View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_40 (Length: 253)
Name: NF5975_high_40
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_40 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 20754013 - 20753784
Alignment:
| Q |
19 |
tgtcccaccaccgttatacaagaaaacagtttacacaacaaatcataatggattggtggcaatatctgaagagtctctttgcaccactatctcattctag |
118 |
Q |
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| T |
20754013 |
tgtcccaccaccgttatacaagaaaacagtttacacaacaaatcataatggattggtggcaatatctgaagagtctctttgcaccactatctcatactag |
20753914 |
T |
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| Q |
119 |
ccaccaatcaaagttcttctttccacacatatcttttacacttgtccaattttttcatttataaatatcttcccaaagcctccacaacctccacacacac |
218 |
Q |
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| T |
20753913 |
ccaccaatcaaagttcttctttccacacatatcttttacaattgtccaattttttcatatataaatatcttatcaaagccttcataacatccacacac-- |
20753816 |
T |
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| Q |
219 |
tataaagaaaaaccaaattccaaaatggatatttc |
253 |
Q |
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| T |
20753815 |
---aaagaaaaaacaaattccaaaatggatatttc |
20753784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 20759708 - 20759505
Alignment:
| Q |
19 |
tgtcccaccaccgttataca--agaaaacagtttacacaacaaatcataatggattggtggcaatatctgaagagtctctttgcaccactatctcattct |
116 |
Q |
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|||||||||||||||||| | |||||||| |||| | ||||||||||||||| ||||||||||||| ||||||||||| ||||||||||| || |
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| T |
20759708 |
tgtcccaccaccgttatatataagaaaacacaaaacactataaatcataatggattattggcaatatctgactagtctctttgctccactatctcaaact |
20759609 |
T |
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| Q |
117 |
agccac----caatcaaagttcttctttccacacatatcttttacacttgtcca-attttttcatttataaatatcttcccaaagcctccacaacctcca |
211 |
Q |
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| T |
20759608 |
cacaaagctgcaatcaaatttcttgtttccacacatatcttttacacttgtccacattttttcatctataaatatcttacc-aagccttctaaacctcca |
20759510 |
T |
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| Q |
212 |
cacac |
216 |
Q |
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||||| |
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| T |
20759509 |
cacac |
20759505 |
T |
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