View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_high_41 (Length: 251)

Name: NF5975_high_41
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_high_41
NF5975_high_41
[»] chr6 (6 HSPs)
chr6 (13-251)||(2902112-2902350)
chr6 (139-241)||(2904186-2904289)
chr6 (13-128)||(2904226-2904342)
chr6 (14-93)||(2902075-2902151)
chr6 (14-93)||(2904135-2904215)
chr6 (196-251)||(2892005-2892060)
[»] chr3 (7 HSPs)
chr3 (29-128)||(34503044-34503141)
chr3 (13-128)||(34485211-34485328)
chr3 (44-128)||(27614455-27614538)
chr3 (139-241)||(34485170-34485273)
chr3 (139-241)||(34503003-34503106)
chr3 (139-241)||(27614414-27614517)
chr3 (174-241)||(34485298-34485364)
[»] chr5 (2 HSPs)
chr5 (44-127)||(14707935-14708018)
chr5 (154-200)||(14707935-14707981)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 2902350 - 2902112
Alignment:
Q  13 aatatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2902350 aatatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagtat 2902251  T
Q  113 attatcactattttttctctttttcaataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactattttttcttgaccaaca 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2902250 attatcactattttttctctttttcaataaattagcactccttaatttatctctatctagaagtaaaaagtatattatcactattttttcttgatcaaca 2902151  T
Q  213 tatctttagaaatattttcatataaaaaataataagaaa 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2902150 tatctttagaaatattttcatataaaaaataataagaaa 2902112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 2904289 - 2904186
Alignment:
Q  139 ataaattaacactccttaatttatctctatctagaagtaaaaa-gtatattatcactattttttcttgaccaacatatctttagaaatattttcatataa 237  Q
    |||||||||| ||| | ||||||| | ||||||||| |||||| |||||||||||||||||||| |  ||||  ||||||||||||||||||||||||||    
T  2904289 ataaattaacgctcttcaatttatatttatctagaaataaaaaagtatattatcactattttttttcaaccagtatatctttagaaatattttcatataa 2904190  T
Q  238 aaaa 241  Q
    ||||    
T  2904189 aaaa 2904186  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 2904342 - 2904226
Alignment:
Q  13 aatatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagt-aaaaagaa 111  Q
    |||||||||||||| |||||||  ||||||| ||| ||| | || | | |||||||||| ||| ||||| ||||||| ||||||||||| | |||||| |    
T  2904342 aatatctttagaaatatttttaaataaaaatgatttataggaaaaaaaattctataaattaacgctcttcaatttatatttatctagaaataaaaaagta 2904243  T
Q  112 tattatcactatttttt 128  Q
    |||||||||||||||||    
T  2904242 tattatcactatttttt 2904226  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 2902151 - 2902075
Alignment:
Q  14 atatctttagaaacatttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatcttt 93  Q
    ||||||||||||| ||||| || ||||||    ||||||| ||||| ||||||||||| | |||||||||||||||||||    
T  2902151 atatctttagaaatattttcatataaaaaa---taataagaaatatttttctataaattatcactctttaatttatcttt 2902075  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 2904215 - 2904135
Alignment:
Q  14 atatctttagaaacatttttatgtaaaaataat-taataagcaatatatttctataaatcaacactctttaatttatcttt 93  Q
    ||||||||||||| ||||| || |||||| ||  ||||||| || || ||||||||||| || ||||||||||||||||||    
T  2904215 atatctttagaaatattttcatataaaaaaaaaataataagaaagatttttctataaattaaaactctttaatttatcttt 2904135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 2892060 - 2892005
Alignment:
Q  196 ttttttcttgaccaacatatctttagaaatattttcatataaaaaa--taataagaaa 251  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||  ||||||||||    
T  2892060 ttttttcttgaccaa--tatctttagaaatatttttatataaaaaaattaataagaaa 2892005  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 34503141 - 34503044
Alignment:
Q  29 tttttatgtaaaaataattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaatattatcactatttttt 128  Q
    ||||||| |||||| ||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34503141 tttttatataaaaa-aattaataaccaatat-tttatataaatgaacactctttaatttatctttatctggaagtaaaaagtatattatcactatttttt 34503044  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 34485328 - 34485211
Alignment:
Q  13 aatatctttagaaacatttttatgtaaaaataa----ttaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaa 108  Q
    |||||||||||||| |||||||| |||||| ||    |||| ||||||||| ||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  34485328 aatatctttagaaatatttttatataaaaaaaaaatcttaa-aagcaatat-tttgtataaattaacaatctttaatttatctttatctagaagtaaaaa 34485231  T
Q  109 gaatattatcactatttttt 128  Q
    | ||||||||||||||||||    
T  34485230 gtatattatcactatttttt 34485211  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 27614538 - 27614455
Alignment:
Q  44 aattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaatattatcactatttttt 128  Q
    |||||||||||||||| ||| ||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  27614538 aattaataagcaatat-tttatataaattaagactctttaatttatctttatctggaagtaaaaagtatattatcactatttttt 27614455  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 34485273 - 34485170
Alignment:
Q  139 ataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactatt-ttttcttgaccaacatatctttagaaatattttcatataa 237  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||||  ||||  || |||| |||||||||||||  |||    
T  34485273 ataaattaacaatctttaatttatctttatctagaagtaaaaagtatattatcactatttttttctcaaccattatttcttgagaaatattttcaactaa 34485174  T
Q  238 aaaa 241  Q
    ||||    
T  34485173 aaaa 34485170  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 34503106 - 34503003
Alignment:
Q  139 ataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactatt-ttttcttgaccaacatatctttagaaatattttcatataa 237  Q
    |||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||  || |||| |||||||||||||  |||    
T  34503106 ataaatgaacactctttaatttatctttatctggaagtaaaaagtatattatcactatttttttctcgaccattatttcttgagaaatattttcaactaa 34503007  T
Q  238 aaaa 241  Q
    ||||    
T  34503006 aaaa 34503003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 27614517 - 27614414
Alignment:
Q  139 ataaattaacactccttaatttatctctatctagaagtaaaaagtatattatcactatt-ttttcttgaccaacatatctttagaaatattttcatataa 237  Q
    ||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||   || |||| |||||||||||||  |||    
T  27614517 ataaattaagactctttaatttatctttatctggaagtaaaaagtatattatcactatttttttctcgaccgttatttcttgagaaatattttcaactaa 27614418  T
Q  238 aaaa 241  Q
    ||||    
T  27614417 aaaa 27614414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 34485364 - 34485298
Alignment:
Q  174 agtaaaaagtatattatcactatttttt-cttgaccaacatatctttagaaatattttcatataaaaaa 241  Q
    |||||||||||||||| |||| |||||| || || |||  |||||||||||||||||| ||||||||||    
T  34485364 agtaaaaagtatattaccactgtttttttctcgatcaa--tatctttagaaatatttttatataaaaaa 34485298  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 14708018 - 14707935
Alignment:
Q  44 aattaataagcaatatatttctataaatcaacactctttaatttatctttatctagaagtaaaaagaatattatcactattttt 127  Q
    |||||||||| ||||  ||| ||||||  || | ||||||||||||||||||||| |||||||||| ||| ||||||| |||||    
T  14708018 aattaataagaaataattttttataaaataataatctttaatttatctttatctataagtaaaaagtataatatcactgttttt 14707935  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 14707981 - 14707935
Alignment:
Q  154 ttaatttatctctatctagaagtaaaaagtatattatcactattttt 200  Q
    ||||||||||| |||||| |||||||||||||| ||||||| |||||    
T  14707981 ttaatttatctttatctataagtaaaaagtataatatcactgttttt 14707935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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