View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_high_4 (Length: 608)

Name: NF5975_high_4
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_high_4
NF5975_high_4
[»] chr4 (1 HSPs)
chr4 (10-590)||(2345061-2345641)
[»] chr8 (5 HSPs)
chr8 (138-589)||(7321812-7322269)
chr8 (138-572)||(7319492-7319929)
chr8 (135-575)||(7318179-7318628)
chr8 (135-241)||(7324576-7324682)
chr8 (303-382)||(7324750-7324829)
[»] chr2 (4 HSPs)
chr2 (302-574)||(6521468-6521743)
chr2 (467-591)||(19623505-19623629)
chr2 (411-560)||(19143987-19144136)
chr2 (171-199)||(6521346-6521374)
[»] scaffold0208 (1 HSPs)
scaffold0208 (475-574)||(15648-15747)
[»] chr7 (1 HSPs)
chr7 (486-574)||(10570305-10570393)
[»] chr3 (2 HSPs)
chr3 (302-574)||(32984365-32984640)
chr3 (167-251)||(32984239-32984314)
[»] chr5 (1 HSPs)
chr5 (475-526)||(25191498-25191548)


Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 10 - 590
Target Start/End: Complemental strand, 2345641 - 2345061
Alignment:
Q  10 aagaaaatcattataaatagcaaggcaattgcactttcccttatcccatatccaatttgtaaagatcagaatgattcacactattcttttcttttttgtt 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2345641 aagaatatcattataaatagcaaggcaattgcactttcccttatcccatatccaatttgtaaaaatcagaatgattcacactattcttttcttttttgtt 2345542  T
Q  110 cttctctcatcatatacctcttatgctgatgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2345541 cttctctcatcatatacctcttatgctgatgatttatgtgtagcagacttactactcccaaacaccccttcaggctatccatgcaaatcagaaacaaatg 2345442  T
Q  210 taacagtgaatgattttgtgttctctggcttagtacctggaagcacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccagg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2345441 taacagtgaatgattttgtgttctctggcttagtacctggaagcacaataaacccttttaattttgcaataacatctgcatttgtcactagtttaccagg 2345342  T
Q  310 tcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcatgatgcaactgaattacttatcgttgtc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345341 tcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcatgatgcaactgaattacttatcgttgtc 2345242  T
Q  410 gaaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcatt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345241 gaaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcatt 2345142  T
Q  510 ttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaatacttgata 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2345141 ttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaatacttgata 2345061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 3e-93; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 138 - 589
Target Start/End: Original strand, 7321812 - 7322269
Alignment:
Q  138 atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg 237  Q
    ||||||| ||||| ||||| ||||  || |||||||| |||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||    
T  7321812 atgatttctgtgtggcagatttacagcttccaaacactccttcaggctatccatgcaagtcagaaacaaatgtaacagcagatgattttgtgttctctgg 7321911  T
Q  238 cttagtacctggaagcacaa---taaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgca 334  Q
    ||| ||||| ||||||||||   || ||||||||||| || || ||||| |||| ||||| ||||||||||||||||||||| |||||||| ||||||||    
T  7321912 ctttgtacccggaagcacaatattagacccttttaatgttacattaaccactgcttttgttactagtttaccaggtcttaatcgacttggtttctctgca 7322011  T
Q  335 gcaagagcagattttggtataaatggaagtgttccagtgcacactca---tgatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggat 431  Q
    ||||  | ||| |||||||||||||||| ||||||| |||||  |||   |||||| |||||||| |||||| | || ||| | ||| | ||||| ||||    
T  7322012 gcaaagggagactttggtataaatggaactgttccaatgcactttcatcctgatgcgactgaattgcttatcatagttgaaagccaattaactgctggat 7322111  T
Q  432 ttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttgg 531  Q
    ||||||| |   | |||||||||| ||||| | |||||| ||||||| || ||||||||||||||||||| ||||||||| |||| ||| ||||||||||    
T  7322112 ttattacaccggcaaaagtttatttgaaaattgttaaacatggtgatattgtagtttttccaaaaggacttttgcattttttagttaacactggtgttgg 7322211  T
Q  532 aaaagctgttgcttttgttgcttttagtagctcaaatcctagcacacaaatacttgat 589  Q
    ||||||||||  ||||| |||||| |||||| ||||||| | ||  ||||||||||||    
T  7322212 aaaagctgttatttttgctgctttaagtagcacaaatcccaccatgcaaatacttgat 7322269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 138 - 572
Target Start/End: Original strand, 7319492 - 7319929
Alignment:
Q  138 atgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctgg 237  Q
    ||||||| ||||| ||||||||||  || ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||| |     
T  7319492 atgatttctgtgttgcagacttacagcttccaaataccccttcaggctatccatgcaagtcagaaacaaatgtaacagtggatgattttttattctccga 7319591  T
Q  238 cttagtacctggaagcacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatctctgcagca 337  Q
    ||| |||||| ||| ||||||| ||||||||||| ||  | ||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  7319592 ctttgtacctagaaacacaatagacccttttaatgttagattaaccactgcattcgtcactagtttaccaggtcttaatggacttggtatctccgcagca 7319691  T
Q  338 agagcagattttggtataaatggaagtgttccagtgcacactca---tgatgcaactgaattacttatcgttgtcgaaggtcaaattactgccggattta 434  Q
    || |  || |||||  ||||||||| ||||||| ||||   |||   |||||||| |||||| |||||||| ||  |||| ||  | ||||| |||||||    
T  7319692 aggggggactttggcttaaatggaactgttccaatgcattttcatcctgatgcaaatgaattgcttatcgtagttaaaggccagttaactgctggattta 7319791  T
Q  435 ttacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaa 534  Q
    |||| | ||| |||||| ||| ||||||| ||||||||||||||  | ||||| ||||||||||||| || ||||||| ||| ||| ||| |||||||||    
T  7319792 ttacaccaacaaaagttgatttgaaaactgttaaacctggtgatagtttagttattccaaaaggacttttacattttggagttaacactgatgttggaaa 7319891  T
Q  535 agctgttgcttttgttgcttttagtagctcaaatccta 572  Q
     ||| |||||| || |  ||| ||||||||||| ||||    
T  7319892 tgctattgcttctgcttttttcagtagctcaaacccta 7319929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 135 - 575
Target Start/End: Complemental strand, 7318628 - 7318179
Alignment:
Q  135 ctgatgatttatgtgtagcagacttactact---accaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgtt 231  Q
    |||||||||| ||||||||| ||||| | ||   | || ||||||||||||||||||||||||||||||||| |  |||||||| | |||||||  |||     
T  7318628 ctgatgatttctgtgtagcaaacttatttcttacatcagacaccccttcaggctatccatgcaaatcagaaaaatttgtaacagcggatgatttcatgta 7318529  T
Q  232 ctctggcttagtacctg---gaagcacaataaacccttttaattttgcaataacctctgcatttgtcactagtttaccaggtcttaatggacttggtatc 328  Q
    |||| |||||| | |||   ||| ||||  ||||||||||||  ||| | ||||||| | |  ||||| || |||| ||||||| ||||||| |    |     
T  7318528 ctctagcttagcagctgctggaaacacagcaaacccttttaaagttggattaacctcggtaaatgtcagtaatttagcaggtctcaatggacataagtta 7318429  T
Q  329 tctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactca---tgatgcaactgaattacttatcgttgtcgaaggtcaaattactg 425  Q
    ||||||||||||  |||| ||||||||||||||||||| ||| ||||||||||   |||||||||||||||||| |||||| |  |||||||||||||||    
T  7318428 tctgcagcaagaatagatattggtataaatggaagtgtaccaatgcacactcatcctgatgcaactgaattactaatcgttattcaaggtcaaattactg 7318329  T
Q  426 ccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctgg 525  Q
      ||||| || || |  || ||| |||    ||||| | |||| ||||||||| ||   |||||||||| ||||||||||||||||  | | ||||||||    
T  7318328 ttggattcatcacacctacaaaacttttggtgaaaattcttaatcctggtgatgtttgggtttttccaataggactattgcattttcaatttaactctgg 7318229  T
Q  526 tgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagca 575  Q
    || |||||| ||| |||||| || |||||||||||||||||| |||||||    
T  7318228 tgatggaaatgctattgcttatgctgcttttagtagctcaaaccctagca 7318179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 7324576 - 7324682
Alignment:
Q  135 ctgatgatttatgtgtagcagacttactactaccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctc 234  Q
    |||||||||| |||||||||||||||    | ||| |||||||||| |||||||||||||| || ||||  ||||||||||   |||||||||| |||||    
T  7324576 ctgatgatttctgtgtagcagacttatcgtttccagacaccccttcgggctatccatgcaagtcggaaaacaatgtaacagctgatgattttgtattctc 7324675  T
Q  235 tggctta 241  Q
    |||||||    
T  7324676 tggctta 7324682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 7324750 - 7324829
Alignment:
Q  303 taccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcat 382  Q
    |||||||||| ||||||||||||||||||| |||||||  |||| ||||  | ||||||||||| ||| |||||||||||    
T  7324750 taccaggtctcaatggacttggtatctctgtagcaagaatagatcttggcttcaatggaagtgtaccaatgcacactcat 7324829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 302 - 574
Target Start/End: Original strand, 6521468 - 6521743
Alignment:
Q  302 ttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcat---gatgcaactgaattac 398  Q
    |||||| |||| |||||||||| ||| ||||||||||||| |||  |||||  |||||||  ||||||| |||| ||||||   ||||||||||||||||    
T  6521468 ttaccaagtctcaatggacttgatatatctgcagcaagagtagacattggtccaaatggatctgttccaatgcatactcatcctgatgcaactgaattac 6521567  T
Q  399 ttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaagg 498  Q
    | ||| | ||  |||||  | | ||||| |||||||| |  |  ||  ||||||||   |||  | |||| |||  |||| |||| ||||||||||||||    
T  6521568 taatcatggttcaaggtagagtcactgctggatttatcaaccttacagaagtttatgtcaaagatcttaagcctactgatattatggtttttccaaaagg 6521667  T
Q  499 actattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagc 574  Q
    |||||||||||||||||| |||||||||| |||| ||||| ||||||||| | ||| |||||||||||| ||||||    
T  6521668 actattgcattttgtagttaactctggtgctggagaagctattgcttttgctacttatagtagctcaaagcctagc 6521743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 467 - 591
Target Start/End: Complemental strand, 19623629 - 19623505
Alignment:
Q  467 aaacctggtgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaa 566  Q
    ||||| |||||| |||| ||||||||| ||||| | |||||||||| ||| || ||||||   |||||||||  |||||||| ||||||||||||   ||    
T  19623629 aaaccaggtgatattattgtttttccacaaggaatgttgcattttgcagttaattctggtaagggaaaagctactgcttttggtgcttttagtagtgaaa 19623530  T
Q  567 atcctagcacacaaatacttgatat 591  Q
    ||||||  || ||||||||||||||    
T  19623529 atcctactactcaaatacttgatat 19623505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 560
Target Start/End: Complemental strand, 19144136 - 19143987
Alignment:
Q  411 aaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaaggactattgcattt 510  Q
    ||||| |||||||||| |||||| | ||||  |||| | ||||||| || ||  | ||||| |||||| || | ||||||||||||||  | ||||||||    
T  19144136 aaggtgaaattactgctggatttttgacgcctactacattttattctaagacgttgaaaccgggtgatatttttgtttttccaaaagggatgttgcattt 19144037  T
Q  511 tgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagta 560  Q
    || ||| || ||||||   |||||||||  |||||||| |||| ||||||    
T  19144036 tgcagttaattctggtaagggaaaagctactgcttttggtgctcttagta 19143987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 6521346 - 6521374
Alignment:
Q  171 acaccccttcaggctatccatgcaaatca 199  Q
    |||||||||||||||||||||||||||||    
T  6521346 acaccccttcaggctatccatgcaaatca 6521374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 475 - 574
Target Start/End: Original strand, 15648 - 15747
Alignment:
Q  475 tgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagc 574  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||||| | ||| |||||||||||| ||||||    
T  15648 tgatattatggtttttccaaaaggactattgcattttgtagttaactctcgtgctggagaagctattgcttttgctacttatagtagctcaaagcctagc 15747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 574
Target Start/End: Complemental strand, 10570393 - 10570305
Alignment:
Q  486 tttttccaaaaggactattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagc 574  Q
    ||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| ||||||||| | ||| |||||||||||| ||||||    
T  10570393 tttttccaaaaggactattgcattttgtagttaactcttgtgctggagaagctattgcttttgctacttatagtagctcaaagcctagc 10570305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 574
Target Start/End: Original strand, 32984365 - 32984640
Alignment:
Q  302 ttaccaggtcttaatggacttggtatctctgcagcaagagcagattttggtataaatggaagtgttccagtgcacactcat---gatgcaactgaattac 398  Q
    |||||| |||| |||||||| | | ||||||| ||||||| |||| ||||| ||||||||  ||||||  |||| ||||||   ||||||||||||||||    
T  32984365 ttaccaagtctcaatggactcgatgtctctgcggcaagagtagatattggtgtaaatggatctgttccgatgcatactcatcccgatgcaactgaattac 32984464  T
Q  399 ttatcgttgtcgaaggtcaaattactgccggatttattacgcgaactaaagtttattcgaaaactattaaacctggtgatcttatagtttttccaaaagg 498  Q
    | ||| | ||  ||||| || |||| || ||||||||||  |  ||  |||||| |   |||  | || | | ||||||| |||| |||||||| || ||    
T  32984465 taatcatggttcaaggtaaagttacagctggatttattaaccttacagaagtttttgtcaaagatcttcagcttggtgatattatggtttttcctaaggg 32984564  T
Q  499 actattgcattttgtagtgaactctggtgttggaaaagctgttgcttttgttgcttttagtagctcaaatcctagc 574  Q
    |||| |||||||||| || ||||| |||| || | ||||| ||||||||| | ||| |||||||||||| ||||||    
T  32984565 actaatgcattttgttgttaactccggtgctgaagaagctattgcttttgctacttatagtagctcaaagcctagc 32984640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 32984239 - 32984314
Alignment:
Q  167 ccaaacaccccttcaggctatccatgcaaatcagaaacaaatgtaacagtgaatgattttgtgttctctggcttagtacctggaa 251  Q
    ||| |||||||||||||||||||||||||||||           ||||||| |||||||||||||||||||||| ||||||||||    
T  32984239 ccagacaccccttcaggctatccatgcaaatca---------ccaacagtggatgattttgtgttctctggctttgtacctggaa 32984314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 526
Target Start/End: Original strand, 25191498 - 25191548
Alignment:
Q  475 tgatcttatagtttttccaaaaggactattgcattttgtagtgaactctggt 526  Q
    |||| |||| ||||||||||||| |||||||||||||||||| |||||||||    
T  25191498 tgatattatggtttttccaaaag-actattgcattttgtagttaactctggt 25191548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University