View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_high_48 (Length: 238)

Name: NF5975_high_48
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_high_48
NF5975_high_48
[»] chr5 (5 HSPs)
chr5 (2-217)||(6611755-6611970)
chr5 (29-121)||(8249076-8249168)
chr5 (29-121)||(4926210-4926301)
chr5 (29-121)||(42457106-42457198)
chr5 (29-142)||(17972440-17972553)
[»] chr6 (4 HSPs)
chr6 (46-217)||(24638596-24638768)
chr6 (27-124)||(10303767-10303863)
chr6 (29-124)||(19153932-19154027)
chr6 (36-112)||(17293345-17293421)
[»] chr4 (2 HSPs)
chr4 (29-121)||(40434545-40434637)
chr4 (29-121)||(5634257-5634349)
[»] chr7 (2 HSPs)
chr7 (29-198)||(40682104-40682273)
chr7 (27-110)||(10274879-10274962)
[»] chr2 (1 HSPs)
chr2 (29-105)||(9584030-9584106)
[»] chr1 (2 HSPs)
chr1 (29-190)||(44889608-44889769)
chr1 (35-112)||(48611362-48611439)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 6611755 - 6611970
Alignment:
Q  2 tatcatttgagattcttccacttttgtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaact 101  Q
    |||||||||||||||||||||||||| ||||  | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  6611755 tatcatttgagattcttccacttttgggtggaggcggaggcggaggttgtttgtgtgggaagatgagcagttgggggaactatgtttattacttcaaact 6611854  T
Q  102 gtgattttgcacgttgacaaggacaacagatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctcggg 201  Q
    ||||||||||| |||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6611855 gtgattttgcaggttgacaaggacgacagatgattatggaatctagaaaaatctaatgatttctctgttcgtagtgcttacaattttcagactgctcagg 6611954  T
Q  202 tcattgttgacgctcc 217  Q
    ||||||||||||||||    
T  6611955 tcattgttgacgctcc 6611970  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 8249168 - 8249076
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||||||||||| |||||||| || ||||||||||||  ||||||||| || |||| |||||||||||| ||||||||    
T  8249168 gtggaagtggaggcggaggttgtttgcatgggaagaggagcagttgggggaaaaatgtttattgcttcaaaatgtgattttgcaggttgacaa 8249076  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 4926210 - 4926301
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||||||||||| ||||| || || ||||||||| ||||||||||| |||| |||| |||||||||||| ||||||||    
T  4926210 gtggaagtggaggcggaggttgtttgcatgggaggaggagcagttgggg-aactatgtttactacttcaaagtgtgattttgcaagttgacaa 4926301  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 42457106 - 42457198
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||||||||||||||||| || || ||| |||||||| |||||||||| || |||| ||||| |||||| ||||||||    
T  42457106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtgggggaattatgtttattgcttcaaaatgtgactttgcaagttgacaa 42457198  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 17972553 - 17972440
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 128  Q
    |||| |||||||||| ||||||||||| |||||||| || ||| ||| |||| ||||| |||| || |||| |||||||||||| | |||||| ||  ||    
T  17972553 gtggaagtggaggcgaaggttgtttgcatgggaagaggagcagatggaggaattatgtctattgcttcaaaatgtgattttgcaggctgacaaagaggac 17972454  T
Q  129 agatgattatggaa 142  Q
    |||||  |||||||    
T  17972453 agatggatatggaa 17972440  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 24638596 - 24638768
Alignment:
Q  46 ggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaacagatgattatggaatct 145  Q
    ||||| ||||||||||||| ||  |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||  ||| |||| |    
T  24638596 ggttgcttgcgtgggaagaggagaagttaggggaactatgtttattacttcaaactgtgattttgcaggttgacaaggacgacagatggctattgaatat 24638695  T
Q  146 nnnnnnntctaatgatttctctgttcgtagtgcttacaa-ttttcagactgctcgggtcattgttgacgctcc 217  Q
           ||||||| ||||||  ||||||||| |||||| |||||||| ||||| | | ||||||||||||||    
T  24638696 gaaaaaatctaatgctttctcctttcgtagtgtttacaatttttcagattgctcagcttattgttgacgctcc 24638768  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 10303863 - 10303767
Alignment:
Q  27 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 124  Q
    |||||| ||||||||||||||||||||| || | |||| || ||| ||||||||||  | |||||| |||||||||||| |||||| |||||||||||    
T  10303863 gtgtggaagtggaggcggaggttgtttgtgttg-aagaggagcaggtgggggaacttagattattagtccaaactgtgactttgcaggttgacaagga 10303767  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 19154027 - 19153932
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 124  Q
    |||| |||||||||| ||||||||||| |||||||| ||  || |||| ||||| |||||||||||  ||| ||||| ||| || ||| |||||||    
T  19154027 gtggaagtggaggcgaaggttgtttgcttgggaagaggataaggtgggagaactttgtttattacttgaaaatgtgaatttacaggttaacaagga 19153932  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 17293421 - 17293345
Alignment:
Q  36 tggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 112  Q
    |||||| |||||||||||||||||||||| ||   | ||||||||||  | |||||||| |||| ||||| ||||||    
T  17293421 tggaggtggaggttgtttgcgtgggaagaagagttggtgggggaacttaggttattacttcaaaatgtgactttgca 17293345  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 40434545 - 40434637
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||| || |||| | |||||||||| ||||||||    
T  40434545 gtggaagtggaggcggaggttgtttgcgtgggaagaggagtagttgggggaattatgtttattgcttcaaaatatgattttgcaggttgacaa 40434637  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 5634257 - 5634349
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||| |||||| ||||||||| ||  || |||||||||||||||||||||| || | ||||| |||||| ||||||||    
T  5634257 gtggaagtggaggcggaggctgtttgtgtgggaagaggagaaggtgggggaactatgtttattacttcacaatgtgactttgcatgttgacaa 5634349  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 40682104 - 40682273
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 128  Q
    |||| |||||||| ||||||||||||| ||||| || ||  || |||||||||| ||||||||||| |||| ||| | |||||| ||||| |||||  ||    
T  40682104 gtggaagtggaggaggaggttgtttgcatgggaggaggagaaggtgggggaactttgtttattacttcaaaatgtaactttgcaggttgaaaaggaggac 40682203  T
Q  129 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctc 198  Q
    | |||  | || ||| |       |||||||  ||||||||||||||||||||| |||||| | ||||||    
T  40682204 atatggctttgaaatttggaaaaatctaatgtgttctctgttcgtagtgcttacgattttctgtctgctc 40682273  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 10274879 - 10274962
Alignment:
Q  27 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttg 110  Q
    |||||| |||||||||| ||||||||||||||||| || ||   | ||||||||||  | ||||||||||||||||||| ||||    
T  10274879 gtgtggaagtggaggcgaaggttgtttgcgtgggaggaggaggtggtgggggaacttaggttattactccaaactgtgactttg 10274962  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 9584106 - 9584030
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtga 105  Q
    |||| |||||||||||||||||||||||||||| || || ||| ||| |||  |||||||||| || |||| |||||    
T  9584106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtggtggatttatgtttattgcttcaaaatgtga 9584030  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 44889769 - 44889608
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 128  Q
    |||| ||||||||| |||||| |||| ||||||||| ||  || | |||||||| ||||||||||| |||| ||| | |||||| ||||||| |||  |     
T  44889769 gtggaagtggaggcagaggttatttgtgtgggaagaggagaaggtaggggaactttgtttattacttcaaaatgtaactttgcaggttgacagggaggat 44889670  T
Q  129 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttca 190  Q
    |||||  | |||||| |       ||| |||  | |||||||||||||||||||||||||||    
T  44889669 agatggctttggaatttggaaaaatcttatgcatactctgttcgtagtgcttacaattttca 44889608  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 48611439 - 48611362
Alignment:
Q  35 gtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 112  Q
    |||||||||||||||||| |||||||| || || | | |||  ||||| ||||||||||| |||| ||||| ||||||    
T  48611439 gtggaggcggaggttgttcgcgtgggaggaggatctggtggaagaactttgtttattacttcaaaatgtgactttgca 48611362  T

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