View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_13 (Length: 402)
Name: NF5975_high_13
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 14751874 - 14752250
Alignment:
| Q |
18 |
acaaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgt |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14751874 |
acaaacccttcagtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgt |
14751973 |
T |
|
| Q |
118 |
tgagcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaac |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14751974 |
tgagcatagcgacgaatatgggtggcacaagcggtaggaacgtgactttgaacttttcaatggatgaaagcatgtcatgcatttcgaacttggagagaac |
14752073 |
T |
|
| Q |
218 |
aacgattgttgaacctaaagagagaagcccagcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatat |
317 |
Q |
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| T |
14752074 |
aacgattgttgaacctaaagagagaagcccagcgaacattgctagaccgtatatgtgaaacatgggaattgtgcatatgaatgtatttccccgctcatat |
14752173 |
T |
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| Q |
318 |
tcttcatggttaaacctagcacatacattttgaaccattgctatgaggtttctatgtgaagatactactcctttgct |
394 |
Q |
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| T |
14752174 |
tcttcgtggttaaacctagcacatacaatttgaaccattgctatgaggtttctatgtgaagatactactcctttgct |
14752250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 8534223 - 8534504
Alignment:
| Q |
20 |
aaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttg |
119 |
Q |
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| T |
8534223 |
aaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttc |
8534322 |
T |
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| Q |
120 |
agcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaa |
219 |
Q |
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||||||||||| ||||| || |||||||| |||| ||| || || |||| || ||||| |||||||||||||| ||||| ||||| || |||||||||| |
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| T |
8534323 |
agcatagcaaccaatatcgggggcacaagaggtaagaaggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaa |
8534422 |
T |
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| Q |
220 |
cgattgttgaacctaaagagagaagccc---agcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaa |
298 |
Q |
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| T |
8534423 |
ctatggttgaacccatagcaagaagccccatagcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaa |
8534504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 8599462 - 8599743
Alignment:
| Q |
20 |
aaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttg |
119 |
Q |
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||||||||| || || ||||| || | |||||| ||||| | | |||||||||||| |||||||| || || ||||||||||| ||||| || ||||| |
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| T |
8599462 |
aaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttc |
8599561 |
T |
|
| Q |
120 |
agcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaa |
219 |
Q |
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| T |
8599562 |
agcatagcaaccaatatcgggggcacaagaggtaagaaggttgctctgaatttttcaatcgatgaaagcatgtcgtgcatctcgaatttagagagaacaa |
8599661 |
T |
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| Q |
220 |
cgattgttgaacctaaagagagaagccc---agcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaa |
298 |
Q |
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| T |
8599662 |
ctatggttgaacccatagcaagaagccccatagcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaa |
8599743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 8613964 - 8613683
Alignment:
| Q |
20 |
aaacccttctgtaacctctttgctaagaggagccccaccgcatagcaccgtatgaagggaactcaagtcgtattttctcttaatcgcatcagcattgttg |
119 |
Q |
| |
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||||||||| || || ||||| || | |||||| ||||| | | |||||||||||| |||||||| || || ||||||||||| ||||| || ||||| |
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| T |
8613964 |
aaacccttccgttacttctttactcaaaggagcaccaccagaaaccaccgtatgaagcgaactcaaatcatactttctcttaatagcatctgcgttgttc |
8613865 |
T |
|
| Q |
120 |
agcatagcaacgaatatgggtggcacaagcggtaggaacgtgactttgaacttctcaatggatgaaagcatgtcatgcatttcgaacttggagagaacaa |
219 |
Q |
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| T |
8613864 |
agtatagcaaccaatatcgggggcacaagaggtaagaaggttgctctgaatttttcaatcaatgaaagcatgtcgtgcatctcgaatttagagagaacaa |
8613765 |
T |
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| Q |
220 |
cgattgttgaacctaaagagagaagccc---agcgaacatggctagaccgtatatgtgaaacatgggaattgtgcatatgaa |
298 |
Q |
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| T |
8613764 |
ctatggttgaacccatagcaagaagccccatagcaaacaccgcaagaccgtatatatgaaacatcggaacagtacatatgaa |
8613683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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