View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_17 (Length: 359)
Name: NF5975_high_17
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 43159359 - 43159703
Alignment:
| Q |
7 |
tagattatactttaaaatattttttatacctacaattcgattgcagaccccnnnnnnnngattgaaaattgtctgaggcatccaccaatactcgtaattt |
106 |
Q |
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| T |
43159359 |
tagattatactttaaaatattttttatacctacaattcgattgcagaccccaaaaaaaagattgaaaattgtctgaggcatccaccaatactcgtaattt |
43159458 |
T |
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| Q |
107 |
aagctttcatatcataataatatgnnnnnnnn----atagacaaatgttagtagtaaattttcaccatcggaatccatatcaatgtaacacacttatgag |
202 |
Q |
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| T |
43159459 |
aagctttcatatcataataatatgttttttttttttatagacaaatgttagtagtaaattttcaccgtcggaatccatatcaatgtaacacacttatgag |
43159558 |
T |
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| Q |
203 |
aacatataatgtannnnnnnnnnnnnnnnnnnatgtaaaaactttcatttggaatttcaattataatttatataaaaatgaaagacaaacggagaataaa |
302 |
Q |
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| T |
43159559 |
aacatataatgtatttttttt-----------atgtaaaaactttcatttggaatttcaattataatttatataaaaatgaaagacaaacggagaataaa |
43159647 |
T |
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| Q |
303 |
ctgcacagttaacataaaagaataaataaactccaagcttcctaaccggtcaagcat |
359 |
Q |
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| T |
43159648 |
ctgcactgttaacat-aaagaataaataaactccaagcttcctaaccggtcaagcat |
43159703 |
T |
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