View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_high_21 (Length: 331)

Name: NF5975_high_21
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_high_21
NF5975_high_21
[»] chr8 (16 HSPs)
chr8 (149-316)||(2889041-2889208)
chr8 (149-316)||(3145654-3145821)
chr8 (144-315)||(3160522-3160693)
chr8 (144-315)||(2797588-2797759)
chr8 (31-132)||(2875779-2875880)
chr8 (163-315)||(2874381-2874533)
chr8 (31-131)||(2795851-2795951)
chr8 (31-132)||(3159489-3159590)
chr8 (144-221)||(2847503-2847580)
chr8 (31-132)||(3144908-3145003)
chr8 (216-315)||(2848722-2848821)
chr8 (45-120)||(39188269-39188344)
chr8 (83-132)||(2890311-2890360)
chr8 (35-107)||(4416038-4416111)
chr8 (144-196)||(39187822-39187874)
chr8 (152-188)||(4008181-4008217)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 149 - 316
Target Start/End: Original strand, 2889041 - 2889208
Alignment:
Q  149 tattaaacaagagatgtgattttctataagatgggagacagcagccatcccttaaaatatttatttgcccgttcataatctttgaatttcatcaagcacg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  2889041 tattaaacaagagatgtgattttctataagatgggagacagcagccataccttaaaatatttatttgcccgttcataatctttcaattccatcaagcacg 2889140  T
Q  249 atgtgttgctcagattacaagaaaccctcaaactaacaatttccctatcctcatcgggaaaggaagtt 316  Q
    |||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  2889141 atgtattgcccagattacaagaaaacctcaagctaacaatttccctatcctcatcgggaaaggaagtt 2889208  T

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Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 149 - 316
Target Start/End: Complemental strand, 3145821 - 3145654
Alignment:
Q  149 tattaaacaagagatgtgattttctataagatgggagacagcagccatcccttaaaatatttatttgcccgttcataatctttgaatttcatcaagcacg 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||      
T  3145821 tattaaacaagagatgtgattttctataagatgggagacagcagccataccttaaaatatttatttgcccgttcataatctttcaattccatcaagcagc 3145722  T
Q  249 atgtgttgctcagattacaagaaaccctcaaactaacaatttccctatcctcatcgggaaaggaagtt 316  Q
    |||  |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  3145721 atgcattgcccagattacaagaaaacctcaagctaacaatttccctatcctcatcgggaaaggaagtt 3145654  T

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Target: chr8; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 3160693 - 3160522
Alignment:
Q  144 attattattaaacaagagatgtgattttctataagatgggagacagcagccatcccttaaaatatttatttgcccgttcataatctttgaatttcatcaa 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||    
T  3160693 attattattaaacaaaagatgtgattttctataagatgggagacagcagccatgccttaaaatatttatttgcctgttcataatctttcaattttatcaa 3160594  T
Q  244 gcacgatgtgttgctcagattacaagaaaccctcaaactaacaatttccctatcctcatcgggaaaggaagt 315  Q
    ||||||||  ||||||||||||||||||  |||||| | |||||||||| ||||||||||||||||||||||    
T  3160593 gcacgatgcattgctcagattacaagaagacctcaacccaacaatttccttatcctcatcgggaaaggaagt 3160522  T

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Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 2797759 - 2797588
Alignment:
Q  144 attattattaaacaagagatgtgattttctataagatgggagacagcagccatcccttaaaatatttatttgcccgttcataatctttgaatttcatcaa 243  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  2797759 attattattaaacaagaggtgtgattttctataagatgggagacagcagacataccttaaaatatttatttgcccgttcataatctttcaatttcatcaa 2797660  T
Q  244 gcacgatgtgttgctcagattacaagaaaccctcaaactaacaatttccctatcctcatcgggaaaggaagt 315  Q
    |||  |||  |||| |||||||||||||  |||||| | |||||||||||||||||||||||||||||||||    
T  2797659 gcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagt 2797588  T

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Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 2875779 - 2875880
Alignment:
Q  31 gtgccctatcacattgtagtggatgatggtaaaatatattaatgtaacctggttaccttctgaaatcttttagaagctctggcttattcagcagcataaa 130  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  2875779 gtgccctatcacattgtagtggatgatggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattcagcagcataaa 2875878  T
Q  131 ct 132  Q
    ||    
T  2875879 ct 2875880  T

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Target: chr8; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 2874381 - 2874533
Alignment:
Q  163 tgtgattttctataagatgggagacagcagccatcccttaaaatatttatttgcccgttcataatctttgaatttcatcaagcacgatgtgttgctcaga 262  Q
    |||||||||||||||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||| |||| ||||| ||||||||  |||| ||||    
T  2874381 tgtgattttctataagatgggagacaacagacataccttcaaatatttatttgaccgttcataatctttcaattccatcaggcacgatgcattgcccaga 2874480  T
Q  263 ttacaagaaaccctcaaactaacaatttccctatcctcatcgggaaaggaagt 315  Q
    |||||||||| |||||| |  ||||||||| ||||||||||||||||||||||    
T  2874481 ttacaagaaaacctcaagcctacaatttccttatcctcatcgggaaaggaagt 2874533  T

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Target: chr8; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 2795951 - 2795851
Alignment:
Q  31 gtgccctatcacattgtagtggatgatggtaaaatatattaatgtaacctggttaccttctgaaatcttttagaagctctggcttattcagcagcataaa 130  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||    
T  2795951 gtgccctatcacattgtagtggatgatggtgaaatatattaatgtaacatggttaccttctgatatcttttagaagctcttgcatattcagcagcataaa 2795852  T
Q  131 c 131  Q
    |    
T  2795851 c 2795851  T

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Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 3159590 - 3159489
Alignment:
Q  31 gtgccctatcacattgtagtggatgatggtaaaatatattaatgtaacctggttaccttctgaaatcttttagaagctctggcttattcagcagcataaa 130  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| || |||||||| || ||||||||||||||||    
T  3159590 gtgccctatcacattgtagtggatgatggtgaaatatattaatgttacctggttaccttctgaaatctcttggaagctcttgcatattcagcagcataaa 3159491  T
Q  131 ct 132  Q
    ||    
T  3159490 ct 3159489  T

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Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 2847503 - 2847580
Alignment:
Q  144 attattattaaacaagagatgtgattttctataagatgggagacagcagccatcccttaaaatatttatttgcccgtt 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2847503 attattattaaacaaaagatgtgattttctataagatgggagacagcagccatgccttaaaatatttatttgcccgtt 2847580  T

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Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 3145003 - 3144908
Alignment:
Q  31 gtgccctatcacattgtagtggatgatggtaaaatatattaatgtaacctggttaccttctgaaatcttttagaagctctggcttattcagcagcataaa 130  Q
    |||||||||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  3145003 gtgccctatcacattgtag------atggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattcagcagcataaa 3144910  T

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Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 2848722 - 2848821
Alignment:
Q  216 cccgttcataatctttgaatttcatcaagcacgatgtgttgctcagattacaagaaaccctcaaactaacaatttccctatcctcatcgggaaaggaagt 315  Q
    |||||||||||||||| ||||||||||||||  |||  |||| |||||||||||||  |||||| | |||||||||||||||||||||||||||||||||    
T  2848722 cccgttcataatctttcaatttcatcaagcagcatgcattgcccagattacaagaatgcctcaagccaacaatttccctatcctcatcgggaaaggaagt 2848821  T

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Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 39188269 - 39188344
Alignment:
Q  45 tgtagtggatgatggtaaaatatattaatgtaacctggttaccttctgaaatcttttagaagctctggcttattca 120  Q
    |||||||||||| ||| |||||||| |||||||| |||||||||||| |||||||||||||||||| || ||||||    
T  39188269 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 39188344  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 2890311 - 2890360
Alignment:
Q  83 ttaccttctgaaatcttttagaagctctggcttattcagcagcataaact 132  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  2890311 ttaccttctgaaatcttttagaagctcttgcatattcagcagcataaact 2890360  T

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Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 4416111 - 4416038
Alignment:
Q  35 cctatcacattgtagtggatgatggtaaaatatattaatgtaacct-ggttaccttctgaaatcttttagaagc 107  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||||  |||||||||  |||||||||||||||    
T  4416111 cctatcacattgtagtggatgagggtgaaatatatcaatgtaacctcagttaccttcataaatcttttagaagc 4416038  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 39187822 - 39187874
Alignment:
Q  144 attattattaaacaagagatgtgattttctataagatgggagacagcagccat 196  Q
    ||||||| |||||||||||  ||||||||||||||||| || |||||||||||    
T  39187822 attattagtaaacaagagaattgattttctataagatgagatacagcagccat 39187874  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 4008217 - 4008181
Alignment:
Q  152 taaacaagagatgtgattttctataagatgggagaca 188  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  4008217 taaacaagagaagtggttttctataagatgggagaca 4008181  T

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