View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_16 (Length: 375)
Name: NF5975_high_16
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 74 - 358
Target Start/End: Original strand, 54724270 - 54724554
Alignment:
| Q |
74 |
ttttgctcgttgtgcctaacacgatgtgcttgacaatgatgatacgatagaagggaaagttgttacannnnnnngttcatttcattgatttgaaattcaa |
173 |
Q |
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| T |
54724270 |
ttttgctcgttgtgcctaacacgatgtgcttaacaatgatgatacgatagaagggaaagttgttacatttttttgttcatttcattgatttgaaattcaa |
54724369 |
T |
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| Q |
174 |
tatatttggaacaacatcatcatattcctaaccttttgacaacgtacaagacattttagattcatcatatcatgctaaacaatagtaaaataaataaagt |
273 |
Q |
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| T |
54724370 |
tttatttggaacaacatcatcatattcctaactttttgacaacgtacaagacattttagattcatcatatcatgctaaacattagtaaaataaataaaat |
54724469 |
T |
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| Q |
274 |
agacacatgaagtagctatgtgacagaactatctatcacacagccacaattgttatttatctctgattctgaatacaatgcttag |
358 |
Q |
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| T |
54724470 |
agacacatgaagtagctatgtgacagaactatctaccacatagccacaattgttatttatctctgattctgaatacaatgcttag |
54724554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 54724181 - 54724249
Alignment:
| Q |
13 |
aatatatcaagttatattacagaatacacgataatataaaaacacatgttgacgcataatgttttgctc |
81 |
Q |
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| T |
54724181 |
aatatatcaagttatattacagaatacacgataatataaaaacatatgttgacgcataatgttttgctc |
54724249 |
T |
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