View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_1 (Length: 834)
Name: NF5975_low_1
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 754; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 11 - 820
Target Start/End: Complemental strand, 12508514 - 12507704
Alignment:
| Q |
11 |
atcatcaccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatcttcaaagtattatggcaagaacaagt |
110 |
Q |
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| T |
12508514 |
atcatcaccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatcttcaaagtattatggcaagaacaagt |
12508415 |
T |
|
| Q |
111 |
gatcatcataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaatcgtaggaatcataattacaatcaaatatctg |
210 |
Q |
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| T |
12508414 |
gatcataataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaaccgtaggaatcataattacaatcaaatatctg |
12508315 |
T |
|
| Q |
211 |
ctttggatatgaagaacattgagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctagggtttctgattgtagctctgaatg |
310 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508314 |
ctttggatatgaagaacatagagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctagggtttctgattgtagctctgaatg |
12508215 |
T |
|
| Q |
311 |
gtttggatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaatattaatgttggtgatcaaggttttttggaa |
410 |
Q |
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| T |
12508214 |
gtttggatttcagaatctagggttagattctgatggatctgatataggagagattaacaataatgctaatattaatgttggtgatcaaggttttttggaa |
12508115 |
T |
|
| Q |
411 |
caactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatcttcttctgttcttgtgcctccaactt |
510 |
Q |
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| T |
12508114 |
caactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatcttcttctgttcttgtgcctccaactt |
12508015 |
T |
|
| Q |
511 |
tctctagttctccttatgattgtggttcaccttatagtggttatgcttctccatataatagttgtggatccccttgtaatggttatgcctctccttatta |
610 |
Q |
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| T |
12508014 |
tctctagttctccttatgattgtggttcaccttatagtggttatgcttctccatataatagttgtggatccccttgtaatggttatgcctctccttatta |
12507915 |
T |
|
| Q |
611 |
tggtagcaagaagtaaaattgaaagaacatgaaattcgtgtttggattaacggtaagtccaatggaatcacgatggatcactgtgattttggtagaaact |
710 |
Q |
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| T |
12507914 |
tggtagcaagaagtaaaattggaagaacatgaaattcgtgtttggattaacggcaagtccaatggaatcacgatggatcactctgattttggtagaaact |
12507815 |
T |
|
| Q |
711 |
aaactttggagaatg-nnnnnnnttatcatggtgtcaccgtgatttcgttgaaattctcctcaatccaaacatgcatgtaatgatattgataatcataat |
809 |
Q |
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| T |
12507814 |
aaactttggagaatgaaaaaaaattatcatggtgtcaccgtgatttcgttgaaattctcctcaatccaaacatgcatgtaatgatattgataatcataat |
12507715 |
T |
|
| Q |
810 |
ggtgcttcttg |
820 |
Q |
| |
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| T |
12507714 |
ggtgcttcttg |
12507704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 280 - 528
Target Start/End: Complemental strand, 21279607 - 21279361
Alignment:
| Q |
280 |
cttctagggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaa |
379 |
Q |
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||||||| |||||||||||||| |||||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
21279607 |
cttctagtgtttctgattgtagttctgaatggtttggatatcataataaagggttagattatgatggatgtgatataggagagattaatattaatgctaa |
21279508 |
T |
|
| Q |
380 |
tattaatgttggtgatcaaggtttttt-ggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaa |
478 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
21279507 |
tattaatgttggtgatcaaggtttttttggaacaactcatgggatggattgatgat---agttctgatatttgtgaaggttcaagtagtaaaaggtttaa |
21279411 |
T |
|
| Q |
479 |
ggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21279410 |
ggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
21279361 |
T |
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