View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5975_low_12 (Length: 407)
Name: NF5975_low_12
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 21 - 397
Target Start/End: Complemental strand, 2913496 - 2913120
Alignment:
| Q |
21 |
tgacggactttcatattgatttgagttgttatcctgtcgcatatattttgtcaacacagatatgagacacgtgattctataaaagaattaaaaaatgaat |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2913496 |
tgacggactttcatattgatttgagtttttatcctgtcgcatatattttgtcaacacagatatgagacacgtgattctataaaagaattaaaaaatgaat |
2913397 |
T |
|
| Q |
121 |
aggtttggcttgtgcctgctaaacaaatacctgctttagatgtatgaagatggttagagtgtaatattattttcatttgcgacttttggacaggtggtaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2913396 |
aggtttggcttgtgcctgctaaacaaatacctgctttagatgtatgaagatggttagagtgtaatattattttcatttgcgacttttggacaggtggtaa |
2913297 |
T |
|
| Q |
221 |
atatcatggaccgatgatttgcttctgttgtgcgataatcatgattaactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaattt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2913296 |
atatcatggaccgatgatttgcttctgttgtgcgataatcatgattaactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaattt |
2913197 |
T |
|
| Q |
321 |
ctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctgcatgactttacggcctatg |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2913196 |
ctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctgcatgactttacggcctatg |
2913120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 267 - 377
Target Start/End: Complemental strand, 2919333 - 2919224
Alignment:
| Q |
267 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
366 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||||||||||||| | ||||||||| ||| |||||||||||||||||||||| | |||||||||| ||| |
|
|
| T |
2919333 |
aactgatcacattg-ggttttatgctgaaattcaagaatgaagatattgaatttctcatggagtccaagaatttacagattttctttgaggatgagaagt |
2919235 |
T |
|
| Q |
367 |
tcctaagttct |
377 |
Q |
| |
|
|||| |||||| |
|
|
| T |
2919234 |
tcctcagttct |
2919224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 379
Target Start/End: Complemental strand, 37794201 - 37794093
Alignment:
| Q |
270 |
tgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcc |
369 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||||| | ||||| || | |||||||| | || |||||| || ||| |
|
|
| T |
37794201 |
tgatcacattg-ggttttgtgctgaaattcaagaatgaagatattgaatttctgatggaatccaaaaacatgcagattttctgggaagatgagaagctcc |
37794103 |
T |
|
| Q |
370 |
taagttctgc |
379 |
Q |
| |
|
| |||||||| |
|
|
| T |
37794102 |
tcagttctgc |
37794093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 379
Target Start/End: Original strand, 3013947 - 3014058
Alignment:
| Q |
267 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
366 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||| ||||||||||||||| ||| ||||| ||| | ||||||||| | |||||| |||||||||||||| |
|
|
| T |
3013947 |
aactaatcacattg-ggttttgtgatgaaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagt |
3014045 |
T |
|
| Q |
367 |
tcctaagttctgc |
379 |
Q |
| |
|
| || |||||||| |
|
|
| T |
3014046 |
ttctcagttctgc |
3014058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 378
Target Start/End: Complemental strand, 2945476 - 2945366
Alignment:
| Q |
267 |
aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagt |
366 |
Q |
| |
|
|||| ||||||||| |||| |||| ||||| ||||||||||||||| ||| ||||| ||| | || |||||||| |||||| ||| |||||||||| |
|
|
| T |
2945476 |
aactaatcacattg-ggttatgtgatgaaattcaagaatgaagaaattgattttctcatggaatcgaagaatttgcagattgaacatgcagatgaggagt |
2945378 |
T |
|
| Q |
367 |
tcctaagttctg |
378 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
2945377 |
tcctcagttctg |
2945366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 2908508 - 2908394
Alignment:
| Q |
78 |
agatatgagacacgtgattctataaaagaattaaaaaatgaataggtttggcttgtgcctgctaaacaaatacctgctttagatgtatgaagatggt-ta |
176 |
Q |
| |
|
||||| || |||| ||||| |||| ||||| | ||||||| ||||||||| ||||||| |||||||||||||||| ||| ||| ||||||| || | |
|
|
| T |
2908508 |
agataagaaacacttgattttatagaagaaatgaaaaatggataggtttg-cttgtgc----taaacaaatacctgctgtagctgtgtgaagatagtgca |
2908414 |
T |
|
| Q |
177 |
gagtgtaatattattttcat |
196 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
2908413 |
gagtgtaatattactttcat |
2908394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 379
Target Start/End: Complemental strand, 2928818 - 2928724
Alignment:
| Q |
285 |
tttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcctaagttctgc |
379 |
Q |
| |
|
||||| |||||| | ||||||||||||| ||| ||||| ||| | ||||||||| | |||||| |||||||||||||||||| |||||||| |
|
|
| T |
2928818 |
tttgttctgaaatttaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagttcctcagttctgc |
2928724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 381
Target Start/End: Complemental strand, 28023214 - 28023104
Alignment:
| Q |
270 |
tgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagattttttatgaggatgaggagttcc |
369 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| | |||||| |||||| | ||||| || ||||||||||| | |||||||||| || ||| |
|
|
| T |
28023214 |
tgatcacattg-ggttttgtgctgaaattcaagaatgaagatattgaattcctgatggaatccaacaacttacagattttctgtgaggatgagaagctcc |
28023116 |
T |
|
| Q |
370 |
taagttctgcat |
381 |
Q |
| |
|
| |||||||||| |
|
|
| T |
28023115 |
tcagttctgcat |
28023104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University