View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975-Insertion-7 (Length: 765)
Name: NF5975-Insertion-7
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 39582856 - 39583427
Alignment:
| Q |
8 |
aatctgaactagaagattgtgcttcttaaacatgcttatatagttatatatggtgtgcgtaaaacgtgagnnnnnnnnnn-gtttgtttaaaactttcaa |
106 |
Q |
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| T |
39582856 |
aatctgaactagaagattgtgcttcttaaacatgcttatatagttatatatggtgtgcgtaaaacgtgagtttttttttttgtttgtttaaaactttcaa |
39582955 |
T |
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| Q |
107 |
aaggtacgcttattgagttatttattgatgtactatttcagctaatttaaaacttaaattagtagactgccacattattaaaatttgcatcaatattcta |
206 |
Q |
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| T |
39582956 |
aaggtacgcttattgagttatttattgatgtactatttcagctaatttaaaacttaaattagtagactgccacaatattaaaatttgcatcaatattcta |
39583055 |
T |
|
| Q |
207 |
ttcattctcattatcagtcagttcagatctgttatgttcaaattttcaactacagacgcacgtcaatagtatatttgcatatgatatgagtgcaagaaag |
306 |
Q |
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| T |
39583056 |
ttcattctcattatcagtcagttcagatctgttatgttcaaattttcaactacagacgcacgtcaatagtatatttgcatatgatatgagtgcaagaaa- |
39583154 |
T |
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| Q |
307 |
nnnnnnnnnnnnnnnnnnnnngtctttatatttacacnnnnnnnngtttcacacatagaacatgttttgttttagtccttctctctgtctccaatgcaaa |
406 |
Q |
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| T |
39583155 |
-aaaaaaaaaaaaaaaaaaaagtctttatatttacacttttttttgtttcacacatagaacatgttttgttttagtccttctctctgcctccaatgcaaa |
39583253 |
T |
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| Q |
407 |
agcacatgttatcattgctggctggcacaagagatgagaatgtcacaccannnnnnnctcaggtcaacacttgccatataagcatttatggtaaatgctg |
506 |
Q |
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| T |
39583254 |
agcacatgttatcattgctggctggcacaagagatgagaatgtcacaccatttttttctcaggtcaacacttgccatataagcatttatggtaaatgctg |
39583353 |
T |
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| Q |
507 |
tgaaaaccaatattttgaaagggaaagaaaaactagagatcagaaatgcttatattgagacttcagaagttcat |
580 |
Q |
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| T |
39583354 |
cgaaaaccaatattttgaaagggaaagaaaaactagagatcagaaatgcttatactgagacttcagaagttcat |
39583427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 648 - 765
Target Start/End: Original strand, 39583495 - 39583612
Alignment:
| Q |
648 |
tagcagaaaagaagtaaaacacgccgcagttgtttccttttctattgatcaggaacttggtttgtccttcaagtactttcagtttcggtatcactatcag |
747 |
Q |
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| T |
39583495 |
tagcagaaaagaagtaaaacacgccgcagttgtttccttttctattgatcaggaacttggtttgtccttcaagtactttcagtttcggtatcactatcag |
39583594 |
T |
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| Q |
748 |
tatccgtatcactatctg |
765 |
Q |
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| T |
39583595 |
tatccgtatcactatctg |
39583612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 673 - 763
Target Start/End: Complemental strand, 39616697 - 39616604
Alignment:
| Q |
673 |
gcagttgtttccttttctattgatca---ggaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtatccgtatcactatc |
763 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
39616697 |
gcagctgtttccttttctattgatcatcaggaacttcatttgtccttccagtactttcagtttccgtatcaatatcagtatctgtatcactatc |
39616604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 673 - 763
Target Start/End: Complemental strand, 39627425 - 39627332
Alignment:
| Q |
673 |
gcagttgtttccttttctattg---atcaggaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtatccgtatcactatc |
763 |
Q |
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|||| ||||||||||||||||| |||| ||||||| |||||||||| ||||||||| ||||| ||||| |||||||||| |||||| |||| |
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| T |
39627425 |
gcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatc |
39627332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 39618427 - 39618359
Alignment:
| Q |
194 |
catcaatattctattcattctcattatcagtcagttcagatctgttatgttcaaattttcaactacaga |
262 |
Q |
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| T |
39618427 |
catcaatattccatgcattctcattatcacgctgttccaatcagttatgttcaaattttcatctacaga |
39618359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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