View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-6 (Length: 771)

Name: NF5975-Insertion-6
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-6
NF5975-Insertion-6
[»] chr1 (4 HSPs)
chr1 (257-629)||(5354844-5355216)
chr1 (9-237)||(5354588-5354816)
chr1 (662-771)||(5355238-5355348)
chr1 (662-716)||(14244650-14244704)
[»] chr3 (2 HSPs)
chr3 (671-759)||(3267092-3267181)
chr3 (664-740)||(46696645-46696720)
[»] chr2 (3 HSPs)
chr2 (669-759)||(41231293-41231384)
chr2 (664-740)||(40832783-40832858)
chr2 (662-741)||(29483297-29483376)
[»] chr8 (2 HSPs)
chr8 (659-732)||(15889417-15889490)
chr8 (662-732)||(43187774-43187844)
[»] chr7 (4 HSPs)
chr7 (662-757)||(41970637-41970732)
chr7 (662-732)||(38672432-38672502)
chr7 (662-741)||(38364174-38364253)
chr7 (662-740)||(22616321-22616399)
[»] chr4 (2 HSPs)
chr4 (662-737)||(26335553-26335628)
chr4 (659-737)||(45497625-45497703)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 257 - 629
Target Start/End: Original strand, 5354844 - 5355216
Alignment:
Q  257 aatgctaataaatgtttttagaaccttaaggatattcgttaaggaatnnnnnnnntgaagttgtgttgaaaatatattttttagaatggatggataacaa 356  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||        |||||||||||||||||||| ||||||||||||||||||||||||    
T  5354844 aatgctaacaaatgtttttagaaccctaaagatattcgttaaggaataaaaaaaatgaagttgtgttgaaaatattttttttagaatggatggataacaa 5354943  T
Q  357 actcgaaacttcaatccttaaaaccatctaccgtttggtatcgaactaaataatttcaatttggttagtccaagggtcaagcaacttaagttagggtttt 456  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354944 actcgaaacttcaatccttaaaagcatctaccgtttggtatcgaactaaataatttcaatttggttagtccaagggtcaagcaacttaagttagggtttt 5355043  T
Q  457 agaccnnnnnnntccctaaaaatttaattcaataatagatatataacgtaatagattaatcatggatgtttatccaactcaattcttcaacttgagggtt 556  Q
    |||||       |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5355044 agaccaaaaaaatccctaaaaatttaattcaataatagatatataatgtaatagattaatcatggatgtttatccaactcaattcttcaacttgagggct 5355143  T
Q  557 taaatcgttattaaccaggttcgattctaggaattagtaaaacgtaatttttatttaattaattttacaagta 629  Q
    ||||||||| || ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  5355144 taaatcgttcttcaccaggttcgattctaggaattagccaaacgtaatttttatttaattaattttacaagta 5355216  T

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Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 5354588 - 5354816
Alignment:
Q  9 tctactagttttctttcctctttcattacaattgttagacaaattaacgacataaactcggttactcaaatggccatttctcgagcttccgtaccgtcca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5354588 tctactagttttctttcctctttcattacaattgttagacaaattaacgacataaactcggttactcaaatggccatttctcgagcttccgtaccggcca 5354687  T
Q  109 aacaaacactaaagtgccaatagaactagtttagcacacttcatatatataacttacgacttttaatcatgtcccctagaaaaacttttaatcatgtggt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  5354688 aacaaacactaaagtgccaatagaactagtttagcacacttcatatatataacttacaacttttaatcatgtcccctaaaaaaacttttaatcatgtggt 5354787  T
Q  209 caataacatattgggtcatgctaacaaat 237  Q
    | ||  |||||||||||||||||||||||    
T  5354788 ccatggcatattgggtcatgctaacaaat 5354816  T

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Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 662 - 771
Target Start/End: Original strand, 5355238 - 5355348
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaata-gggatagttttgtaaaatcccaacaatccatcttcttctct 760  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  5355238 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaacagggggtagttttgtaaaatcccaacaatccatcttcttctct 5355337  T
Q  761 catcttctctg 771  Q
    |||||||||||    
T  5355338 catcttctctg 5355348  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 716
Target Start/End: Original strand, 14244650 - 14244704
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaa 716  Q
    |||||||| |||||||||||||||||||||| ||||| | ||||| | |||||||    
T  14244650 aaaatattggacacaaatacaacaccatggacagtttggacatttcatccataaa 14244704  T

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Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 671 - 759
Target Start/End: Original strand, 3267092 - 3267181
Alignment:
Q  671 gacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatcccaac-aatccatcttcttctc 759  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| |||||  | |||||| ||||| |||| || |||||||||||||    
T  3267092 gacacaaatacaacaccatggatagtttagacatttcaaccataaattaggggcaattttgtcaaatcacaacaaacccatcttcttctc 3267181  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 740
Target Start/End: Original strand, 46696645 - 46696720
Alignment:
Q  664 aatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatccc 740  Q
    |||||||||||||||||| ||| |||| ||||||| | ||||| | |||||||||||||  ||||||||||| ||||    
T  46696645 aatatttgacacaaatactacaacatgaatagttttgacatttcatccataaaataggg-cagttttgtaaattccc 46696720  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 669 - 759
Target Start/End: Complemental strand, 41231384 - 41231293
Alignment:
Q  669 ttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatcccaaca-atccatcttcttctc 759  Q
    ||||||||||||||||||||||||  |||| | ||||| ||||||||| | |||  ||||||||||||||||| ||  ||||||||||||||    
T  41231384 ttgacacaaatacaacaccatggactgttttgacatttcaaccataaagtgggggcagttttgtaaaatcccatcacctccatcttcttctc 41231293  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 740
Target Start/End: Original strand, 40832783 - 40832858
Alignment:
Q  664 aatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatccc 740  Q
    |||||| ||||||||||||| ||||||| |||||| | ||||| | |||||||||||||  ||||||||||||||||    
T  40832783 aatattggacacaaatacaataccatgggtagttttgacatttcatccataaaataggg-cagttttgtaaaatccc 40832858  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 741
Target Start/End: Original strand, 29483297 - 29483376
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatccca 741  Q
    |||||||||||||||||||| ||||||||| |||||| |  ||||  ||||| ||  |||| ||||||||| ||||||||    
T  29483297 aaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaatccca 29483376  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 659 - 732
Target Start/End: Complemental strand, 15889490 - 15889417
Alignment:
Q  659 cataaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgt 732  Q
    ||||||||||||||||||||| ||||| |||||||||||| | ||||| |  ||||||| ||||| ||||||||    
T  15889490 cataaaatatttgacacaaattcaacatcatggatagtttggacatttcactcataaaacagggacagttttgt 15889417  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 732
Target Start/End: Complemental strand, 43187844 - 43187774
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgt 732  Q
    ||||||||||||||| || ||||| |||||||||||| | ||||| |  ||||||| ||||| ||||||||    
T  43187844 aaaatatttgacacagattcaacatcatggatagtttggacatttcactcataaaacagggacagttttgt 43187774  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 662 - 757
Target Start/End: Complemental strand, 41970732 - 41970637
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatcccaacaatccatcttcttc 757  Q
    |||||||||||||||||||| ||||||||| |||||| |  ||||  ||||| || ||||| ||||||||| ||||||||   | |||||||||||    
T  41970732 aaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagtaggggtagttttgtcaaatcccatagacccatcttcttc 41970637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 662 - 732
Target Start/End: Original strand, 38672432 - 38672502
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgt 732  Q
    |||||||||||||||||| ||||| |||||||||||| | ||||| |  ||||||| ||||| ||||||||    
T  38672432 aaaatatttgacacaaattcaacatcatggatagtttggacatttcactcataaaacagggacagttttgt 38672502  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 741
Target Start/End: Original strand, 38364174 - 38364253
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatccca 741  Q
    |||||||||||||||||||| ||||||||| |||||| |  ||||  ||||| ||  |||| ||||||||| ||||||||    
T  38364174 aaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaatccca 38364253  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 740
Target Start/End: Original strand, 22616321 - 22616399
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaatccc 740  Q
    |||||||||||||||||||| ||||||||| |||||| |  ||||  ||||| ||  |||| ||||||||| |||||||    
T  22616321 aaaatatttgacacaaatacgacaccatgggtagtttggatatttccaccattaagcaggggtagttttgtcaaatccc 22616399  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 662 - 737
Target Start/End: Complemental strand, 26335628 - 26335553
Alignment:
Q  662 aaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaat 737  Q
    ||||||||| ||||||| ||||||||||||| ||||| | ||||| |||||||||||| ||  | |||||||||||    
T  26335628 aaaatatttaacacaaaaacaacaccatggacagttttgtcatttcaaccataaaataagggcaattttgtaaaat 26335553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 659 - 737
Target Start/End: Original strand, 45497625 - 45497703
Alignment:
Q  659 cataaaatatttgacacaaatacaacaccatggatagtttagccattttaaccataaaatagggatagttttgtaaaat 737  Q
    |||||||||||||||||||| |||||| |||||| | ||| | ||||| |||||||||||| ||  | |||||||||||    
T  45497625 cataaaatatttgacacaaaaacaacatcatggacaattttgacatttcaaccataaaataagggcaattttgtaaaat 45497703  T

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