View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975-Insertion-9 (Length: 573)

Name: NF5975-Insertion-9
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975-Insertion-9
NF5975-Insertion-9
[»] scaffold0444 (1 HSPs)
scaffold0444 (12-573)||(5596-6147)
[»] chr4 (6 HSPs)
chr4 (12-573)||(44440783-44441334)
chr4 (355-461)||(44430732-44430838)
chr4 (80-262)||(44123986-44124174)
chr4 (502-550)||(44430504-44430552)
chr4 (27-77)||(44430849-44430898)
chr4 (145-199)||(52934457-52934511)
[»] chr5 (4 HSPs)
chr5 (78-191)||(4524048-4524162)
chr5 (85-139)||(26188244-26188298)
chr5 (82-145)||(11891997-11892060)
chr5 (358-398)||(28229920-28229960)
[»] chr2 (2 HSPs)
chr2 (78-199)||(43580621-43580739)
chr2 (99-139)||(35984851-35984891)
[»] chr7 (6 HSPs)
chr7 (109-262)||(30588130-30588289)
chr7 (95-263)||(15013611-15013784)
chr7 (358-398)||(9204342-9204382)
chr7 (98-189)||(22886664-22886756)
chr7 (199-254)||(713367-713422)
chr7 (90-154)||(32097599-32097664)
[»] chr3 (5 HSPs)
chr3 (78-137)||(29675549-29675608)
chr3 (146-264)||(46038181-46038302)
chr3 (78-155)||(42314173-42314251)
chr3 (167-261)||(7869863-7869961)
chr3 (198-243)||(14859820-14859865)
[»] chr1 (3 HSPs)
chr1 (86-225)||(35877099-35877241)
chr1 (78-139)||(328306-328367)
chr1 (197-250)||(40344244-40344297)
[»] chr8 (3 HSPs)
chr8 (83-182)||(6890628-6890728)
chr8 (145-199)||(2509095-2509149)
chr8 (202-263)||(12672-12733)
[»] chr6 (2 HSPs)
chr6 (106-188)||(30747624-30747707)
chr6 (358-398)||(31344725-31344765)


Alignment Details
Target: scaffold0444 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 12 - 573
Target Start/End: Complemental strand, 6147 - 5596
Alignment:
Q  12 agctcttgcattccaaaggaactggaatttcaccctcatttttgttggtacagtccattttgtttgctccctctgtcccttaatataagaatactttaca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6147 agctcttgcattccaaaggaactggaatttcaccctcatttttgttggtacagtccattttgtttgcttcctctgtcccttaatataagaatactttaca 6048  T
Q  112 aaaatcacgggtattatgaaaagttgttaaagtataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataaattcaatgttgatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6047 aaaatcacgggtattatgaaaagttgttaaagtataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataaattcaatgttgatt 5948  T
Q  212 attcatatttcaaggcaattggtagtattaataagggtatatttggaaaaaagagtatcttgaaatgtgtagatagtcttatatttagggacatacactt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5947 attcatatttcaaggcaattggtagtattaataagggtatatttggaaaaaagagtatctagaaatgtgtagatagtcttatatttagggacatacactt 5848  T
Q  312 ttttggatgcagtcttataattagggagggagtagagatctacggtatgcattgtcagtgtaaattagctttacactgacatccaatgcgaggcatttat 411  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5847 ttttggatgcagtcttataattagggaggtagtagagattaacggtatgcattgtcagtgtaaattagctttacagtgacatccaatgcgaggcatttat 5748  T
Q  412 tttgcaaccttatacttcatattattagttttaagattaaattagaagactaggctgacgtgacagaacagtggaacagtggatttttattcttatgtga 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||| |||||||||  |||    
T  5747 tttgcaaccttatacttcatattattagttttaagattaaattagaagactaggctgatgtgacagaacag--------tggattcttattctta--tga 5658  T
Q  512 cacatgtgaatagttggttagaaatctcactagggattcgaacctgcaataccttatctttc 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5657 cacatgtgaatagttggttagaaatctcactagggattcgaacctgcaataccttatctttc 5596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 12 - 573
Target Start/End: Complemental strand, 44441334 - 44440783
Alignment:
Q  12 agctcttgcattccaaaggaactggaatttcaccctcatttttgttggtacagtccattttgtttgctccctctgtcccttaatataagaatactttaca 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44441334 agctcttgcattccaaaggaactggaatttcaccctcatttttgttggtacagtccattttgtttgcttcctctgtcccttaatataagaatactttaca 44441235  T
Q  112 aaaatcacgggtattatgaaaagttgttaaagtataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataaattcaatgttgatt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44441234 aaaatcacgggtattatgaaaagttgttaaagtataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataaattcaatgttgatt 44441135  T
Q  212 attcatatttcaaggcaattggtagtattaataagggtatatttggaaaaaagagtatcttgaaatgtgtagatagtcttatatttagggacatacactt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44441134 attcatatttcaaggcaattggtagtattaataagggtatatttggaaaaaagagtatctagaaatgtgtagatagtcttatatttagggacatacactt 44441035  T
Q  312 ttttggatgcagtcttataattagggagggagtagagatctacggtatgcattgtcagtgtaaattagctttacactgacatccaatgcgaggcatttat 411  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44441034 ttttggatgcagtcttataattagggaggtagtagagattaacggtatgcattgtcagtgtaaattagctttacagtgacatccaatgcgaggcatttat 44440935  T
Q  412 tttgcaaccttatacttcatattattagttttaagattaaattagaagactaggctgacgtgacagaacagtggaacagtggatttttattcttatgtga 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||| |||||||||  |||    
T  44440934 tttgcaaccttatacttcatattattagttttaagattaaattagaagactaggctgatgtgacagaacag--------tggattcttattctta--tga 44440845  T
Q  512 cacatgtgaatagttggttagaaatctcactagggattcgaacctgcaataccttatctttc 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44440844 cacatgtgaatagttggttagaaatctcactagggattcgaacctgcaataccttatctttc 44440783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 355 - 461
Target Start/End: Complemental strand, 44430838 - 44430732
Alignment:
Q  355 ggtatgcattgtcagtgtaaattagctttacactgacatccaatgcgaggcatttattttgcaaccttatacttcatattattagttttaagattaaatt 454  Q
    ||||| || |||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  44430838 ggtatacactgtcagtgtaaattagttttacgctgacatccaatgcaagccatttattttgcaaccttatacttcatattattagttttaatattaattt 44430739  T
Q  455 agaagac 461  Q
    |||||||    
T  44430738 agaagac 44430732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 80 - 262
Target Start/End: Complemental strand, 44124174 - 44123986
Alignment:
Q  80 ccctctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaag-tataaatttgtccgaaaagtgtgtaactattacta 178  Q
    |||||||||| ||  ||||||| || |||||||||||||| ||||||| |||||||||||  ||  |||||| |||| ||||| ||| | | ||||||||    
T  44124174 ccctctgtccttttttataagactattttacaaaaatcacaggtattaagaaaagttgttggagcaataaatatgtctgaaaaatgtattattattacta 44124075  T
Q  179 aattagcctttgtgtataa----attcaatgttgattattcatatttcaaggcaattggta-gtattaataagggtatatttggaaaaa 262  Q
    ||||  ||||| |||||||    |||||||||||| | |||||||| |||   |||||||| ||||||||||||||||| |||||||||    
T  44124074 aattgccctttttgtataaatgcattcaatgttgagtgttcatattccaatataattggtaggtattaataagggtatagttggaaaaa 44123986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 550
Target Start/End: Complemental strand, 44430552 - 44430504
Alignment:
Q  502 tcttatgtgacacatgtgaatagttggttagaaatctcactagggattc 550  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  44430552 tcttatgcgacacatgggaatagttggttagaaatctcactagggattc 44430504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 44430898 - 44430849
Alignment:
Q  27 aaggaactggaatttcaccctcatttttgttggtacagtccattttgtttg 77  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  44430898 aaggaactggaatttcacccttatttt-gttggtacagtccattttgtttg 44430849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 52934457 - 52934511
Alignment:
Q  145 ataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataaat 199  Q
    ||||||||||| |||| |||| | ||||||||||||||| ||||||| |||||||    
T  52934457 ataaatttgtctgaaatgtgtatgactattactaaattatcctttgtttataaat 52934511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 4524162 - 4524048
Alignment:
Q  78 ctccctctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaagta-taaatttgtccgaaaagtgtgtaactattac 176  Q
    |||||||||||||||   ||||||| ||| || ||||| ||||||||||| |||||||||||  |||| |||||||||| |||| |||||| ||||||||    
T  4524162 ctccctctgtcccttttaataagaacactctaaaaaaaacacgggtattaagaaaagttgttggagtaataaatttgtctgaaatgtgtgtgactattac 4524063  T
Q  177 taaattagcctttgt 191  Q
    ||||||| |||||||    
T  4524062 taaattatcctttgt 4524048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 26188244 - 26188298
Alignment:
Q  85 tgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgtt 139  Q
    |||||||||||||| || || ||| |||||||||||||||||| |||||||||||    
T  26188244 tgtcccttaatataggagtagtttgcaaaaatcacgggtattacgaaaagttgtt 26188298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 11892060 - 11891997
Alignment:
Q  82 ctctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaagta 145  Q
    ||||||| |||  ||||||| || ||||||||||||||| |||||| ||||||||||| |||||    
T  11892060 ctctgtctctttttataagagtagtttacaaaaatcacgagtattaagaaaagttgttgaagta 11891997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 28229920 - 28229960
Alignment:
Q  358 atgcattgtcagtgtaaattagctttacactgacatccaat 398  Q
    ||||| || ||||||||||||| ||||||||||||||||||    
T  28229920 atgcactgccagtgtaaattagttttacactgacatccaat 28229960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 43580621 - 43580739
Alignment:
Q  78 ctccctctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaagtataaatttgtccgaaaagtgtgtaactattact 177  Q
    |||||||||||||||| |||| ||| || | |||||| |||||||||||| ||||| |||||  |||||||||||||| |||| |||||    | |||||    
T  43580621 ctccctctgtcccttattataggaacacctaacaaaattcacgggtattaagaaaaattgttggagtataaatttgtctgaaatgtgtga---ttttact 43580717  T
Q  178 aaattagcctttgtgtataaat 199  Q
    |||||| ||||| |||||||||    
T  43580718 aaattaccctttatgtataaat 43580739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 35984851 - 35984891
Alignment:
Q  99 agaatactttacaaaaatcacgggtattatgaaaagttgtt 139  Q
    |||| |||||||||||||||||||||||| || ||||||||    
T  35984851 agaacactttacaaaaatcacgggtattaagataagttgtt 35984891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 109 - 262
Target Start/End: Original strand, 30588130 - 30588289
Alignment:
Q  109 acaaaaatcacgggtattatgaaaagttgttaaagt-ataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataa----attcaa 203  Q
    ||||||||||| ||||||| ||||||||||| |||| |||||||| |  ||||  ||||| ||||||||||||||  ||||| || ||||    ||| ||    
T  30588130 acaaaaatcactggtattaagaaaagttgttgaagtaataaatttatttgaaatatgtgttactattactaaattgccctttatgcataaatccatttaa 30588229  T
Q  204 tgttgattattcatatttcaaggcaattggtagtattaataag-ggtatatttggaaaaa 262  Q
    |||||||| |||||||| ||||  ||||| ||||||||||||| |||||| ||| |||||    
T  30588230 tgttgatttttcatattccaagataattgatagtattaataagaggtatagttgaaaaaa 30588289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 15013784 - 15013611
Alignment:
Q  95 tataagaatactttacaaaaatcacgggtattatgaaaagttgttaaag-tataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgt 193  Q
    ||||||| || ||||||||||||||||||||||  ||||||||||  ||  ||||||||||  ||||| | ||| ||||||||||||||  ||||| | |    
T  15013784 tataagagtaatttacaaaaatcacgggtattaaaaaaagttgttggagcaataaatttgtttgaaaa-tatgtgactattactaaattgccctttattt 15013686  T
Q  194 ataaat----tcaatgttgattattcatatttcaaggcaattggtagtattaat-aagggtatatttggaaaaaa 263  Q
    ||||||    |||||||||| | ||||| || |||| |||||| || |||| || ||||||||| ||||||||||    
T  15013685 ataaatgcaatcaatgttgacttttcatgttccaagacaattgataatattcataaagggtatagttggaaaaaa 15013611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 9204382 - 9204342
Alignment:
Q  358 atgcattgtcagtgtaaattagctttacactgacatccaat 398  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  9204382 atgcattgtctgtgtaaattagttttacactgacatccaat 9204342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 22886756 - 22886664
Alignment:
Q  98 aagaatactttacaaaaatcacgggtattatgaaaagttgttaaagta-taaatttgtccgaaaagtgtgtaactattactaaattagccttt 189  Q
    ||||| ||||||||||||||||||||| ||  ||||||  ||  |||| |||||||||| |||| |||||| |||||| |||||||| |||||    
T  22886756 aagaacactttacaaaaatcacgggtactaaaaaaagtctttcgagtaataaatttgtctgaaatgtgtgttactatttctaaattacccttt 22886664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 713422 - 713367
Alignment:
Q  199 ttcaatgttgattattcatatttcaaggcaattggtagtattaataagggtatatt 254  Q
    ||||||||||||| ||| ||||||||| |||||| |||||||||||| | ||||||    
T  713422 ttcaatgttgatttttcttatttcaagacaattgatagtattaataaagatatatt 713367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 32097664 - 32097599
Alignment:
Q  90 cttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaagta-taaatttgt 154  Q
    |||||||||  |||| ||||||||||||||| ||||||  |||| ||||||||||| |||||||||    
T  32097664 cttaatatacaaatagtttacaaaaatcacgagtattaaaaaaaattgttaaagtattaaatttgt 32097599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 29675549 - 29675608
Alignment:
Q  78 ctccctctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttg 137  Q
    ||||||| |||||||  ||||||| |||||||||||||||||| |||||| |||||||||    
T  29675549 ctccctccgtccctttttataagattactttacaaaaatcacgagtattaagaaaagttg 29675608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 46038181 - 46038302
Alignment:
Q  146 taaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataaattcaatgttgattattcatatttcaag---gcaattggtagtattaa 242  Q
    |||||||||  ||||| || || ||||||||||||||| | ||||  || |   |||||||||||| ||||||||  |||   | |||||||||||||||    
T  46038181 taaatttgtttgaaaaatgggttactattactaaattaccttttgattaaatgctcaatgttgatttttcatattcaaagatagtaattggtagtattaa 46038280  T
Q  243 taagggtatatttggaaaaaag 264  Q
    |||||||||| ||| |||||||    
T  46038281 taagggtatagttgaaaaaaag 46038302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 42314251 - 42314173
Alignment:
Q  78 ctccctctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaagt-ataaatttgtc 155  Q
    ||||||| |||||||  ||||||| || ||||||||||||| | |||||| |||||||||||  ||| |||||||||||    
T  42314251 ctccctccgtccctttttataagagtattttacaaaaatcaagagtattaagaaaagttgttggagtaataaatttgtc 42314173  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 7869863 - 7869961
Alignment:
Q  167 taactattactaaattagcctttgtgt----ataaattcaatgttgattattcatatttcaaggcaattggtagtattaataagggtatatttggaaaa 261  Q
    ||||||||||||||||| ||||||| |    ||| |||| ||||||||| ||||||||||||   ||||  | |||||||||| |||||||||| ||||    
T  7869863 taactattactaaattatcctttgtatctaaatacattcgatgttgattcttcatatttcaatataattaattgtattaataaaggtatatttgaaaaa 7869961  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 14859820 - 14859865
Alignment:
Q  198 attcaatgttgattattcatatttcaaggcaattggtagtattaat 243  Q
    |||||||||| |||||||||||| |||| |||||| ||||||||||    
T  14859820 attcaatgttaattattcatattacaagacaattgttagtattaat 14859865  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 225
Target Start/End: Complemental strand, 35877241 - 35877099
Alignment:
Q  86 gtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaagt-ataaatttgtccgaaaagtgtgtaactattactaaattag 184  Q
    |||||||  |||||||| ||||||||||||| || |||||||  |||||||| |  ||| |||||||||||  ||| |||| |||||||||||| ||||     
T  35877241 gtccctttttataagaacactttacaaaaat-acaggtattaataaaagttgctggagtgataaatttgtctaaaatgtgtataactattactagattac 35877143  T
Q  185 cctttgtgtataa----attcaatgttgattattcatatttcaag 225  Q
    ||||||| |||||    |||||||||| ||| |||||||||||||    
T  35877142 cctttgtatataaatacattcaatgtt-atttttcatatttcaag 35877099  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 328306 - 328367
Alignment:
Q  78 ctccctctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgtt 139  Q
    ||||||| |||||||  ||||||| || ||||||||||||| | |||||| |||||||||||    
T  328306 ctccctccgtccctttttataagagtattttacaaaaatcaagagtattaagaaaagttgtt 328367  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 40344297 - 40344244
Alignment:
Q  197 aattcaatgttgattattcatatttcaaggcaattggtagtattaataagggta 250  Q
    ||||||||| | ||| ||||||||| |||  |||||||||||||||||||||||    
T  40344297 aattcaatgataatttttcatattttaagataattggtagtattaataagggta 40344244  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 6890728 - 6890628
Alignment:
Q  83 tctgtcccttaatataagaatactttacaaaaatcacgggtattatgaaaagttgttaaagta-taaatttgtccgaaaagtgtgtaactattactaaat 181  Q
    ||||||||||||||||| | || |||||||||| || || | ||| ||||| |||||  |||| ||||||| |  ||||||||||||||||||| |||||    
T  6890728 tctgtcccttaatataaaagtattttacaaaaaccatggattttaagaaaaattgttggagtaataaatttatgtgaaaagtgtgtaactattattaaat 6890629  T
Q  182 t 182  Q
    |    
T  6890628 t 6890628  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 2509149 - 2509095
Alignment:
Q  145 ataaatttgtccgaaaagtgtgtaactattactaaattagcctttgtgtataaat 199  Q
    |||||||| || |||||||||| |||||||||||||||| | ||| |||||||||    
T  2509149 ataaatttatctgaaaagtgtgaaactattactaaattatcatttatgtataaat 2509095  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 12672 - 12733
Alignment:
Q  202 aatgttgattattcatatttcaaggcaattggtagtattaataagggtatatttggaaaaaa 263  Q
    |||||||||| |||||||| ||||  |||| ||||||||||||||| |||| ||| ||||||    
T  12672 aatgttgatttttcatattccaagataatttgtagtattaataaggatatagttgaaaaaaa 12733  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 30747624 - 30747707
Alignment:
Q  106 tttacaaaaatcacgggtattatgaaaagttgttaaagt-ataaatttgtccgaaaagtgtgtaactattactaaattagcctt 188  Q
    ||||||||||||| | |||||| |||||||||||  ||| ||||| |||||| |||  ||||| ||||||||||||||| ||||    
T  30747624 tttacaaaaatcatgagtattaagaaaagttgttggagtaataaagttgtcccaaatatgtgtgactattactaaattatcctt 30747707  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 31344765 - 31344725
Alignment:
Q  358 atgcattgtcagtgtaaattagctttacactgacatccaat 398  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  31344765 atgcattgtcaatgtaaagtagctttaaactgacatccaat 31344725  T

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