcgttgatcaacatttctcacacatctttaaccccttgaatctactatgtgtagaagcaaa |
16426639 |
T |
|
| Q |
742 |
gaaaagaaatcag-acatttgtttgagttgtctaacatgcctcata |
786 |
Q |
| |
|
||||| ||||| | | |||||||||||||||| |||| |||||||| |
|
|
| T |
16426640 |
gaaaaaaaatccgtatatttgtttgagttgtccaacacgcctcata |
16426685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 594 - 674
Target Start/End: Original strand, 3387707 - 3387787
Alignment:
| Q |
594 |
tctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||| ||||||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
3387707 |
tctataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgttgtaatcaacttta |
3387787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 594 - 674
Target Start/End: Complemental strand, 48632693 - 48632613
Alignment:
| Q |
594 |
tctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
|||| |||||| ||| |||||||||| ||||||||||| | |||||| |||||||| |||| |||||||||||||||||| |
|
|
| T |
48632693 |
tctaaaacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatcaacttta |
48632613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 550 - 655
Target Start/End: Complemental strand, 50127313 - 50127210
Alignment:
| Q |
550 |
acatatgtatctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaa |
649 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||||||| | |||||||| || ||||| |
|
|
| T |
50127313 |
acatatgcatctaacttgaacaatttatttcattaaataaa-gttctataacaagatacaatagtatttggcctttattt-ttcatctactatcgaaaaa |
50127216 |
T |
|
| Q |
650 |
tttaaa |
655 |
Q |
| |
|
|||||| |
|
|
| T |
50127215 |
tttaaa |
50127210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 558 - 674
Target Start/End: Original strand, 3954967 - 3955082
Alignment:
| Q |
558 |
atctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaaca |
657 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| || ||| ||| || ||||||| |||||||||||||||||||| || ||||| |||| | |
|
|
| T |
3954967 |
atctaacttgagcaatttatttcattaaaaaaa-gttctaaaataagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaa |
3955065 |
T |
|
| Q |
658 |
cgttgtaatcaacttta |
674 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3955066 |
cgttgtaatcaacttta |
3955082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 594 - 745
Target Start/End: Original strand, 209241 - 209399
Alignment:
| Q |
594 |
tctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttt-------atagcccttcgtt |
686 |
Q |
| |
|
|||||||||| ||||| | |||||||||||||||||||||||||| || ||||||||||| |||||||||| |||||| ||| ||| ||||| |
|
|
| T |
209241 |
tctataacaaaatacaacaatatttggcctttatttatccatctacaatcgaaaaatttaaaaacgttgtaataaactttaatgtcgataacccctcgtt |
209340 |
T |
|
| Q |
687 |
gatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaa |
745 |
Q |
| |
|
||||||||||| | || |||| ||||||||||| ||| ||||||| ||||| ||||| |
|
|
| T |
209341 |
gatcaacatttctcacaaatctttaactcttgaatctaccatgtgtgaaagcagagaaa |
209399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1723 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1723
Description:
Target: scaffold1723; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 594 - 772
Target Start/End: Complemental strand, 447 - 263
Alignment:
| Q |
594 |
tctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttt-------atagcccttcgtt |
686 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||| || || |||||| ||| |||||| |||||||||| ||| ||| | ||| |
|
|
| T |
447 |
tctataacaagatacaatagtatttgacctttatttatccatctgctatc-gaaaattgaaatacgttggaatcaactttgatgtccataacccattgtt |
349 |
T |
|
| Q |
687 |
gatcaacattttcctcacgtcttcaactcttgaatatactatgtgtggaagcatagaaaagaaatcagacatttgtttgagttgtc |
772 |
Q |
| |
|
||||||||||| | ||| |||| ||| ||||||| |||| ||||| |||||| | |||| || |||| |||||| ||||||||| |
|
|
| T |
348 |
gatcaacatttctcacacatctttaacccttgaatctactgtgtgtagaagcagaaaaaaaaatccagatatttgtctgagttgtc |
263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 596 - 674
Target Start/End: Original strand, 2602143 - 2602221
Alignment:
| Q |
596 |
tataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| |||| || ||||||||||| |||||||||||||||| |
|
|
| T |
2602143 |
tataacaagatacaatagtatttaccctttatttatccatgtactatcgaaaaatttaaatgtgttgtaatcaacttta |
2602221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 558 - 674
Target Start/End: Complemental strand, 33234998 - 33234886
Alignment:
| Q |
558 |
atctaacttgagcaatttatttcattnnnnnnnngatctataacaagttacaatagtatttggcctttatttatccatctactttcaaaaaatttaaaca |
657 |
Q |
| |
|
|||||||||||||||||||||||||| | | ||||||||| |||||||||||||| || ||||||||||||||||| || ||||||| || | |
|
|
| T |
33234998 |
atctaacttgagcaatttatttcattaaaaaa--gttttataacaagatacaatagtatttgacc-ttatttatccatctactatc-gaaaatttcaaaa |
33234903 |
T |
|
| Q |
658 |
cgttgtaatcaacttta |
674 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33234902 |
tgttgtaatcaacttta |
33234886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 32593896 - 32593953
Alignment:
| Q |
612 |
agtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaa |
669 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
32593896 |
agtatttagcctttatttatccatctactctcaaaaaatttaaatgtgttgtaatcaa |
32593953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 674
Target Start/End: Original strand, 12947 - 13010
Alignment:
| Q |
611 |
tagtatttggcctttatttatccatctactttcaaaaaatttaaacacgttgtaatcaacttta |
674 |
Q |
| |
|
||||||||| | ||||||||| |||||||| |||||||| |||| || ||||||||||||||| |
|
|
| T |
12947 |
tagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatcaacttta |
13010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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