View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-5 (Length: 775)

Name: NF5975-Insertion-5
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-5
NF5975-Insertion-5
[»] chr7 (4 HSPs)
chr7 (8-775)||(40585165-40585932)
chr7 (490-563)||(10542320-10542393)
chr7 (503-565)||(24662426-24662488)
chr7 (490-558)||(1002272-1002340)
[»] chr2 (2 HSPs)
chr2 (488-564)||(35575889-35575965)
chr2 (490-558)||(32885594-32885662)
[»] scaffold0049 (1 HSPs)
scaffold0049 (490-562)||(73265-73337)
[»] chr3 (4 HSPs)
chr3 (498-553)||(49357787-49357841)
chr3 (475-549)||(47928943-47929016)
chr3 (504-581)||(46448252-46448329)
chr3 (490-559)||(946286-946354)
[»] chr8 (2 HSPs)
chr8 (490-557)||(13927686-13927753)
chr8 (490-555)||(6561489-6561554)
[»] chr5 (1 HSPs)
chr5 (490-557)||(12206822-12206889)
[»] chr6 (1 HSPs)
chr6 (533-562)||(7480023-7480052)
[»] chr1 (1 HSPs)
chr1 (490-539)||(31630836-31630885)


Alignment Details
Target: chr7 (Bit Score: 708; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 8 - 775
Target Start/End: Complemental strand, 40585932 - 40585165
Alignment:
Q  8 aagcgttgcatagcttcctccagatgatcgattctcctcacttgaccacttcagcgtgttatggtttggatttatgtttattatacattttattattcat 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40585932 aagcgttgcatagcttcctccagatgattgattctcctcacttgaccacttcagcgttttatggtttggatttatgtttattatacattttattattcat 40585833  T
Q  108 tctaattggcttattgctggcagatccagtgctccagaaatgtcccaaaggaaatcacctgctgcaacccctcgaactgctcgccagttgaagacaccaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585832 tctaattggcttattgctggcagatccagtgctccagaaatgtcccaaaggaaatcacctgctgcaacccctcgaactgctcgccagttgaagacaccaa 40585733  T
Q  208 actctagttctaactcggcctcctcctctccaaatcccataagaaagatgccaaaagacatgagtctgagagtaaacgaacgcaggttatcacacagtcc 307  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40585732 actctggttctaactcggcctcctcctctccaaatcccataagaaagacgccaaaagacatgagtccgagagtaaacgaacgcaggttatcacacagtcc 40585633  T
Q  308 aatatctgaggtatttgaaactactccctctgaactcaattattacaagtaaaaatacatatttttacacttattatgacatttaattatcttgaattca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585632 aatatctgaggtatttgaaactactccctctgaactcaattattacaagtaaaaatacatatttttacacttattatgacatttaattatcttgaattca 40585533  T
Q  408 tgtaatataggaaatacatttaccaatatgcccctcgttataataattatcgcttaccaacttaattaattaatttatgagcatttttggaataataaca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  40585532 tgtaatataggaaatacatttaccaatatgcccctcgttataataattatcgcttaccaacttaattgattaatttatgagtatttttggaataataaca 40585433  T
Q  508 ttaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggcactctttttctaataatgtggatgggttagttagacttgatga 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40585432 ttaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggcactcttttcctaataatgtggatgggttagttagacttgatga 40585333  T
Q  608 tattgatagatgcttattgtttagtggctcttgcattcaaattttcaagttcgtaannnnnnnnccaatggaagttcttaatctactatctgtgttctat 707  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  40585332 tattgatagatgcttatcgtttagtggctcttgcattcaaattttcaagttcgtaattttttttccaatggaagttcttaatctactatctgtgttctat 40585233  T
Q  708 atctacatacaaaatccaaaatatttttgatattcatagttttattttattattcactttataatgtg 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585232 atctacatacaaaatccaaaatatttttgatattcatagttttattttattattcactttataatgtg 40585165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 563
Target Start/End: Original strand, 10542320 - 10542393
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttagg 563  Q
    ||||||||||||||||||||||||||||||| | |  ||||||||| |||||||||||||| ||||||||||||    
T  10542320 atttttggaataataacattaaatgtggatagaatggttgacatttacttatatttgagtctaacaaatttagg 10542393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 503 - 565
Target Start/End: Complemental strand, 24662488 - 24662426
Alignment:
Q  503 taacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggca 565  Q
    ||||||||||||| |||| |||| ||||||||| | |||||||||||||||||||||||||||    
T  24662488 taacattaaatgtagatagattagttgacatttacctatatttgagtccaacaaatttaggca 24662426  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 558
Target Start/End: Original strand, 1002272 - 1002340
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaat 558  Q
    |||||||||| ||| ||||||||| |||||| |||| ||||| |||| |||||||||||||||| ||||    
T  1002272 atttttggaacaattacattaaatatggatagattagttgacttttgtttatatttgagtccaataaat 1002340  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 488 - 564
Target Start/End: Original strand, 35575889 - 35575965
Alignment:
Q  488 gcatttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggc 564  Q
    |||||||||||| |  ||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  35575889 gcatttttggaacacaaacattagatgtggataaattagttgacatttgcttatatttaagtacaacaaattcaggc 35575965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 558
Target Start/End: Complemental strand, 32885662 - 32885594
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaat 558  Q
    |||||| |||||||||||||||||||  | | |||| |||||||||| ||||||| |||||||||||||    
T  32885662 atttttagaataataacattaaatgtaaacagattagttgacatttgtttatattcgagtccaacaaat 32885594  T

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Target: scaffold0049 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 490 - 562
Target Start/End: Complemental strand, 73337 - 73265
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttag 562  Q
    |||||||||||||||  |||||||||| ||| |||| ||| || |||||||||||||| ||||||||||||||    
T  73337 atttttggaataatactattaaatgtgtatagattagttggcaattgcttatatttgaatccaacaaatttag 73265  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 498 - 553
Target Start/End: Complemental strand, 49357841 - 49357787
Alignment:
Q  498 aataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaa 553  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||    
T  49357841 aataataacattaaatgtggataaattagttggcatttgtttata-ttgagtccaa 49357787  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 475 - 549
Target Start/End: Original strand, 47928943 - 47929016
Alignment:
Q  475 aattaatttatgagcatttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagt 549  Q
    |||||||||||| | ||||| |||||||||||||||||| ||||||||| |  | ||||||||||||| ||||||    
T  47928943 aattaatttatgggtatttt-ggaataataacattaaatatggataaatcagctaacatttgcttatagttgagt 47929016  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 581
Target Start/End: Complemental strand, 46448329 - 46448252
Alignment:
Q  504 aacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggcactctttttctaataat 581  Q
    |||||||||||||| ||||||| |||| |||||||||||||| |  |||||||||  ||||||| || | ||||||||    
T  46448329 aacattaaatgtggttaaattaattgaaatttgcttatatttaatcccaacaaatacaggcacttttatgctaataat 46448252  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 559
Target Start/End: Complemental strand, 946354 - 946286
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatt 559  Q
    ||||||| || |||| |||||||| |||||| || | ||||||||||| |||| ||||||||||||||||    
T  946354 atttttgaaacaatagcattaaatatggatagatcaattgacatttgcctata-ttgagtccaacaaatt 946286  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 557
Target Start/End: Original strand, 13927686 - 13927753
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaa 557  Q
    ||||||||||| | ||||||| ||||||||| |||| |||||||| | ||||||| ||||||| ||||    
T  13927686 atttttggaattacaacattagatgtggatatattagttgacattcggttatattcgagtccagcaaa 13927753  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 555
Target Start/End: Original strand, 6561489 - 6561554
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaaca 555  Q
    ||||||||||||||||||||||||| | ||| | || || || ||||||| |||| ||||||||||    
T  6561489 atttttggaataataacattaaatgggcatagaatagttaacttttgcttttattcgagtccaaca 6561554  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 490 - 557
Target Start/End: Original strand, 12206822 - 12206889
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaa 557  Q
    ||||||||||| | ||||||| ||||||||| |||| |||||||| | ||||||| ||||||| ||||    
T  12206822 atttttggaattacaacattagatgtggatatattagttgacattcggttatattcgagtccagcaaa 12206889  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 562
Target Start/End: Complemental strand, 7480052 - 7480023
Alignment:
Q  533 tttgcttatatttgagtccaacaaatttag 562  Q
    ||||||||||||||||||||||||||||||    
T  7480052 tttgcttatatttgagtccaacaaatttag 7480023  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 539
Target Start/End: Original strand, 31630836 - 31630885
Alignment:
Q  490 atttttggaataataacattaaatgtggataaattacttgacatttgctt 539  Q
    |||||||||||||||||||| ||||| |||| |||| || ||||||||||    
T  31630836 atttttggaataataacatttaatgtagatagattagttcacatttgctt 31630885  T

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