View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_11 (Length: 431)
Name: NF5975_low_11
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 43160093 - 43159681
Alignment:
| Q |
19 |
agttattgttccaccaatagttaaacaacacttaaggatcatgagctgcttattttagttgttaattaattaaatacgcgtatgatcttgctaaattaat |
118 |
Q |
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| T |
43160093 |
agttattgttccaccaatagttgaacaacacttaaggatcatgagctgcttattttagttgttaattaattaaatacgcgtatgatcttgctaaattaat |
43159994 |
T |
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| Q |
119 |
aaatatatgttgatttctgttgaatttggttcattttcagcaatgatgttaaggaatttatgttggtttgtcttaatatattgttaagtcattctgcatg |
218 |
Q |
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| T |
43159993 |
aaatatatgttgatttctgttgaatttggttcattttcagcaatgatgttaaggaatttatgttggtttgtcttaatatattgttaagtcattctgcatg |
43159894 |
T |
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| Q |
219 |
gtacacatgatgttgaaatgctacatttagtggtacttatttctttattataatcattttttgcttaaaacacactttttctagaactcttttgtcatgt |
318 |
Q |
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| T |
43159893 |
gtacacatgatgttgaaatgctacatttagtggtacttatttctttattataatcattttttgcttaaaacacactttttctagaactcttttgtcatgt |
43159794 |
T |
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| Q |
319 |
tttctattttcttaatcctatttaggtgttgatgtagaagatatagcatgtagtgtatgacatttggggtatataattttttaattagatatgcttgacc |
418 |
Q |
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| T |
43159793 |
tttctattttcttaatcctatttaggtattgatgaagaagatatagcatgtagtgtatgacatttggggtatataattttttaattagatatgcttgacc |
43159694 |
T |
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| Q |
419 |
ggttaggaagctt |
431 |
Q |
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| T |
43159693 |
ggttaggaagctt |
43159681 |
T |
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