View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_14 (Length: 401)
Name: NF5975_high_14
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 13917560 - 13917183
Alignment:
| Q |
18 |
aaacgactcattattctttagatcttaaagattctatcagattgaataatcaaaatgattgatataaatagagttaaggagtactctaactcatatataa |
117 |
Q |
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| T |
13917560 |
aaacgactcattattctttagatcttaaagattctatcagattgaatactcaaaatgattgatataaatagagttaaggagtactctaactca--tataa |
13917463 |
T |
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| Q |
118 |
agcaaaaatgatatagagataatgag---tactctaactcatacataatgcaaagagtatataaacttaattaaagcgaatccaaaagacaacat-aaat |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
13917462 |
agcaaaaatgatatagagataatgagtactactctaactcatacataatgcaaagagtatataaacttaattaaagcgaatccaaaagacaacataaaat |
13917363 |
T |
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| Q |
214 |
aatttgaatgtcaattgggaaaactatagcccttttctctcccttgagagatatcaaaccccatgaaataacttt--tataggtttaaccacgtccttgc |
311 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13917362 |
aatttgaatgtcaattggaaaaactatagcccttttctctcccttgagagatatcaaaccccatgaaataacttttatataggtttaaccacgtccttgc |
13917263 |
T |
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| Q |
312 |
aagtcaccttcttcccttc-aaaatgatctcatttttatggaaccaaattgaccaaacggtagacaatgaatcttcctat |
390 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13917262 |
aagtcaccttcttcccttcaaaaatgatctcatttttatggaaccaaattgaccaaacggtagacaatgaatcttcctat |
13917183 |
T |
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