View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_25 (Length: 307)
Name: NF5975_high_25
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 6611661 - 6611386
Alignment:
| Q |
12 |
atccaaaaatagagggtatgtaagcattctttattttcctctaaaagaaaagttctttatttttctctaacctaatctttaatttctcatgtgcagaacg |
111 |
Q |
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| T |
6611661 |
atccaaaaatagagggtatgtaagcattctttattttcctctgaaagaaaagttctttatttttctctaacctaatctttaatttctcatgtgcagaacg |
6611562 |
T |
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| Q |
112 |
tgggatatattgagattcaatttaattaaagggacacccatacatataaaccccactattcttaattggagtccaagtaagaaatcaaagatcaagatag |
211 |
Q |
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| T |
6611561 |
tgggatatattgagattcaatttaattaaagggacactcatacatataaaccccactattcttcattggagtccaagtaggaaatcaaagatcaagatag |
6611462 |
T |
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| Q |
212 |
attactttcagtggttttgagtattatgcctttagtttatatcatattgtccatttggaacattagatttgggtag |
287 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6611461 |
attactttcagtggctttgagtattatgcctttagtttatatcatattgtccatttggaacattagattagggtag |
6611386 |
T |
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