View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_high_6 (Length: 510)
Name: NF5975_high_6
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 1735028 - 1734555
Alignment:
| Q |
18 |
tctacctgctttcataagttcatacaaagaacaaacaaggagacattgtgtccccttgataaataccacattttggcatgaagaaattagatctagcacc |
117 |
Q |
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| T |
1735028 |
tctacctgctttcatcagttcatacaaagaacaaacaaggagacattgtgtccccttgataaataccacattttggcatgaagaaattagatctagcacc |
1734929 |
T |
|
| Q |
118 |
acccacaagacattcatttgcactaatgtcacgcaattcataatgaaattcaccatagttggggga-gaccaatttgcgttagcacattatgaataaacg |
216 |
Q |
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| T |
1734928 |
acccacaagacattcatttgcactaatgtcacgcaattcataatgaaattcaccatagttgggggaagaccaatttgcgttagcacattatgaataaacg |
1734829 |
T |
|
| Q |
217 |
accatttgatagaatcataaaccttagcaagataaacttttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1734828 |
accatttgatagaatcataaaccttagcaagataaacttttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaa |
1734729 |
T |
|
| Q |
317 |
caataacaatactctcacttattttcctcctcggtacaaaatccgtgcaatacaaagacttctcaaaagatcatccattcaagtactactttcgtccaac |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1734728 |
caataacaatactctcacttattttcctcctcggtacaaaatccgtgcaatacaaagacttctcagaagatcatccattcaagtactactttcgtccaac |
1734629 |
T |
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| Q |
417 |
aagtttaactccggagttctgatgatatattttactagtattgatactttaatatgatggaactcggtgtgtata |
491 |
Q |
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| T |
1734628 |
aagtttaactgtggagttctgatgatatattttactagtattgatac-ataatatgatggaactcggtgtgtata |
1734555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 48577580 - 48577508
Alignment:
| Q |
255 |
tttgattgcaaaatagccaatatttcttctcattttagccatactatgaagcatctcctgaacaataacaata |
327 |
Q |
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|||||||||||||||| |||| || ||| ||||||||||||||||||| || |||| || | | ||||||||| |
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| T |
48577580 |
tttgattgcaaaatagacaattttgcttttcattttagccatactatgtagaatctactaagcgataacaata |
48577508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 15052402 - 15052322
Alignment:
| Q |
361 |
gtgcaatacaaagacttctcaaaagatcatccattcaagtactactttcgtcc-aacaagtttaactccggagttctgatg |
440 |
Q |
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|||||| |||| |||||||| ||||||||||||| ||||| | |||||||| |||| |||||||| | ||||||||||| |
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| T |
15052402 |
gtgcaacacaagaacttctcatgagatcatccattctagtaccattttcgtccaaacacgtttaactgcagagttctgatg |
15052322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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