View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_39 (Length: 253)
Name: NF5975_high_39
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 39026849 - 39027003
Alignment:
| Q |
12 |
atactgatccatctatatctggagtaataaatagtaatagtaaggacttggagggaaatcagaatattacatctacatctgatactgcaaatgatgaagg |
111 |
Q |
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| T |
39026849 |
atactgatccatctatatctggagtaataaatggtaatggtaaggacttggagggaaatcagaattctacatctacatctgatactgcaaatgatgaagg |
39026948 |
T |
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| Q |
112 |
ttttgctcatttgaatgcaggaaacaagaaaaacctagaaaaggtattattgcat |
166 |
Q |
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| T |
39026949 |
ttctgctcatttgaatgcagtaaacaagaaaaatctagaaaaggtattattgcat |
39027003 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 39031589 - 39031669
Alignment:
| Q |
80 |
acatctacatctgatactgcaaatgatgaaggttttgctcatttgaatgcaggaaacaagaaaaacctagaaaaggtatta |
160 |
Q |
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| T |
39031589 |
acatctacatctaatactgaaaatgacgaaaattctgctcatttcaatgcagtaaacaagaaaaatctagaaaaggtatta |
39031669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 18184998 - 18185086
Alignment:
| Q |
165 |
atgctattctcttatagcattttcattctgtttttgtttttatttatctagcataatatgtatcatgcataatgttttaattgtttgat |
253 |
Q |
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| T |
18184998 |
atgctattttcttatagcattttcattctgtttttgtttttatttatctagcataatatgtatcatgcataatgttttaattgtttgat |
18185086 |
T |
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