View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_low_15 (Length: 383)

Name: NF5975_low_15
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_low_15
NF5975_low_15
[»] chr4 (24 HSPs)
chr4 (23-373)||(6614246-6614596)
chr4 (26-361)||(23158365-23158700)
chr4 (26-337)||(36279418-36279729)
chr4 (23-366)||(15649279-15649622)
chr4 (26-361)||(51872357-51872692)
chr4 (23-285)||(18116594-18116857)
chr4 (53-363)||(17838776-17839086)
chr4 (26-362)||(8110589-8110925)
chr4 (45-281)||(22340331-22340567)
chr4 (225-363)||(4723310-4723448)
chr4 (53-281)||(29123681-29123908)
chr4 (53-321)||(15705802-15706070)
chr4 (39-321)||(4303430-4303712)
chr4 (23-327)||(12915497-12915801)
chr4 (71-337)||(29192575-29192841)
chr4 (138-329)||(12290496-12290687)
chr4 (71-298)||(34994461-34994688)
chr4 (71-298)||(50694014-50694241)
chr4 (179-364)||(3621238-3621423)
chr4 (53-298)||(36950936-36951181)
chr4 (80-286)||(24059390-24059596)
chr4 (71-298)||(17469384-17469611)
chr4 (147-328)||(25134983-25135164)
chr4 (23-115)||(3621420-3621512)
[»] chr2 (11 HSPs)
chr2 (23-366)||(27914813-27915156)
chr2 (24-373)||(23384516-23384852)
chr2 (24-367)||(21963074-21963417)
chr2 (26-357)||(32349550-32349881)
chr2 (26-220)||(30275703-30275896)
chr2 (39-281)||(38938224-38938466)
chr2 (230-361)||(30274400-30274532)
chr2 (72-358)||(33937038-33937322)
chr2 (57-358)||(22298587-22298888)
chr2 (72-358)||(1258135-1258422)
chr2 (80-186)||(20007345-20007451)
[»] chr7 (22 HSPs)
chr7 (23-367)||(9403337-9403681)
chr7 (23-366)||(37075802-37076145)
chr7 (23-366)||(34981514-34981857)
chr7 (26-361)||(12121258-12121593)
chr7 (26-359)||(24819371-24819704)
chr7 (26-358)||(36575597-36575929)
chr7 (183-373)||(3483065-3483256)
chr7 (25-362)||(40891978-40892315)
chr7 (26-279)||(586538-586791)
chr7 (135-362)||(21607909-21608136)
chr7 (138-359)||(31252892-31253113)
chr7 (23-361)||(20705704-20706042)
chr7 (23-361)||(20873748-20874086)
chr7 (23-322)||(27278313-27278612)
chr7 (57-358)||(27868585-27868876)
chr7 (72-286)||(18815654-18815868)
chr7 (72-172)||(27990212-27990312)
chr7 (71-303)||(45649421-45649653)
chr7 (71-298)||(47553024-47553251)
chr7 (94-186)||(8457467-8457559)
chr7 (227-291)||(22866164-22866228)
chr7 (147-286)||(5196380-5196519)
[»] chr5 (11 HSPs)
chr5 (23-366)||(10462349-10462692)
chr5 (24-367)||(5825182-5825525)
chr5 (23-366)||(6678788-6679131)
chr5 (26-281)||(27891450-27891705)
chr5 (87-276)||(11265782-11265971)
chr5 (57-352)||(31962918-31963213)
chr5 (101-303)||(38931499-38931701)
chr5 (287-363)||(3998524-3998600)
chr5 (57-281)||(29150057-29150281)
chr5 (101-291)||(8895126-8895316)
chr5 (227-298)||(29322528-29322599)
[»] chr3 (21 HSPs)
chr3 (23-363)||(17154019-17154360)
chr3 (23-366)||(53152297-53152640)
chr3 (23-362)||(23571833-23572172)
chr3 (26-333)||(3514384-3514691)
chr3 (138-367)||(32945557-32945786)
chr3 (26-358)||(9818733-9819067)
chr3 (26-362)||(48547225-48547561)
chr3 (23-363)||(42462390-42462730)
chr3 (238-363)||(44879665-44879790)
chr3 (161-359)||(9246703-9246901)
chr3 (72-274)||(30737247-30737449)
chr3 (157-285)||(8542253-8542381)
chr3 (53-360)||(23602936-23603243)
chr3 (22-327)||(42459503-42459807)
chr3 (71-315)||(10753781-10754025)
chr3 (53-327)||(8594963-8595237)
chr3 (71-358)||(39633092-39633379)
chr3 (71-298)||(16663711-16663938)
chr3 (71-298)||(52196022-52196249)
chr3 (239-316)||(52962633-52962710)
chr3 (146-186)||(28393365-28393405)
[»] chr8 (6 HSPs)
chr8 (23-366)||(2959802-2960145)
chr8 (26-363)||(26077941-26078278)
chr8 (26-362)||(31423430-31423766)
chr8 (88-321)||(26390518-26390751)
chr8 (88-337)||(29529870-29530118)
chr8 (71-298)||(10801940-10802168)
[»] chr6 (9 HSPs)
chr6 (26-361)||(18295611-18295946)
chr6 (26-363)||(2893907-2894244)
chr6 (23-364)||(28605099-28605440)
chr6 (74-281)||(667016-667222)
chr6 (71-298)||(5391777-5392004)
chr6 (147-286)||(17227675-17227814)
chr6 (147-281)||(7218686-7218820)
chr6 (87-285)||(9759779-9759977)
chr6 (147-298)||(14223505-14223656)
[»] chr1 (13 HSPs)
chr1 (23-285)||(41343020-41343282)
chr1 (23-361)||(10003603-10003941)
chr1 (26-337)||(27029648-27029959)
chr1 (138-363)||(44753748-44753973)
chr1 (170-361)||(48759777-48759968)
chr1 (85-362)||(5556938-5557215)
chr1 (26-321)||(49369479-49369774)
chr1 (147-358)||(37666028-37666239)
chr1 (72-281)||(45757435-45757644)
chr1 (80-285)||(40392461-40392658)
chr1 (248-361)||(32152387-32152500)
chr1 (80-171)||(26995826-26995917)
chr1 (233-286)||(26995712-26995765)
[»] scaffold0041 (1 HSPs)
scaffold0041 (25-362)||(73969-74306)
[»] scaffold0032 (1 HSPs)
scaffold0032 (23-363)||(58608-58948)
[»] scaffold0003 (1 HSPs)
scaffold0003 (147-281)||(225060-225194)
[»] scaffold0289 (1 HSPs)
scaffold0289 (72-170)||(10928-11026)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 373
Target Start/End: Original strand, 6614246 - 6614596
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614246 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 6614345  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6614346 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacatgaggatttttcaaaaccaaattgttca 6614445  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6614446 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtttgttttttattattcttattggagacaaaac 6614545  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 373  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6614546 cctttaccttgtttaaatactattttgtaaagtcttttttttgggcctttg 6614596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 26 - 361
Target Start/End: Original strand, 23158365 - 23158700
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  23158365 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaa 23158464  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||    
T  23158465 agaattctatgaaagcttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 23158564  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||||||||| |||||||| |||||| | |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| | |    
T  23158565 ggaagttctacttgaaagagtcaaatttcaaacgttttggtggttgaaagctaactgcatcttgttcgttttttattattcttattggagaaaaaatcat 23158664  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    |||||||||||| | ||| |||||||||||||||||    
T  23158665 ttaccttgtttacagactgttttgtaaagtctgttt 23158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 26 - 337
Target Start/End: Original strand, 36279418 - 36279729
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  36279418 ttatggcttatgctatcggattggttaggttttgttacggttttcaatggcaatttatatactcatgctaatcagttttgcgctcttggaggtttctcaa 36279517  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  36279518 agaattatatgaaagcttttactattatttggatttcggtcttatatactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 36279617  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |    
T  36279618 ggaagttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgttttttattattcttattggagaaaaaatctt 36279717  T
Q  326 ttaccttgttta 337  Q
    ||||||||||||    
T  36279718 ttaccttgttta 36279729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 15649279 - 15649622
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| || |||||||||||||| |||||||||||||| |||||||| ||||    
T  15649279 cggttatggcttatgctatcagattggttaggttttgtcacggcgctcaatggaaacttatattcacatgctaatcagttttgtgcacttggaggattct 15649378  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  15649379 caaagcattctatgcaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttca 15649478  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  15649479 tatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 15649578  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    || ||| |||||||| | |||||| |||||||||||||||||||    
T  15649579 ccattatcttgtttacagactattgtgtaaagtctgttttttgg 15649622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 26 - 361
Target Start/End: Complemental strand, 51872692 - 51872357
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| | ||||| ||||||||||||| ||| |||||||||||||    
T  51872692 ttatggcttatgctatcggattggttaggtttggttacagttcttaatggcaattcatatactcatgctaatcagttttgtggtctaggaggtttctcaa 51872593  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| ||||||||||||| |||| ||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||| |||    
T  51872592 agaattctatgaaagcttttactattatttggatatcggccttatatactatttggaaaaatcgcaacaggaggattttccaaaaccaaattgttctttt 51872493  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| | | || |||    
T  51872492 ggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggaaaaataatcct 51872393  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    ||||||| |||| | | | | |||||||||||||||    
T  51872392 ttaccttatttacagattgtgttgtaaagtctgttt 51872357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 18116594 - 18116857
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| | ||||||||||||||| || |||| ||||||||||| ||||||||||| ||||    
T  18116594 cggttatggcttttgctatcggattggcttggttttgttacggtttttaatggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttct 18116693  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttc-aaaaccaaattgttc 221  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||    
T  18116694 caaagaattctatgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggattttccaaaaaccaaattgttc 18116793  T
Q  222 atttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 285  Q
    ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18116794 atttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 18116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 363
Target Start/End: Original strand, 17838776 - 17839086
Alignment:
Q  53 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 152  Q
    ||||||||||||||  |  |||||||||||||| ||||||| |||||||||||||||||||| || || |||||||||||  ||||||| || |||||||    
T  17838776 ggttttgttacggtgtttcatggcaatttatatacacatgctaatcagttttgtgctcttgggggcttttcaaagaattccatgaaagctttgtctatta 17838875  T
Q  153 tttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 252  Q
    ||||||||| ||| ||||||  ||| |||||||||||||||| || |||||| |||||||| || | |||| | |||| ||||||||||||||| |||||    
T  17838876 tttggattttggttttatttgttatttggaaagatcgcaacatgaagattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaact 17838975  T
Q  253 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 352  Q
     ||||| ||||||||| ||||||| |||| |||  |||||  |||| ||||| | | |||||||||||| || |||  ||||||| | |||   ||||||    
T  17838976 tcaaactttttggtggatgaaagcaaacttcatcatgttcacttttgattatcccttttggagacaaaatcccttatgttgtttacagactgccttgtaa 17839075  T
Q  353 agtctgttttt 363  Q
     ||||||||||    
T  17839076 tgtctgttttt 17839086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 26 - 362
Target Start/End: Complemental strand, 8110925 - 8110589
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||  || ||||| ||||||| ||| |||||| |||  |  |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  8110925 ttatggctcttgatatcgaattggtttggtattgttaaggtgtttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaa 8110826  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    ||||||||  || ||| ||| ||||||| ||||||||||||||||||  ||| ||||| || |||||||||||||||||||| |||||| |||  ||| |    
T  8110825 agaattctaggacagcttttactattatatggatttcggtcttatttgttatttggaaggaccgcaacaggaggatttttcagaaccaagttgaacatct 8110726  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
     |||| |||| |||||||||| ||||| || || | ||||||| |||||||  ||| |||    |||| |||| ||||| | | |||||||||||| |||    
T  8110725 cgaagctctttttgaaagggttaaacttcagacttattggtggctgaaagcagacttcatcactttcgcttttgattatcccttttggagacaaaatcct 8110626  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgtttt 362  Q
    |||| ||||||| | ||| || ||||| |||||||||    
T  8110625 ttacattgtttacagactgttgtgtaatgtctgtttt 8110589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 45 - 281
Target Start/End: Complemental strand, 22340567 - 22340331
Alignment:
Q  45 attggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcatt 144  Q
    ||||||| ||||||||||||||  |  |||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||    
T  22340567 attggtttggttttgttacggtgtttcatggcaatttatatcctcatgctaatcagttttgtgctcttggaggtttttcaaagaattctatgaaagcttt 22340468  T
Q  145 ttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagg 244  Q
     |||||||||||||||| ||| ||||||  ||||||||||||||||||   || |||||| |||||| | || | |||| | |||| ||||||||||| |    
T  22340467 gtctattatttggattttggttttatttgttatatggaaagatcgcaatttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaag 22340368  T
Q  245 gtcaaactccaaacgttttggtggttgaaagctaact 281  Q
    || ||||| ||||| ||||||||| ||||||| ||||    
T  22340367 gttaaacttcaaactttttggtggatgaaagcaaact 22340331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 4723310 - 4723448
Alignment:
Q  225 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 324  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||    
T  4723310 tggaagttcttattaaaagggtcaaacttcaaacgttttggtggttgaaggctaactacatcttgttcgtttttgattattcttattggagacaaaatcc 4723409  T
Q  325 tttaccttgtttaaatactattttgtaaagtctgttttt 363  Q
    ||||||||||||| | ||| |||||||||||||||||||    
T  4723410 tttaccttgtttacagactgttttgtaaagtctgttttt 4723448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 53 - 281
Target Start/End: Original strand, 29123681 - 29123908
Alignment:
Q  53 ggttttgttacggt-tctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatt 151  Q
    |||||||||||||| | |||| |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| || ||||||    
T  29123681 ggttttgttacggtgtttcaa-ggcaatttatatcctcatgctaatcagttttgtgctcttggaggttt-tcaaagaattctatgaaagctttgtctatt 29123778  T
Q  152 atttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaac 251  Q
    |||||||||||||| ||||||  ||| ||||||||||||||   ||||||||| |||||| | || | |||| | |||| ||||||||||| ||| ||||    
T  29123779 atttggatttcggttttatttgttatttggaaagatcgcaatttgaggattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaac 29123878  T
Q  252 tccaaacgttttggtggttgaaagctaact 281  Q
    | ||||| ||||||||| ||||||| ||||    
T  29123879 ttcaaactttttggtggatgaaagcaaact 29123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 53 - 321
Target Start/End: Original strand, 15705802 - 15706070
Alignment:
Q  53 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 152  Q
    |||||||||||||| ||  |||||||||||||| | ||||| || || |||||||| ||||||| ||| ||||||| ||||  |||||| || ||||||     
T  15705802 ggttttgttacggtgcttcatggcaatttatatacccatgctaaccaattttgtgcccttggagatttttcaaagagttctacgaaagctttatctattg 15705901  T
Q  153 tttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 252  Q
    ||||||||||||| ||||||| ||| |||||||||||||| | || |||||| |||||||| || | |||| | |||| ||||||||||||||| |||||    
T  15705902 tttggatttcggttttatttattatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaact 15706001  T
Q  253 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 321  Q
     ||||| ||||||||| |||||||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  15706002 tcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaa 15706070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 39 - 321
Target Start/End: Original strand, 4303430 - 4303712
Alignment:
Q  39 tatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaa 138  Q
    ||||| ||||| | ||||||||||||||  |  |||||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||| ||||  |||    
T  4303430 tatcgaattggcttggttttgttacggtgtttcatggcaatttatatacccatgctaatcaattttgtgcccttggaggtttttcaaagagttctacgaa 4303529  T
Q  139 agcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttctt 238  Q
    ||| || |||||| ||||||||||| | ||||||  ||| |||||||||||||| | || |||||| |||||||| || | |||| | |||| |||||||    
T  4303530 agctttgtctattgtttggatttcgattttatttgttatttggaaagatcgcaatatgaagattttccaaaaccatatgggtcatcttgaagctcttctt 4303629  T
Q  239 gaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 321  Q
    |||||||| ||||| ||||| ||||||||| |||||||  ||| ||||  ||||  |||| ||||| | | ||||||||||||    
T  4303630 gaaagggttaaacttcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaa 4303712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 12915801 - 12915497
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||  || ||||| | ||| | ||| ||||||||||| |  |||| |||||| || | ||||| ||||| ||||||||||| || || ||||    
T  12915801 cggttatggctcttggtatcgcagtggcttggtattgttacggttttacatggtaatttacatactcatgctaatcatttttgtgctctcggtggcttct 12915702  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||| ||  |||  |  ||| ||| ||||||||| |||||||||||||| |  |||||||||||||||||||||||| ||||| ||||| ||  ||| |||    
T  12915701 caaggaggtctacgttagcgtttactattatttagatttcggtcttatatgttatatggaaagatcgcaacaggagaattttccaaaatcactttgatca 12915602  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | | |||| |||| | |||||||| ||||| ||||||| ||||||||||||||| |||| ||||   ||||||||| | |||   | ||||||||||||     
T  12915601 tctagaagctcttatggaaagggttaaacttcaaacgtattggtggttgaaagcaaacttcattacattcgtttttgactatcacttttggagacaaaat 12915502  T
Q  323 ccttt 327  Q
    |||||    
T  12915501 ccttt 12915497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 71 - 337
Target Start/End: Original strand, 29192575 - 29192841
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||| ||||||||||   ||| |||||||||||||| ||||| ||||| || ||| ||| ||  ||| ||||||||||||||||||| ||||    
T  29192575 aatggtaatttacattcacatgcttctcaattttgtgctcttgggggtttttcaaaaaactctatgacaggttttactattatttggatttcggttttat 29192674  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || | ||||||| | |||||||| ||||||||  | ||  ||| | || | |||| ||| ||||||||||| |||||||||||||||||||||||    
T  29192675 tcgtcatttagaaagatagaaacaggagaatttttcagcatcattttgattatcttgaagctctacttgaaagggttaaactccaaacgttttggtggtt 29192774  T
Q  271 gaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 337  Q
    |||||| || |||||  |||||| |||| | ||| | ||||||||  |||| ||||||| |||||||    
T  29192775 gaaagcgaattacatcatgttcgattttgactatccctattggaggaaaaatcctttactttgttta 29192841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 329
Target Start/End: Complemental strand, 12290687 - 12290496
Alignment:
Q  138 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 237  Q
    |||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| || || ||||||||||| ||||||| ||  ||| | |||| ||||      
T  12290687 aagcttttactattatttggatttcggtcttatttgttatttggaaagatcgaaatagaaggatttttcagaaccaaagtgaacatctcgaagctctttc 12290588  T
Q  238 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttac 329  Q
     |||||||| ||||| || || | ||||||||||||||| |||| |||  |||||  |||| | ||||| | ||||||||||||||||||||    
T  12290587 ggaaagggttaaacttcagacttattggtggttgaaagcaaacttcatcatgttcacttttgactattccttttggagacaaaaccctttac 12290496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 298
Target Start/End: Complemental strand, 34994688 - 34994461
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  34994688 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 34994589  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || ||||||||| | |||||||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  34994588 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 34994489  T
Q  271 gaaagctaactacattttgttcgttttt 298  Q
    |||||| || ||||||||||||| ||||    
T  34994488 gaaagcgaattacattttgttcgatttt 34994461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 298
Target Start/End: Original strand, 50694014 - 50694241
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || | |  || |   ||| |  |||||||||||||||| ||||    
T  50694014 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtgtaggacatgttttacagttatttggatttcggttttat 50694113  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||||||||||||||||||| ||||| ||||||||||||||| |    
T  50694114 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaaacttcaaacgttttggtggct 50694213  T
Q  271 gaaagctaactacattttgttcgttttt 298  Q
    |||||| || | |||| |||||| ||||    
T  50694214 gaaagcgaattgcattatgttcgatttt 50694241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 179 - 364
Target Start/End: Complemental strand, 3621423 - 3621238
Alignment:
Q  179 tggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 278  Q
    ||||||||||| ||||||||||||||||| ||||||| ||  ||| | |||| |||| |||||||||| ||||| || || | ||||||||||||||| |    
T  3621423 tggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagacttattggtggttgaaagcaa 3621324  T
Q  279 actacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttttt 364  Q
    |||   |  |||||| |||| | ||||||| |||||||||||||| ||||| ||||||| | ||| |  ||||| |||||||||||    
T  3621323 actttgtcatgttcgcttttgactattctttttggagacaaaaccatttacattgtttacagactgtcatgtaatgtctgtttttt 3621238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 298
Target Start/End: Complemental strand, 36951181 - 36950936
Alignment:
Q  53 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 152  Q
    |||||||||||   ||| ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||    
T  36951181 ggttttgttacaactctgaatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaaatctaggacaggatttacagtta 36951082  T
Q  153 tttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 252  Q
    | ||||| || || |||||    || ||||||||||| ||||| || |||||||| || ||  ||| |||| | |||| ||||||||||||| | |||||    
T  36951081 tctggatgtctgttttattcgtcatttggaaagatcgaaacagaagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaact 36950982  T
Q  253 ccaaacgttttggtggttgaaagctaactacattttgttcgttttt 298  Q
     ||||||||||||||| ||||||| || ||| || |||||| ||||    
T  36950981 tcaaacgttttggtggctgaaagcgaattacgttatgttcgatttt 36950936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 286
Target Start/End: Complemental strand, 24059596 - 24059390
Alignment:
Q  80 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 179  Q
    |||||| | ||| ||||||||||||  |||||| |||| ||||||||||||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  24059596 ttatatgctcattcaaatcagttttaagctcttagagggttctcaaagaattcaaggacatcattctctattatttggatttcggtcttatttgttatct 24059497  T
Q  180 ggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 279  Q
    | ||||| || ||||  || |||||| | || ||  ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  24059496 gaaaagaccgtaacaatagaattttttataatcattttgatcagcttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 24059397  T
Q  280 ctacatt 286  Q
    |||||||    
T  24059396 ctacatt 24059390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 298
Target Start/End: Original strand, 17469384 - 17469611
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttcta-ttatttggatttcggtctta 169  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || ||  |||| || ||||||| ||||| |  |||    
T  17469384 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacagg-ttttatagttatttgaatttcagcttta 17469482  T
Q  170 tttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 269  Q
    ||    || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||| |||||||||     
T  17469483 ttcgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacattttggtggc 17469582  T
Q  270 tgaaagctaactacattttgttcgttttt 298  Q
    ||||||| || |||||| |||||| ||||    
T  17469583 tgaaagcgaattacattatgttcgatttt 17469611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 328
Target Start/End: Complemental strand, 25135164 - 25134983
Alignment:
Q  147 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 246  Q
    |||||||||||||||| |||||||||  ||| ||||||||||| ||||| ||  ||||||| ||  |  | | |||  | | ||  ||||| |||| |||    
T  25135164 ctattatttggatttcagtcttatttgttatttggaaagatcgtaacagtagagtttttcataatgacttggatcagcttgcagggcttctcgaaaaggt 25135065  T
Q  247 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacccttta 328  Q
     |||| |||||| | ||||||||||||||| ||||||||| ||||||  ||  | ||||||| |||||| ||||| ||||||    
T  25135064 taaacaccaaacttattggtggttgaaagcgaactacattatgttcgacttcgagtattctttttggaggcaaaatccttta 25134983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 3621512 - 3621420
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttgga 115  Q
    |||||||||||  || || || ||||||| ||| ||||||| ||  |  |||||||| ||| |||||||||  ||||||||||||||||||||    
T  3621512 cggttatggctcttgttaacgaattggtttggtattgttactgtgtttcatggcaatctattttcacatgctcatcagttttgtgctcttgga 3621420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 27914813 - 27915156
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27914813 cggttatggcttatgatatcagattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaaccagttttgtgctcttggaggtttct 27914912  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27914913 caaagaattctttgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttca 27915012  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27915013 tttgaaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggagacaaaac 27915112  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    ||||||||||||||| | | ||||||||||||||||||||||||    
T  27915113 cctttaccttgtttacagaatattttgtaaagtctgttttttgg 27915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 24 - 373
Target Start/End: Complemental strand, 23384852 - 23384516
Alignment:
Q  24 ggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23384852 ggttatggcttatgctatcgaattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtactcttggaggtttctc 23384753  T
Q  124 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23384752 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcacaacaggaggatttttcaaaaccaaattgttcat 23384653  T
Q  224 ttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacc 323  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||             ||||||||||||||    
T  23384652 ttggaagttcttcttgaaagggtcaaactccaaatgttttggtggttgaaagctaactacatattgttcgttt-------------ttggagacaaaacc 23384566  T
Q  324 ctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 373  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||    
T  23384565 ctttaccttgtttacagactattttgtaaagtctgttttttgggcctttg 23384516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 21963417 - 21963074
Alignment:
Q  24 ggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc 123  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  21963417 ggttatggcttatgctatcagattggttaggttttgtgacggttcttaatggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctc 21963318  T
Q  124 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcat 223  Q
    |||| ||| | || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21963317 aaagcattttgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcat 21963218  T
Q  224 ttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacc 323  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  21963217 ctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaacc 21963118  T
Q  324 ctttaccttgtttaaatactattttgtaaagtctgttttttggg 367  Q
    |||||| ||||||| | |||||| ||||||||||||||||||||    
T  21963117 ctttacattgtttacagactattgtgtaaagtctgttttttggg 21963074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 357
Target Start/End: Complemental strand, 32349881 - 32349550
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| |||||||||||||    
T  32349881 ttatggcttatgctatcggattggttaggatttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaa 32349782  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  32349781 agaattctatgaaagcttttactattatttggatttcggtcttatacactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 32349682  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    | | || || |||||||| |||||||| ||||||||||||| |||||||| ||||||||| |||||||||||| |||| ||||||||||||  ||| |||    
T  32349681 gaaggtgctacttgaaagagtcaaacttcaaacgttttggtagttgaaagttaactacatcttgttcgtttttgattactcttattggagaataaatcct 32349582  T
Q  326 ttaccttgtttaaatactattttgtaaagtct 357  Q
    |||||||||||| | ||| |||||||||||||    
T  32349581 ttaccttgtttacagactgttttgtaaagtct 32349550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 30275896 - 30275703
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||| ||||| | |||||||||||    
T  30275896 ttatgacttatgttatcggattggttaggttttgttacggttctcaacggcaatttatatactcatgctaatcagttttgcgctctag-aggtttctcaa 30275798  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgtt 220  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  30275797 agaattctatgaaagcttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacaggagaattttccaaaaccaaattgtt 30275703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 39 - 281
Target Start/End: Complemental strand, 38938466 - 38938224
Alignment:
Q  39 tatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaa 138  Q
    ||||| ||||| | |||||||||| |||  | ||||||||||||||| ||||||| ||||| |||||||||||| |||| || |||||||||||| ||||    
T  38938466 tatcgaattggcttggttttgttatggtgtttaatggcaatttatatacacatgctaatcatttttgtgctcttagaggcttttcaaagaattctatgaa 38938367  T
Q  139 agcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttctt 238  Q
    ||| ||| |||||||||||||||| |||||||||  ||| |||||||||||||||| || |||||| |||||||| || |  ||| | |||| |||||||    
T  38938366 agcttttactattatttggatttctgtcttatttgttatttggaaagatcgcaacatgatgattttccaaaaccatatggaccatcttgaagctcttctt 38938267  T
Q  239 gaaagggtcaaactccaaacgttttggtggttgaaagctaact 281  Q
    |||||||| ||||| ||||| |||||| |||||||||| ||||    
T  38938266 gaaagggttaaacttcaaactttttggcggttgaaagcaaact 38938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 230 - 361
Target Start/End: Complemental strand, 30274532 - 30274400
Alignment:
Q  230 gttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggag-acaaaacccttta 328  Q
    ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| ||||||    
T  30274532 gttctacttgaaagagtcaaacttcaaacattttggtggttgaaagctaactacatcttgttcgttttttattattcttattggagaaaaaaatccttta 30274433  T
Q  329 ccttgtttaaatactattttgtaaagtctgttt 361  Q
    ||||||||| | ||| |||||||||||||||||    
T  30274432 ccttgtttacagactgttttgtaaagtctgttt 30274400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 358
Target Start/End: Original strand, 33937038 - 33937322
Alignment:
Q  72 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 171  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| ||  ||  || || |||| || |||||||||||||||| |||||    
T  33937038 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaa--ctacgacaggatttactgttatttggatttcggttttatt 33937135  T
Q  172 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 271  Q
        || ||||||||| | |||||||| |||||||| || ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  33937136 cgtcatttggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttg 33937235  T
Q  272 aaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 358  Q
    ||||| || |||||  |||||| |||| | ||| | ||||||||| |||| |||||| |||||||| | |||  ||||||| |||||    
T  33937236 aaagcgaattacatcatgttcgattttgactatccctattggagaaaaaatcctttagcttgtttacagactgctttgtaatgtctg 33937322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 358
Target Start/End: Complemental strand, 22298888 - 22298587
Alignment:
Q  57 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 156  Q
    ||||||||||| |  |||| |||||| | |||||||| |  || |||||||||||||||||||||||||| || |||  || ||  ||| || | |||||    
T  22298888 ttgttacggttttacatggtaatttacactcacatgctacccaattttgtgctcttggaggtttctcaaaaaactctaggacaggctttactgtcatttg 22298789  T
Q  157 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 256  Q
    |||||||||  ||||    ||||| |||||| | |||||||| ||||||||||| ||  ||| |||| | |||| ||| ||||||||||| |||||||||    
T  22298788 gatttcggttatattcgtcatatgaaaagattgaaacaggagaatttttcaaaatcactttgatcatcttgaagctctccttgaaagggttaaactccaa 22298689  T
Q  257 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtc 356  Q
    |||| ||||||||||||||| || |||||  |||| | |||| | ||| | ||||||||  |||| ||||||  ||||||| | ||| |||||||| |||    
T  22298688 acgtattggtggttgaaagcgaattacatcatgtttgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgttttgtaatgtc 22298589  T
Q  357 tg 358  Q
    ||    
T  22298588 tg 22298587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 358
Target Start/End: Complemental strand, 1258422 - 1258135
Alignment:
Q  72 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 171  Q
    |||| |||||| | |||||||| |  || |||||||||||||||||||| ||||| || |||  || |  |||| || |||||||||||||||| |||||    
T  1258422 atggtaatttacactcacatgctacccaattttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggatttcggttttatt 1258323  T
Q  172 tactatatggaaagatcgcaacaggaggattttt-caaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
        || ||||||||| | |||||||| |||||| || || ||  ||| |||| | |||| |||  |||||||||| |||||||||| || |||||||||    
T  1258322 cttcatttggaaagatagaaacaggagaattttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaatgtattggtggtt 1258223  T
Q  271 gaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 358  Q
    |||||| || |||||  || ||| |||| | ||| | ||||||||  |||| ||||||  ||||||| | |||  ||||||| |||||    
T  1258222 gaaagcgaattacatcatgctcgattttgactatccctattggaggaaaaatcctttagtttgtttacagactgctttgtaatgtctg 1258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 20007451 - 20007345
Alignment:
Q  80 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 179  Q
    |||||| | ||| ||||||| ||||||| ||||||||| |||||||| |||||   || | |||| |||||||||||||||||||||||||||  ||| |    
T  20007451 ttatatgctcattcaaatcaattttgtgttcttggagggttctcaaaaaattcaaggataacattctctattatttggatttcggtcttatttgttatct 20007352  T
Q  180 ggaaaga 186  Q
    |||||||    
T  20007351 ggaaaga 20007345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 23 - 367
Target Start/End: Original strand, 9403337 - 9403681
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9403337 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgcacttggaggtttct 9403436  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  9403437 caaagcattctttgaaagcattttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 9403536  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  9403537 tctggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 9403636  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttggg 367  Q
    ||||||||||||||| | |||||| ||||||||||||||||||||    
T  9403637 cctttaccttgtttacagactattgtgtaaagtctgttttttggg 9403681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 37075802 - 37076145
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||| ||| ||||    
T  37075802 cggttatggcttatgctatcggattggttaggtattgttacggttctcaatgacaatttatattcacatgctaatcagttttgtgcacttgaaggattct 37075901  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||| ||||| || || | ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  37075902 caaagcattctgtgcaaactttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 37076001  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  37076002 tctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 37076101  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  37076102 cctttaccttgtttacagactattgtgtaaagtctgttttttgg 37076145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 23 - 366
Target Start/End: Complemental strand, 34981857 - 34981514
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| || |||||||||||||| |||||||||||||| |||||||| ||||    
T  34981857 cggttatggcttatgctatcagattggttaggttttgtcacggcgctcaatggaaacttatattcacatgctaatcagttttgtgcacttggaggattct 34981758  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  34981757 caaagcattctatgcaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttca 34981658  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  34981657 tatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 34981558  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    || ||| |||||||| | |||||| |||||||||||||||||||    
T  34981557 ccattatcttgtttacagactattgtgtaaagtctgttttttgg 34981514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 361
Target Start/End: Complemental strand, 12121593 - 12121258
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | ||||| ||||||||||| ||||| || ||||||||||    
T  12121593 ttatggcttatgctatcggattggttaggtttggttacggttctcaatgacaatttatatactcatgctaatcagttttgcgctctaggcggtttctcaa 12121494  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| ||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  12121493 agaattctatgaaagcttttactattatttggatctcagccttatatactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 12121394  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | || |||    
T  12121393 ggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcct 12121294  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    |||||||||||| | ||| | |||||||||||||||    
T  12121293 ttaccttgtttacagactgtgttgtaaagtctgttt 12121258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 26 - 359
Target Start/End: Complemental strand, 24819704 - 24819371
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  24819704 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 24819605  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| || || |||    
T  24819604 agaattctatgaaagcttttactatcatttggatttcggtcttatatactatatggaaagttcgcaacaggaggattttccaaaaccaaagtgctctttt 24819505  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||    
T  24819504 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcct 24819405  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgt 359  Q
    |||||||||||| | ||| |||||||||||||||    
T  24819404 ttaccttgtttacagactgttttgtaaagtctgt 24819371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 358
Target Start/End: Original strand, 36575597 - 36575929
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  36575597 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 36575696  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| ||||||||| ||||||||||||| || |||||||||| || || |||    
T  36575697 agaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagattgcaacaggaggatattccaaaaccaaagtgctctttt 36575796  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||    
T  36575797 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcct 36575896  T
Q  326 ttaccttgtttaaatactattttgtaaagtctg 358  Q
    |||||||||||| | ||| ||||||||||||||    
T  36575897 ttaccttgtttacagactgttttgtaaagtctg 36575929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 183 - 373
Target Start/End: Original strand, 3483065 - 3483256
Alignment:
Q  183 aagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 282  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3483065 aagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 3483164  T
Q  283 cattttgttcg-ttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttttgggcctttg 373  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||    
T  3483165 catattgttcgattttttattattcttattggagacaaaaccctttaccttgtttacagactattttgtaaagtctgttttttggacctttg 3483256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 25 - 362
Target Start/End: Original strand, 40891978 - 40892315
Alignment:
Q  25 gttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctca 124  Q
    |||||||||| || ||||  ||||| | ||||||||||| ||  |  |||||||||||||| ||||||  ||||||||||| |||||  |||  ||||||    
T  40891978 gttatggcttttgatatcaaattggcttggttttgttacagtgtttcatggcaatttatatacacatgataatcagttttgcgctctaagagacttctca 40892077  T
Q  125 aagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatt 224  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||     
T  40892078 aagaattctatgaaagcttttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatc 40892177  T
Q  225 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 324  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| | ||| | | |||||||||||| ||    
T  40892178 tggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaaaatcc 40892277  T
Q  325 tttaccttgtttaaatactattttgtaaagtctgtttt 362  Q
     |||  ||||||| | ||| | ||||||||||||||||    
T  40892278 cttatgttgtttacagactgtcttgtaaagtctgtttt 40892315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 26 - 279
Target Start/End: Complemental strand, 586791 - 586538
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||| || ||||| ||||| | ||||||||||||||  |  ||| |||||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  586791 ttatggcttctgatatcgaattggcttggttttgttacggtgtttcatgacaatttatatacacatgctaatcagttttgcgctcttggaggcttctcaa 586692  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||| | ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||||||||| | | ||    
T  586691 agaattatatgaaagctttcactattatttggatttcggtcttatttactatatggaaagatcgaaaccgaaggatattccaaaaccaaattgattaatt 586592  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 279  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  586591 ggaagttcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaa 586538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 135 - 362
Target Start/End: Complemental strand, 21608136 - 21607909
Alignment:
Q  135 tgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttct 234  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||   ||||||||| ||||||||||||| ||||||||||| |||    
T  21608136 tgaaagcttttactattatttggatttcggtcttatttattatatgaaaagatcgcaaattgaggattttccaaaaccaaattgatcatttggaagctct 21608037  T
Q  235 tcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgt 334  Q
    | |||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| ||||| | | |||||||||||| ||||||  ||||    
T  21608036 ttttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgattatcccttttggagacaaaaacctttatgttgt 21607937  T
Q  335 ttaaatactattttgtaaagtctgtttt 362  Q
    ||| |  || | ||||||||||||||||    
T  21607936 ttacagtctgtcttgtaaagtctgtttt 21607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 138 - 359
Target Start/End: Complemental strand, 31253113 - 31252892
Alignment:
Q  138 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 237  Q
    |||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||  | || |||||| |||||  |    
T  31253113 aagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacaggaggatattccaaaaccaaagcgctcttttggaggttctatt 31253014  T
Q  238 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 337  Q
    |||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||   || | |||||||| ||||    
T  31253013 tgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgttttttattattcgtattggagaattaatcatttaccttattta 31252914  T
Q  338 aatactattttgtaaagtctgt 359  Q
     |  || |||||||||||||||    
T  31252913 caggctgttttgtaaagtctgt 31252892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 20705704 - 20706042
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  |||||| ||||| ||||||| |  ||||||||||||| |||||||| ||||    
T  20705704 cggttatggcttttgatatcgaattggtttggtattgttactgtgtttcatggcactttattttcacatactcatcagttttgtgcacttggagggttct 20705803  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    | ||||| |||  |  ||| ||| |||||||||||||||||||||||||   ||| ||||||||||| || |||||||||||||| ||||||  ||  ||    
T  20705804 ccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggaggatttttcagaaccaacatgaaca 20705903  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | | |||| ||||  ||||||||| ||||| |  || | ||||||||||||||| || | |||  ||||   |||| | ||||| | |||||||||||||    
T  20705904 tctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagcaaatttcatcatgtttaattttgaatattccttttggagacaaaac 20706003  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    ||||||| ||||||| | ||| | |||||| ||||||||    
T  20706004 cctttacattgtttacagactgtcttgtaatgtctgttt 20706042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 23 - 361
Target Start/End: Original strand, 20873748 - 20874086
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||| || ||||| ||||||| ||| ||||||| ||  |  |||||| ||||| ||||||| |  ||||||||||||| |||||||| ||||    
T  20873748 cggttatggcttttgatatcgaattggtttggtattgttactgtgtttcatggcactttattttcacatactcatcagttttgtgcacttggagggttct 20873847  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    | ||||| |||  |  ||| ||| |||||||||||||||||||||||||   ||| ||||||||||| || |||||||||||||| ||||||  ||  ||    
T  20873848 ccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaataggaggatttttcagaaccaacatgaaca 20873947  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | | |||| ||||  ||||||||| ||||| |  || | ||||||||||||||| || | |||  ||||   |||| | ||||| | |||||||||||||    
T  20873948 tctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagcaaatttcatcatgtttaattttgaatattccttttggagacaaaac 20874047  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    ||||||| ||||||| | ||| | |||||| ||||||||    
T  20874048 cctttacattgtttacagactgtcttgtaatgtctgttt 20874086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 322
Target Start/End: Complemental strand, 27278612 - 27278313
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||  || ||| | ||||||| ||| |||||||| || |  ||||||||||| || ||||||| ||||||||||||||||||| ||||||||    
T  27278612 cggttatggctcttgatattgcattggtttggtattgttacgattttacatggcaatttaaatacacatgctaatcagttttgtgctcttgcaggtttct 27278513  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||| |||||||   | ||| ||| ||||||| ||| ||| ||||||||||  ||||| ||||||||||||||| |  |||||  |||| || |||| |||    
T  27278512 caaggaattctagaacagcttttactattatatgggttttggtcttatttgttatattgaaagatcgcaacagtataattttctaaaatcacattgatca 27278413  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | | |||| ||||||| ||||||| ||| | ||| ||| ||||||||||||||| |||| |||  |||| | |||| | ||| ||| || ||||||||||    
T  27278412 tcttgaagctcttcttaaaagggttaaatttcaatcgtattggtggttgaaagcaaacttcatcatgtttgcttttaactatcctttttagagacaaaac 27278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 57 - 358
Target Start/End: Complemental strand, 27868876 - 27868585
Alignment:
Q  57 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 156  Q
    |||||||||||||  |||| |||||| |||| ||||| ||||| ||||||||| ||||||||||||||||||| |||  || |   ||| ||||||||||    
T  27868876 ttgttacggttctacatggtaatttacattctcatgctaatcaattttgtgcttttggaggtttctcaaagaactctaggacaagttttactattatttg 27868777  T
Q  157 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 256  Q
    ||||| |   | ||||       ||||||| || |||||||  ||||||||  | || |||| |||| | |||| ||||||||||||| | ||| |||||    
T  27868776 gattttg---tcattt-------ggaaagaccgaaacaggataatttttcagcatcacattgatcatctagaagctcttcttgaaaggattaaaatccaa 27868687  T
Q  257 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtc 356  Q
    |||| ||||||||||||||| || |||||  |||||| |||| | ||||| | ||||||  ||||| |||||  ||||||| | ||| |||||||| |||    
T  27868686 acgtattggtggttgaaagcgaattacatcatgttcgattttgactattccttttggaggaaaaactctttagtttgtttagagactgttttgtaatgtc 27868587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 286
Target Start/End: Original strand, 18815654 - 18815868
Alignment:
Q  72 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 171  Q
    ||||||||||| || | ||| ||||||||||||||||||||||||| |||||||| ||||| | || |   || ||||||||||||||||||||||||||    
T  18815654 atggcaatttaaatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcatggacattcttatctattatttggatttcggtcttatt 18815753  T
Q  172 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca-tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |  ||| | |||||| || ||||| || |||||| | || ||  ||  |||  ||  |||  |||||||||| ||| ||||||||||| | |||||||||    
T  18815754 tgttatctagaaagaccgtaacagtagaatttttaataatcattttcatcagcttacaag-acttcttgaaaaggttaaactccaaacatattggtggtt 18815852  T
Q  271 gaaagctaactacatt 286  Q
    |||||| |||||||||    
T  18815853 gaaagcgaactacatt 18815868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 27990212 - 27990312
Alignment:
Q  72 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 171  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||| |||||||| |||||   || | | || ||||||||||||||||||||||||||    
T  27990212 atggcgatttatatactcattcaaatcagttttgtgctcttggagggttctcaaaaaattcaaggacaaccttctctattatttggatttcggtcttatt 27990311  T
Q  172 t 172  Q
    |    
T  27990312 t 27990312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 303
Target Start/End: Original strand, 45649421 - 45649653
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  ||||||||||||| || ||||    
T  45649421 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatttggatttctgttttat 45649520  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || || |||||| | ||| |||| |||||||| || ||   || |||| | | || ||||||||||||| | ||||| |||| |||||||||| |    
T  45649521 tcgtcatttgaaaagatagaaactggagaatttttcagaatcactctgatcatcttggagctcttcttgaaaggattaaacttcaaatgttttggtggct 45649620  T
Q  271 gaaagctaactacattttgttcgttttttatta 303  Q
    |||||| || ||||||||||||| |||| ||||    
T  45649621 gaaagcgaattacattttgttcgattttgatta 45649653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 298
Target Start/End: Complemental strand, 47553251 - 47553024
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||| || || |||  || ||  ||| |  |||| |||||||| || ||||    
T  47553251 aatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaagtctaggacaggttttacagttatctggatttcagttttat 47553152  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || ||||||||| | |||||||| |||||||| || ||  ||| |||| | || | ||| ||||||||| | ||||| ||||||||||||||| |    
T  47553151 tcgtcatttggaaagatagaaacaggagaatttttcagaatcattttgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggct 47553052  T
Q  271 gaaagctaactacattttgttcgttttt 298  Q
    |||||| || ||||||||||||| ||||    
T  47553051 gaaagcgaattacattttgttcgatttt 47553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 8457467 - 8457559
Alignment:
Q  94 aaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 186  Q
    |||||||||||||||||||||||| |||||||| |||||   || ||  || | |||||||||||||||||||||||||  ||| ||||||||    
T  8457467 aaatcagttttgtgctcttggagggttctcaaaaaattcaaggacagtcttctttattatttggatttcggtcttatttgttatctggaaaga 8457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 22866164 - 22866228
Alignment:
Q  227 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtt 291  Q
    |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || |||||| ||||    
T  22866164 gaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattatgtt 22866228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 5196519 - 5196380
Alignment:
Q  147 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 246  Q
    |||||||||||||| ||| |||||||  ||| || ||||||| ||||||||| |||||||| ||  | |||| |||  | | ||  ||| | |||| |||    
T  5196519 ctattatttggattgcggccttatttgttatttgaaaagatcacaacaggagaatttttcacaattagattgatcagcttgcagcgcttgtagaaaaggt 5196420  T
Q  247 caaactccaaacgttttggtggttgaaagctaactacatt 286  Q
     |||||| |||||| |||||||||||||||  ||||||||    
T  5196419 taaactctaaacgtattggtggttgaaagcgcactacatt 5196380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 10462349 - 10462692
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  10462349 cggttatggcttatgatatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaaccagatttgtgctcttggaggtttct 10462448  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  10462449 caaagaattctgtgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggattttccaaaaccaaattgttca 10462548  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10462549 tttggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggagacaaaac 10462648  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    ||||||||||||||| | | ||||||||||||||||||||||||    
T  10462649 cctttaccttgtttacagaatattttgtaaagtctgttttttgg 10462692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 24 - 367
Target Start/End: Original strand, 5825182 - 5825525
Alignment:
Q  24 ggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  5825182 ggttatggcttatgctatcggattggttaggttttgttacggttcttaatggcaatttatattcacatgctaatcagttttgtgcacttggcggtttctc 5825281  T
Q  124 aaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcat 223  Q
    |||| ||| | || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5825282 aaagcattatgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacaggaggatttttcaaaaccaaattgttcat 5825381  T
Q  224 ttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacc 323  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |    
T  5825382 ctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggaggcaaaatc 5825481  T
Q  324 ctttaccttgtttaaatactattttgtaaagtctgttttttggg 367  Q
    |||||| ||||||| | |||||| ||||||||||||||||||||    
T  5825482 ctttacattgtttacaaactattgtgtaaagtctgttttttggg 5825525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 6678788 - 6679131
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||  |||    
T  6678788 cggttatggcttatgctatcggattggttaggtattgttacggttctcaatgacaatttttattcacatgctaatcagttttgtgcacttggaggagtct 6678887  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||| | ||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  6678888 caaagcactctgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 6678987  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||     
T  6678988 tctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgttttttattattcttattggaggcaaaat 6679087  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  6679088 cctttaccttgtttacagactattgtgtaaagtctgttttttgg 6679131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 27891705 - 27891450
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||  || ||||| ||||||| ||| ||||||||||  |  |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||    
T  27891705 ttatggctcttgatatcgaattggtttggtattgttacggtgtttcatggcaatatattttcacatgctaatcagttttgtgctcttggagggttctcaa 27891606  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||| |||  || | | ||| ||||||| ||||||| ||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||  ||| |    
T  27891605 agaagtctaggacatcttttactattatatggatttaggtcttatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatct 27891506  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 281  Q
      ||| |||| |||||||||| ||||| ||||| | ||||||||||||||| ||||    
T  27891505 caaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaact 27891450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 11265971 - 11265782
Alignment:
Q  87 cacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 186  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||  ||| ||||||||    
T  11265971 cacatgctaatcagttttgtgctcttggaggtttctcaaggaagtctatgaaagcttttactattatttggatttcggtcttatttgttatttggaaaga 11265872  T
Q  187 tcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 276  Q
    ||| |||||||||||||||||  | ||  | | |||| | |||| ||| ||||||||||| ||||| ||||| | |||||||||||||||    
T  11265871 tcgtaacaggaggatttttcagcatcatttggatcatcttgaagctctccttgaaagggttaaacttcaaacttattggtggttgaaagc 11265782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 57 - 352
Target Start/End: Original strand, 31962918 - 31963213
Alignment:
Q  57 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 156  Q
    |||||||| ||||  |||| |||||| |||| ||||| ||||| ||||||| ||||||||||||||||||||| |||  || ||  ||| |||||||||     
T  31962918 ttgttacgattctacatggtaatttacattctcatgctaatcaattttgtggtcttggaggtttctcaaagaactctaggacaggttttactattatttc 31963017  T
Q  157 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 256  Q
    |||||||||  |||||   || |||||||| || |||||||| ||||||||  | || |||| |||| | |||| ||||||||||||||| ||| |||||    
T  31963018 gatttcggtactatttgtcatttggaaagaccgaaacaggagaatttttcagcatcacattgatcatctagaagctcttcttgaaagggttaaaatccaa 31963117  T
Q  257 acgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 352  Q
    |||| ||||||||||||||| || |||||  |||| | |||| | ||| | | |||||   |||||||||||  ||||||||| ||| ||||||||    
T  31963118 acgtattggtggttgaaagcgaattacatcatgtttgattttgactatcccttttggacgaaaaaccctttagtttgtttaaagactgttttgtaa 31963213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 303
Target Start/End: Complemental strand, 38931701 - 38931499
Alignment:
Q  101 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 200  Q
    |||||||||||||||||||||||||| || |||  || ||  ||| |  |||||||||||||||| ||||| |  || ||||||||| | |||||||| |    
T  38931701 ttttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggatttcggttttattcatcatttggaaagatagaaacaggagaa 38931602  T
Q  201 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgtttttta 300  Q
    ||||||| || ||  ||| |||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||| |||| |    
T  38931601 tttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagcgaattacattttgttcgattttga 38931502  T
Q  301 tta 303  Q
    |||    
T  38931501 tta 38931499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 3998600 - 3998524
Alignment:
Q  287 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttttt 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||    
T  3998600 ttgttcgttttttattattcttattggagacaaaaccctttaccttgtttacagactgttttgtagagtctgttttt 3998524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 281
Target Start/End: Complemental strand, 29150281 - 29150057
Alignment:
Q  57 ttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttg 156  Q
    ||||||||||| |  ||| ||||||| || | ||||| ||||||||||||||||| ||  | |||||||||| ||||  || ||| ||| ||||||||||    
T  29150281 ttgttacggttttacatgacaatttaaatactcatgctaatcagttttgtgctctcggtagcttctcaaagagttctacgatagcgtttactattatttg 29150182  T
Q  157 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 256  Q
    ||||| | |||||| |  ||||||||||||||| || || |  ||||| ||||| ||  ||| |||| | |||| |||| |||||||||| ||||| |||    
T  29150181 gattttgatcttatatgttatatggaaagatcgaaagagaaaaattttccaaaatcactttgatcatcttgaagctcttattgaaagggttaaacttcaa 29150082  T
Q  257 acgttttggtggttgaaagctaact 281  Q
    |||| || |||||||||||| ||||    
T  29150081 acgtattcgtggttgaaagcaaact 29150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 291
Target Start/End: Complemental strand, 8895316 - 8895126
Alignment:
Q  101 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 200  Q
    |||||||||||||||||||||||||| ||||||  || ||  ||| |  ||||||||||||| || |||||    || ||||||||| | |||||||| |    
T  8895316 ttttgtgctcttggaggtttctcaaaaaattctaggacaggttttacagttatttggatttcagttttattcgtcatttggaaagatagaaacaggagaa 8895217  T
Q  201 tttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgtt 291  Q
    ||||||| || ||  | | |||| |  ||| ||||||||||||||| ||||| |||||| ||| |||||||||||| || |||||||||||    
T  8895216 tttttcagaatcacttagatcatcttaaagctcttcttgaaagggttaaacttcaaacggtttagtggttgaaagcgaattacattttgtt 8895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 29322599 - 29322528
Alignment:
Q  227 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 298  Q
    |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || || ||| |||||| ||||    
T  29322599 gaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattatattatgttcgatttt 29322528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 23 - 363
Target Start/End: Original strand, 17154019 - 17154360
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  17154019 cggttatggcttatgctattggattggttaggttttgttacggttctcaatgacaatttatattcacatgcaaatcagttttgcgctcttggaggtttct 17154118  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  17154119 caaagaattctttgaaagcatttactattatttggatttcagtcttatttactatatggaaagattgcaacaggaggattttccaaaaccaaattgttca 17154218  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggag-acaaaa 321  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||||    
T  17154219 tttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacgtattgttcgttttttattattcttattggagaaaaaaa 17154318  T
Q  322 ccctttaccttgtttaaatactattttgtaaagtctgttttt 363  Q
    |||||||||||||||| | ||| |||||||||||||||||||    
T  17154319 ccctttaccttgtttacagactgttttgtaaagtctgttttt 17154360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 53152297 - 53152640
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||    
T  53152297 cggttatggcttatgctatcggattggttaggtattgttacggttctcaatgacaatttatattcacatgctaatcagttttgtgcacttggaggattct 53152396  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  53152397 caaagcattctgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttca 53152496  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  53152497 tctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacatattgttcgtttttgattattcttattggaggcaaaac 53152596  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  53152597 cctttaccttgtttacagactattgtgtaaagtctgttttttgg 53152640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 362
Target Start/End: Original strand, 23571833 - 23572172
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||| |||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||    
T  23571833 cggttatggcttttgctatcggattggttaggttttgctacggtttttaatggcaatttatatacacatgctaatcagttttgtgcttttggaggcttct 23571932  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23571933 caaagaattctatgaaagcatttactattatttggatttcggtattattttctatatggaaagatcgcaacaggaggattttccaaaaccaaattgttca 23572032  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||    
T  23572033 tttggaagttctaattgaaagggtcaaacttcaaacgttttggtggttgaaagctaactgcatcttgttcgttttttattatccttattggagacaaaac 23572132  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgtttt 362  Q
    || |||  ||||||| | ||| ||||||||||||| ||||    
T  23572133 cccttatgttgtttacagactgttttgtaaagtctctttt 23572172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 333
Target Start/End: Complemental strand, 3514691 - 3514384
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| |||||||||||||    
T  3514691 ttatggcttatgctatccgattggttaggttttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctctaggaggtttctcaa 3514592  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||    
T  3514591 agaattctatgaaagcttttactattatttggatctcggtcttatatactatttggaaagatcgcaacaggaggattttccaaaaccaaattgttctttt 3514492  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| | || |||    
T  3514491 ggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgttttttattactcttattgaagaaataatcct 3514392  T
Q  326 ttaccttg 333  Q
     |||||||    
T  3514391 ataccttg 3514384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 138 - 367
Target Start/End: Complemental strand, 32945786 - 32945557
Alignment:
Q  138 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 237  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  32945786 aagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttct 32945687  T
Q  238 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 337  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32945686 tgaaagggtcaaactccaaacgttttggtggttgaaagttaactacatattgttcgttttttattattcttattggagacaaaaccttttaccttgttta 32945587  T
Q  338 aatactattttgtaaagtctgttttttggg 367  Q
     | |||||| ||||||||||||||||||||    
T  32945586 cagactattgtgtaaagtctgttttttggg 32945557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 26 - 358
Target Start/End: Complemental strand, 9819067 - 9818733
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  9819067 ttatggcttatgctatcggattggttaggttttgttatggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 9818968  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||| | ||||||| ||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || || |||    
T  9818967 agaattttatgaaagcttttactatcatttggatttcggtcttatatactatatgggaagatcgcaacaggaggatttttcaaaaccaaagtgctctttt 9818868  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||   || | |    
T  9818867 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgttttttattattcgtattggagaattaatcat 9818768  T
Q  326 ttaccttg--tttaaatactattttgtaaagtctg 358  Q
    ||||||||  |||| | ||| ||||||||||||||    
T  9818767 ttaccttgtttttacagactgttttgtaaagtctg 9818733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 26 - 362
Target Start/End: Complemental strand, 48547561 - 48547225
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggt-tctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctca 124  Q
    ||||||||  || ||||| ||||||| ||| |||||||||| |||||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||    
T  48547561 ttatggctcttgatatcgaattggtttggtattgttacggtgtctcaa-ggcaatttaatttcacatgctaatcagttttgtgctcttggaggtttctca 48547463  T
Q  125 aagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatt 224  Q
    ||||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||  |||     
T  48547462 aagaagtctaggacaacttttactattatatggatttcggtcttatttgttatttggaaagatcgcaacaggaggatttttcagaaccaaattgaacatc 48547363  T
Q  225 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 324  Q
    | |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| |||| |||   ||||| |||| ||||| ||| |||||||||||| ||    
T  48547362 tcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcatcacgttcgcttttgattatcctttttggagacaaaatcc 48547263  T
Q  325 tttaccttgtttaaatactattttgtaaagtctgtttt 362  Q
     |||| ||||||| | ||| |  ||||| |||||||||    
T  48547262 gttacattgtttacagactgtcatgtaatgtctgtttt 48547225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 363
Target Start/End: Complemental strand, 42462730 - 42462390
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||| || ||||  ||||  | |||||||||||| |  |  |||||||||||||| ||||||| ||||||||||||||||||||||| || |    
T  42462730 cggttatggcttttgatatcaaattgacttggttttgttacgatgtttcatggcaatttatatacacatgctaatcagttttgtgctcttggaggctttt 42462631  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||||||| | ||||||  ||| ||||||||||||||||||||||||||  ||| || ||||||||||||| ||||||||| |||||||| |    |||    
T  42462630 caaagaattatatgaaaggttttactattatttggatttcggtcttatttgttatttgaaaagatcgcaacatgaggattttccaaaaccatacgaatca 42462531  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | | |||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||| |||  |||||| |||| ||||| |   ||||||||||||     
T  42462530 tcttgaagctcttcttgaaagggttaaacttcaaactttttggtggttgaaagctaacttcatcatgttcgcttttgattatcccatttggagacaaaat 42462431  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttt 363  Q
    |  |||  ||||||| | ||| | |||||| ||||||||||    
T  42462430 ctcttatgttgtttatagactgtcttgtaatgtctgttttt 42462390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 44879790 - 44879665
Alignment:
Q  238 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 337  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  44879790 tgaaagggtcaaacttcaaacgttttggtggttgaaaactaactacatattgttcgtttttgattattcttattggagacaaaatcctttaccttgttta 44879691  T
Q  338 aatactattttgtaaagtctgttttt 363  Q
     ||||| |||||||||||||||||||    
T  44879690 catactgttttgtaaagtctgttttt 44879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 161 - 359
Target Start/End: Complemental strand, 9246901 - 9246703
Alignment:
Q  161 tcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgt 260  Q
    |||||||||| |||||| | |||||||| |||||||||||| || |||||||||| ||||| |||||| ||||| |||||||| |||||||| ||||| |    
T  9246901 tcggtcttatatactatttagaaagatcacaacaggaggatattccaaaaccaaagtgttcttttggaggttctacttgaaagagtcaaacttcaaacat 9246802  T
Q  261 tttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgt 359  Q
     |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || ||||||||||||||| |  || |||||||||||||||    
T  9246801 attggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgtttacaggctgttttgtaaagtctgt 9246703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 72 - 274
Target Start/End: Complemental strand, 30737449 - 30737247
Alignment:
Q  72 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 171  Q
    ||||| ||||| || ||||||| |||||||||||| |||||||||||||||||||||| |||  || | | ||| ||||||| |||||||||||||||||    
T  30737449 atggcgatttacatacacatgcgaatcagttttgtactcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatt 30737350  T
Q  172 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 271  Q
    |  |||||| ||||||||||| ||||| ||||| ||||| || |||| |||| | |||| ||||||||||||||| ||||| ||||||| ||||||||||    
T  30737349 tgttatatgaaaagatcgcaagaggagaattttccaaaatcacattgatcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttg 30737250  T
Q  272 aaa 274  Q
    |||    
T  30737249 aaa 30737247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 157 - 285
Target Start/End: Complemental strand, 8542381 - 8542253
Alignment:
Q  157 gatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 256  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| | |    
T  8542381 gattttggtcttatttactatattgaaagatcgtaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcga 8542282  T
Q  257 acgttttggtggttgaaagctaactacat 285  Q
    |||||||||||||||||||||||||||||    
T  8542281 acgttttggtggttgaaagctaactacat 8542253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 53 - 360
Target Start/End: Complemental strand, 23603243 - 23602936
Alignment:
Q  53 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 152  Q
    ||||||||||||||  |  |||||||||||||| | ||||| | ||||||||||||||||||||| || |||||||||||| |||||||  | |||||||    
T  23603243 ggttttgttacggtgtttcatggcaatttatatcctcatgctattcagttttgtgctcttggaggattttcaaagaattctatgaaagctctgtctatta 23603144  T
Q  153 tttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 252  Q
    ||||||||||| | ||||||  ||| |||||||||||||||  || |||||| |||||| | || | |||| | |||| ||||||||||| ||| |||||    
T  23603143 tttggatttcgattttatttgttatttggaaagatcgcaacttgaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaact 23603044  T
Q  253 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaa 352  Q
     ||||| ||||||||| ||||||| |||| |||    |||  |||| ||||| | | |||||||||||| ||||||  ||||||| | ||| || |||||    
T  23603043 tcaaaccttttggtggatgaaagcaaactccatcaccttcagttttgattatcccttttggagacaaaatcctttatgttgtttacagactgttatgtaa 23602944  T
Q  353 agtctgtt 360  Q
     |||||||    
T  23602943 tgtctgtt 23602936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 42459503 - 42459807
Alignment:
Q  22 acggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttc 121  Q
    ||||||||||||  || ||||| | ||| | ||| ||||||||||| |  |||| |||||| |||| ||||| ||||||||||||||||| || || |||    
T  42459503 acggttatggctcttggtatcgcagtggcttggtattgttacggttttacatggtaatttacattctcatgctaatcagttttgtgctctcggtggcttc 42459602  T
Q  122 tcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttc 221  Q
    |||| || || | ||  ||| ||| |||||||||||||||||||||||| |  ||||||||||||||||||||||| || ||||||||| ||  ||| ||    
T  42459603 tcaaggagttatatgttagcgtttactattatttggatttcggtcttatatgttatatggaaagatcgcaacagga-gaattttcaaaatcattttgatc 42459701  T
Q  222 atttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 321  Q
    || | |||| |||| | | |||||| ||||| ||||||| ||||||||||||||| ||||  ||   |||||||||| | | | ||| ||||||||||||    
T  42459702 atcttgaagctcttatggtaagggttaaacttcaaacgtattggtggttgaaagcaaactttatcacgttcgtttttgactgtcctttttggagacaaaa 42459801  T
Q  322 cccttt 327  Q
     |||||    
T  42459802 tccttt 42459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 71 - 315
Target Start/End: Complemental strand, 10754025 - 10753781
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||| ||||||||||    || ||||| |||||||||||||| || || || ||| ||| ||  ||| ||||||||||||||||||| ||||    
T  10754025 aatggtaatttacattcacatgcttcccaattttgcgctcttggaggtttttcgaaaaaatctgtgacaggttttactattatttggatttcggttttat 10753926  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    ||   |||||||| ||| | ||||| || ||||||||  | ||| ||| |||  | |||||||||||||||||||| |||||||| ||||||||||||||    
T  10753925 ttgtcatatggaaggatagaaacagaagaatttttcagcaacaatttgatcagcttgaagttcttcttgaaagggttaaactccagacgttttggtggtt 10753826  T
Q  271 gaaagctaactacattttgttcgttttttattattcttattggag 315  Q
    |||||| || ||||| ||||||| |||| | ||| ||||||||||    
T  10753825 gaaagcgaattacatcttgttcgattttgactatccttattggag 10753781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 327
Target Start/End: Complemental strand, 8595237 - 8594963
Alignment:
Q  53 ggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctatta 152  Q
    ||||||||||||||  |  ||| ||||||| || | ||||| || || |||||||| |||||| |||| ||||||| ||||  |||||| || ||||||     
T  8595237 ggttttgttacggtgtttcatgtcaatttacatacccatgctaaccaattttgtgcccttggatgtttttcaaagagttctacgaaagctttgtctattg 8595138  T
Q  153 tttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaact 252  Q
    ||||||||||||| ||||||  ||| |||||||||||||| | || |||||| |||||||| || | | || | |||| ||||||||||| ||| |||||    
T  8595137 tttggatttcggttttatttgttatttggaaagatcgcaatatgaagattttccaaaaccatatgggttatcttgaagctcttcttgaaaaggttaaact 8595038  T
Q  253 ccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaacccttt 327  Q
     ||||| ||||||||| |||||||  ||| ||||  ||||  |||| ||||| | | |||||||||||| |||||    
T  8595037 tcaaaccttttggtggatgaaagcacacttcattacgttcaattttgattatcccttttggagacaaaatccttt 8594963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 358
Target Start/End: Original strand, 39633092 - 39633379
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||| ||||||||||   | | |||||||||||||| ||||| || || || |||  || ||  ||| ||||||||||||||||  | ||||    
T  39633092 aatggtaatttacattcacatgcttcttaattttgtgctcttgggggtttttcgaaaaactctaggacaggttttactattatttggatttcaattttat 39633191  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || ||||||||| | ||||| || ||||||||  | ||  ||| |||| | |||| ||| ||||||||||| |||||||||||||||||||||||    
T  39633192 tcgtcatttggaaagatagaaacagcagaatttttcagcatcactttgatcatcttgaagctctacttgaaagggttaaactccaaacgttttggtggtt 39633291  T
Q  271 gaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctg 358  Q
    |||||| || |||||  |||||| |||| | ||| | |||||||| ||||| ||||||| ||||||| | |||  ||||||| |||||    
T  39633292 gaaagcgaattacatcatgttcgattttgactatccctattggaggcaaaatcctttactttgtttacaaactgctttgtaatgtctg 39633379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 298
Target Start/End: Complemental strand, 16663938 - 16663711
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| |  |||  || ||  ||| |  |||| |||||||| || ||||    
T  16663938 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggatttcagttttat 16663839  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || ||||||||| | ||||| || |||||||| || ||| ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  16663838 tcgtcatttggaaagatagaaacagaagaatttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 16663739  T
Q  271 gaaagctaactacattttgttcgttttt 298  Q
    |||||| || |||||| |||||| ||||    
T  16663738 gaaagcgaattacattatgttcgatttt 16663711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 298
Target Start/End: Complemental strand, 52196249 - 52196022
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  52196249 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatctggatttctgttttat 52196150  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || ||||||||| | ||||| || |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  52196149 tcgtcatttggaaagatagaaacagaagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 52196050  T
Q  271 gaaagctaactacattttgttcgttttt 298  Q
    |||||| || |||||| |||||| ||||    
T  52196049 gaaagcaaattacattatgttcgatttt 52196022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 52962710 - 52962633
Alignment:
Q  239 gaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggaga 316  Q
    |||| ||| ||||||||| |||||||||||||||||    ||||||||||||||| |||| |||| ||| ||||||||    
T  52962710 gaaaaggttaaactccaatcgttttggtggttgaaattgtactacattttgttcgattttgattactctgattggaga 52962633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 28393405 - 28393365
Alignment:
Q  146 tctattatttggatttcggtcttatttactatatggaaaga 186  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  28393405 tctattatttggatttcggtcttatttgttatctggaaaga 28393365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 2959802 - 2960145
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| || |||||||||||||| |||||||||||||| |||||||| ||||    
T  2959802 cggttatggcttatgctatcagattggttaggttttgtcacggcgctcaatggaaacttatattcacatgctaatcagttttgtgcacttggaggattct 2959901  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  2959902 caaagcattctatgtaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacaggaggatttttcaaaacgaaattgttca 2960001  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||    
T  2960002 tatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagcgaactacatattgttcgtttttgattattcttattggaggcaaaac 2960101  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttttgg 366  Q
    || ||| |||||||| | |||||| |||||||||||||||||||    
T  2960102 ccattatcttgtttacaaactattgtgtaaagtctgttttttgg 2960145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 26 - 363
Target Start/End: Original strand, 26077941 - 26078278
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| ||||| |||||||    
T  26077941 ttatggcttatgttatccgattggttaggttttgttacggttctcaatggcaatttatatactcatgctaatcagttttgcgctctaggagggttctcaa 26078040  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| || ||||| ||||||| |||    
T  26078041 agaattctatgaaagctttttctattatttggatctcggtcttatatactatttggaaagatcgcaacaggaggattttccataaccatattgttctttt 26078140  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | || |||    
T  26078141 ggatgttcttcttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcct 26078240  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgttttt 363  Q
    ||| |||| ||| | ||| | |||||||||||||||||    
T  26078241 ttagcttgcttacagactgtgttgtaaagtctgttttt 26078278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 362
Target Start/End: Original strand, 31423430 - 31423766
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||  || ||||| ||||||| ||| ||||||||||  |  | | ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  31423430 ttatggctcttgatatcgaattggtttggtattgttacggtgtttcacgacaatttaaattcacatgctaatcagttttgtgctcttggaggtttctcaa 31423529  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| || ||||||||||||||||||||||| ||||||||||||| |||| |    
T  31423530 agaactctaggacaacttttactattatatggatttcggtcttatttgttatttgaaaagatcgcaacaggaggattttccaaaaccaaattgatcatct 31423629  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
     |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| |||| ||    ||||| |||| | ||| | | |||||||||||| ||     
T  31423630 cgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaacttcagcacgttcgcttttgactatcccttttggagacaaaatcca 31423729  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgtttt 362  Q
    |||  ||||||| | |||||  ||||| |||||||||    
T  31423730 ttatgttgtttacagactatcatgtaatgtctgtttt 31423766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 321
Target Start/End: Original strand, 26390518 - 26390751
Alignment:
Q  88 acatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagat 187  Q
    |||||| || ||||||||||| || || ||||||||||||||||||  || | | ||| |||||||||||| ||| |||||||||  |||||||||||||    
T  26390518 acatgctaaccagttttgtgccctcggtggtttctcaaagaattctaggacaacttttactattatttggacttctgtcttatttgttatatggaaagat 26390617  T
Q  188 cgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattt 287  Q
    ||||||||||| ||||| ||||| || | || |||| | || | ||||||||||||| | || || |||||||||||||||||||||||  |||  ||      
T  26390618 cgcaacaggagaattttccaaaatcacagtgatcatctagaggctcttcttgaaaggattaagcttcaaacgttttggtggttgaaagcacactttatca 26390717  T
Q  288 tgttcgttttttattattcttattggagacaaaa 321  Q
    |||||| |||| ||||||| | ||||||||||||    
T  26390718 tgttcgcttttgattattccttttggagacaaaa 26390751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 88 - 337
Target Start/End: Complemental strand, 29530118 - 29529870
Alignment:
Q  88 acatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagat 187  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||  || | | ||| ||||||| |||| ||| |||||||||  |||||||||||||    
T  29530118 acatgctaatcagttttgtgcccttgtaggtttctcaaagaattctaggacaac-tttcctattatctggacttctgtcttatttgttatatggaaagat 29530020  T
Q  188 cgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattt 287  Q
    || ||||| || ||||| ||||| || | || |||| | || | ||||||||||||||| || || ||||| ||||||||||||||||| ||||  ||      
T  29530019 cgtaacagaagaattttccaaaatcacagtgatcatctagatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaactttatca 29529920  T
Q  288 tgttcgttttttattattcttattggagacaaaaccctttaccttgttta 337  Q
    |||||| |||| ||||||| | || ||||||||| ||||||  |||||||    
T  29529919 tgttcgcttttgattattccttttagagacaaaatcctttaagttgttta 29529870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 298
Target Start/End: Original strand, 10801940 - 10802168
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctc-aaagaattctttgaaagcattttctattatttggatttcggtctta 169  Q
    ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||| ||| || |||  || ||  ||| |  |||| |||||||| || |||    
T  10801940 aatggtaatttatactctcatgctactcaatttagtgctcttggaggtttctctaaaaaagtctaggacaggttttacagttatctggatttcagtttta 10802039  T
Q  170 tttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 269  Q
    ||    || ||||||||| | |||||||| |||||||| || ||   || |||| | || | ||| ||||||||| | ||||| |||||||||||||||     
T  10802040 ttcgtcatttggaaagatagaaacaggagaatttttcagaatcattctgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggc 10802139  T
Q  270 tgaaagctaactacattttgttcgttttt 298  Q
    ||||||| || |||||| |||||| ||||    
T  10802140 tgaaagcgaattacattatgttcgatttt 10802168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 361
Target Start/End: Original strand, 18295611 - 18295946
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |  |||| ||||||||||| ||||| |||||||||||||    
T  18295611 ttatggcttatgctatcagattggttaggttttgttatggttctcaatggcaatttatatactaatgctaatcagttttgcgctctaggaggtttctcaa 18295710  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| ||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  18295711 agaattctatgaaagcttttactattatttggatctcggccttatatactatatggaaagatcgcaacaagaggattttccaaaaccaaattgttctttt 18295810  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| |||||  ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | || |||    
T  18295811 ggaggttctatttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacatcttgttcgtttttgattactcttattggagaaataatcct 18295910  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    |||||||||||| | ||| | |||||||||||||||    
T  18295911 ttaccttgtttacagactgtgttgtaaagtctgttt 18295946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 26 - 363
Target Start/End: Complemental strand, 2894244 - 2893907
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||| ||||| || || |||||||    
T  2894244 ttatggcttatgatttcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctcatcagttttgcgctctaggtgggttctcaa 2894145  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| || |||| ||| |||| ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||| |||| || || |||    
T  2894144 agaattctatgcaagcttttactatcatttggatttcggtcttatatactatatgaaaagaccgcaacaggaggattttccaaaatcaaagtgctctttt 2894045  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    |||  |||| |||||||| |||||||||||||| | |||||| ||||||||||| | ||| |||||||||||||||||||| |||||||||   || |||    
T  2894044 ggagtttctacttgaaagagtcaaactccaaacatattggtgtttgaaagctaatttcatcttgttcgttttttattattcgtattggagaattaatcct 2893945  T
Q  326 ttaccttgtttaaatactattttgtaaagtctgttttt 363  Q
    |||||||||||| | ||| |||||||||||||||||||    
T  2893944 ttaccttgtttacagactgttttgtaaagtctgttttt 2893907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 364
Target Start/End: Original strand, 28605099 - 28605440
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||  || ||||| ||||||| ||| ||||||| ||  |  |||||||| ||| |||||||||  |||||||||||||||||||||| ||||    
T  28605099 cggttatggctcttgatatcgaattggtttggtattgttactgtgtttcatggcaatctattttcacatgctcatcagttttgtgctcttggagggttct 28605198  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    | ||||| ||| ||| ||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| ||||||||||||||||| ||||||| ||  ||    
T  28605199 ccaagaagtctatgacagcttttactattatttggatttcggtcttatttgttatttggaaagatcgtaacaggaggatttttcagaaccaaaatgaaca 28605298  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | | |||| |||| |||||||||| ||||| || |  | |||| |||||||||| |||| | |  |||||| |||| | ||||||| |||||||||||||    
T  28605299 tcttgaagctctttttgaaagggttaaacttcagaattattggcggttgaaagcaaacttcgtcatgttcgcttttgactattctttttggagacaaaac 28605398  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgtttttt 364  Q
    ||||||| ||||||| | ||| |  ||||| |||||||||||    
T  28605399 cctttacattgtttacagactgtcatgtaatgtctgtttttt 28605440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 667222 - 667016
Alignment:
Q  74 ggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattta 173  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||     
T  667222 ggcaatttaaatacacatgctaatcagttttgtgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatttg 667123  T
Q  174 ctatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaa 273  Q
     |||||||||||||||||||||||||||||| |||||||| || | |||||| |||| |||||||||||| ||  |||| ||||  | ||||||||||||    
T  667122 ttatatggaaagatcgcaacaggaggattttccaaaaccatatggatcattttgaagctcttcttgaaagcgt-taacttcaaagatattggtggttgaa 667024  T
Q  274 agctaact 281  Q
    ||| ||||    
T  667023 agcaaact 667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 298
Target Start/End: Original strand, 5391777 - 5392004
Alignment:
Q  71 aatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| |||||||| || ||||| | ||| |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || ||||    
T  5391777 aatggtaatttatactctcatgctactcaattttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttat 5391876  T
Q  171 ttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggtt 270  Q
    |    || ||||||||| | |||||||| |||||||| || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |    
T  5391877 tcgtcatttggaaagatagaaacaggagaatttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggct 5391976  T
Q  271 gaaagctaactacattttgttcgttttt 298  Q
    |||||| || ||||||||||||| ||||    
T  5391977 gaaagcgaattacattttgttcgatttt 5392004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 286
Target Start/End: Complemental strand, 17227814 - 17227675
Alignment:
Q  147 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 246  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||||||  || ||||||||||| || |||| | |  | | || ||||||| |||||||    
T  17227814 ctattatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattagcttgcagctcttcttaaaagggt 17227715  T
Q  247 caaactccaaacgttttggtggttgaaagctaactacatt 286  Q
     ||||||||||||| ||||||||||||||| |||| ||||    
T  17227714 taaactccaaacgtattggtggttgaaagcgaacttcatt 17227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 7218686 - 7218820
Alignment:
Q  147 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 246  Q
    |||| |||||||||||||| |||| |  |||||||||||||||||| ||||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  7218686 ctatcatttggatttcggttttatatgttatatggaaagatcgcaataggagaatatttcaaaaacaggttgttcatcttgaagctcttttggaaaaggt 7218785  T
Q  247 caaactccaaacgttttggtggttgaaagctaact 281  Q
     ||||| ||| ||| ||||||||||||||| ||||    
T  7218786 taaacttcaagcgtattggtggttgaaagcaaact 7218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 285
Target Start/End: Original strand, 9759779 - 9759977
Alignment:
Q  87 cacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 186  Q
    ||||||| || || |||||| |||||||||||||||||||||| |||  ||  |  ||| ||  ||| |||||||||   ||||||  ||| ||||||||    
T  9759779 cacatgctaaccaattttgtcctcttggaggtttctcaaagaactctaggacgggctttactgctatatggatttcgacattatttgttatttggaaaga 9759878  T
Q  187 tcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 285  Q
    ||| |||||||| || |||||||| ||||||| |||| | || | ||||||||  ||||| ||||| |||| || ||||||||||||||| || |||||    
T  9759879 tcgtaacaggagaatatttcaaaatcaaattgatcatcttgatgctcttcttgggagggttaaacttcaaatgtattggtggttgaaagcgaattacat 9759977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 147 - 298
Target Start/End: Original strand, 14223505 - 14223656
Alignment:
Q  147 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 246  Q
    ||||||||||||||| |||||||| |  ||||||||| |||||||||| ||| ||||| | ||| ||  ||| |||| |||||| |||| | |||| |||    
T  14223505 ctattatttggattttggtcttatatgttatatggaatgatcgcaacaagagaattttccgaaatcactttgatcatctggaagctcttatggaaacggt 14223604  T
Q  247 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttt 298  Q
     ||||| ||||||| ||||||||| ||||| |||| |||   ||||||||||    
T  14223605 taaacttcaaacgtattggtggttaaaagcaaacttcatcacgttcgttttt 14223656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 41343020 - 41343282
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| | ||||||||||||||| || |||| ||||||||||| ||||||||||| ||||    
T  41343020 cggttatggcttttgctatcggattggcttggttttgttacggtttttaatggcaatttatatacaaatgctaatcagttttgcgctcttggaggcttct 41343119  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  41343120 caaagaattctatgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggattttccaaaaccaaattgttca 41343219  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 285  Q
    |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41343220 tttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 41343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 10003941 - 10003603
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || |||||||    
T  10003941 cggttatggcttttgctatcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttct 10003842  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    ||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||| || |||||||||| || ||     
T  10003841 caaagaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacagaaggatattccaaaaccaaagtgctct 10003742  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
     ||||| ||||| |||||||| |||||||| ||||| | ||||||||| |||||||| ||||| |||||||||||| ||||||| |||||||||   ||     
T  10003741 cttggaggttctacttgaaagagtcaaacttcaaacatattggtggtttaaagctaattacatcttgttcgtttttgattattcgtattggagaattaat 10003642  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    ||||||||||||||| | ||| |||||||||||||||||    
T  10003641 cctttaccttgtttacagactgttttgtaaagtctgttt 10003603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 26 - 337
Target Start/End: Complemental strand, 27029959 - 27029648
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||||    
T  27029959 ttatggcttatgctctcggattggttaggttttgttacggttctcaatggcaatttatattctcatgctaatcagttttgcgctttaggtggtttctcaa 27029860  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||| || || |||    
T  27029859 agaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacaggaggatattccaaaaccaaagtgctctttt 27029760  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccct 325  Q
    ||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||| |||||  || |||    
T  27029759 ggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacatcttgttcgtttttcattattcgtatttgagacttaatcct 27029660  T
Q  326 ttaccttgttta 337  Q
    ||||||||||||    
T  27029659 ttaccttgttta 27029648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 138 - 363
Target Start/End: Original strand, 44753748 - 44753973
Alignment:
Q  138 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttct 237  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| |||||||||| ||  | ||||||  |||| ||    
T  44753748 aagcttttactattatttggatttcggtcttatatactatatggaaagaccgcaacagaaggattttccaaaaccaaagtgcacttttggagtttctact 44753847  T
Q  238 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgttta 337  Q
    |||||| |||||||||||||| | |||||||||||||||||| ||||| |||||||||||| ||||||| |||||||||   || |||||||||||||||    
T  44753848 tgaaagagtcaaactccaaacatattggtggttgaaagctaattacatcttgttcgtttttgattattcgtattggagaattaatcctttaccttgttta 44753947  T
Q  338 aatactattttgtaaagtctgttttt 363  Q
     | ||| |||||||||||||||||||    
T  44753948 cagactgttttgtaaagtctgttttt 44753973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 170 - 361
Target Start/End: Original strand, 48759777 - 48759968
Alignment:
Q  170 tttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 269  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||| | |||||||| |||||||| ||||||||||||||||    
T  48759777 tttaatatatggaaagatcgcaacaggaagattttccaaaaccaaattgttcttttggaggttttacttgaaagagtcaaacttcaaacgttttggtggt 48759876  T
Q  270 tgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgttt 361  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||   || | ||||||||||||| | ||| | |||||||||||||||    
T  48759877 tgaaagctaactacatcttgttcgttttttattattcttattggagaattaatcatttaccttgtttacagactgtgttgtaaagtctgttt 48759968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 85 - 362
Target Start/End: Complemental strand, 5557215 - 5556938
Alignment:
Q  85 ttcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaa 184  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| || | | ||| ||||||| ||||||||||||||||||  | | ||||||    
T  5557215 ttcacatgctaatcagttttgtgctcttggagctttctcaaagaattcttggataacttttactattatatggatttcggtcttatttgttgtttggaaa 5557116  T
Q  185 gatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactaca 284  Q
    |||||||||||||||||||||||| ||||||||| |||| | |||| |||| |||||||||| ||||| ||||| |  |||||||||||||| |||| ||    
T  5557115 gatcgcaacaggaggatttttcaataccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttactggtggttgaaagcaaacttca 5557016  T
Q  285 ttttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattttgtaaagtctgtttt 362  Q
    |   ||||| |||| | ||| | | |||||||||||| || |||| ||||||| | ||| |  ||||| |||||||||    
T  5557015 tcacgttcgcttttgactatcccttttggagacaaaatccgttacattgtttacagactgtaatgtaatgtctgtttt 5556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 321
Target Start/End: Complemental strand, 49369774 - 49369479
Alignment:
Q  26 ttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaa 125  Q
    ||||||||  || ||||| ||||| | ||||||||||||||  |  ||| |||||||||| | ||||| || ||||||| ||| ||||||||||| ||||    
T  49369774 ttatggctcttgatatcgaattggcttggttttgttacggtgtttcatgacaatttatatactcatgctaaccagttttatgcccttggaggtttttcaa 49369675  T
Q  126 agaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcattt 225  Q
    |||||| |  |||||| || |||||||||||||||||| | ||||||  ||| ||||||||| |||| | || |||||| ||||||||  | | |||| |    
T  49369674 agaattatacgaaagctttgtctattatttggatttcgattttatttgttatttggaaagattgcaatatgaagattttccaaaaccatttgggtcatct 49369575  T
Q  226 ggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaa 321  Q
     |||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| |||| |||| ||||   |||| ||||| | | ||||||||||||    
T  49369574 tgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcaaacttcattatgtttacttttgattatcccttttggagacaaaa 49369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 37666239 - 37666028
Alignment:
Q  147 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 246  Q
    ||||||||||||||||||| ||||| |  || ||||||||| | |||||||| ||||||||  | ||| ||| |||| | |||| ||| |||||||||||    
T  37666239 ctattatttggatttcggttttattcatcatttggaaagatagaaacaggagaatttttcagcatcaatttgatcatcttgaagctctacttgaaagggt 37666140  T
Q  247 caaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactatt 346  Q
    |||||||||||| ||||||||||||||| | || |||||| |||||| |||| | ||| | ||||||||  |||| ||||||| ||||||| | |||  |    
T  37666139 caaactccaaacattttggtggttgaaaacgaattacattatgttcgattttgactatccctattggaggaaaaatcctttactttgtttacagactgct 37666040  T
Q  347 ttgtaaagtctg 358  Q
    |||||| |||||    
T  37666039 ttgtaatgtctg 37666028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 281
Target Start/End: Complemental strand, 45757644 - 45757435
Alignment:
Q  72 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 171  Q
    ||||||||||| ||  |||||  ||||||||||||||  ||||||| |||||||||||||||  || | | ||| ||||||| |||| ||  ||||||||    
T  45757644 atggcaatttacatatacatgttaatcagttttgtgcctttggaggcttctcaaagaattctaggacaccttttactattatctggacttttgtcttatt 45757545  T
Q  172 tactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttg 271  Q
    |  ||||||||||||| |||||||||  ||||| ||||| || | || |||| |  | | ||||||||||||||| || || ||||| ||||||||||||    
T  45757544 tgttatatggaaagattgcaacaggaaaattttccaaaatcacagtgatcatctaaatgctcttcttgaaagggttaagcttcaaacattttggtggttg 45757445  T
Q  272 aaagctaact 281  Q
    ||||| ||||    
T  45757444 aaagcaaact 45757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 285
Target Start/End: Complemental strand, 40392658 - 40392461
Alignment:
Q  80 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatat 179  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||||||||||     ||| |   ||||||||||||||||||  |||||||  |||||    
T  40392658 ttatatgctcattcaaatcagttttgtgctcttggagggttctcaaagaattc-----aagga---tctattatttggatttcgaccttatttgttatat 40392567  T
Q  180 ggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 279  Q
    ||||||| || ||||  || |||||| | |||||| ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||    
T  40392566 ggaaagaccgtaacaatagaatttttgataaccaatttgatcaacttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaa 40392467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 361
Target Start/End: Original strand, 32152387 - 32152500
Alignment:
Q  248 aaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccctttaccttgtttaaatactattt 347  Q
    |||||| |||||||||||||||||||||| || |||||  |||||| |||| | ||| ||||||||||  |||| ||||||| ||||||| | |||  ||    
T  32152387 aaactctaaacgttttggtggttgaaagcgaattacatcatgttcgattttgactatccttattggaggaaaaatcctttactttgtttacagactgctt 32152486  T
Q  348 tgtaaagtctgttt 361  Q
    ||||| ||||||||    
T  32152487 tgtaatgtctgttt 32152500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 26995917 - 26995826
Alignment:
Q  80 ttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 171  Q
    |||||| | ||| |||||||||||||| |||||||||| |||||||| |||||   || | |||| ||| ||||||||||||||||||||||    
T  26995917 ttatatgctcattcaaatcagttttgtactcttggagggttctcaaaaaattcaaggacaacattctctgttatttggatttcggtcttatt 26995826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 26995765 - 26995712
Alignment:
Q  233 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 286  Q
    |||||||| | ||| ||||||||||| | ||||||||||||||| |||||||||    
T  26995765 cttcttgagaaggttaaactccaaacatattggtggttgaaagcgaactacatt 26995712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 158; Significance: 6e-84; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 25 - 362
Target Start/End: Complemental strand, 74306 - 73969
Alignment:
Q  25 gttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctca 124  Q
    |||||||||| || ||||  ||||| | ||||||||||| ||  |  |||||||||||||| ||||||  ||||||||||| |||||  |||  ||||||    
T  74306 gttatggcttttgatatcaaattggcttggttttgttacagtgtttcatggcaatttatatacacatgataatcagttttgcgctctaagagacttctca 74207  T
Q  125 aagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatt 224  Q
    ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||     
T  74206 aagaattctatgaaagcttttactattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgatcatc 74107  T
Q  225 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaaccc 324  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||   ||||| |||| | ||| | | |||||||||||| ||    
T  74106 tggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacatcacgttcgcttttgactatcccttttggagacaaaatcc 74007  T
Q  325 tttaccttgtttaaatactattttgtaaagtctgtttt 362  Q
     |||  ||||||| | ||| | ||||||||||||||||    
T  74006 cttatgttgtttacagactgtcttgtaaagtctgtttt 73969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 23 - 363
Target Start/End: Original strand, 58608 - 58948
Alignment:
Q  23 cggttatggcttatgctatcggattggttaggttttgttacggttctcaatggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttct 122  Q
    |||||||||||  || ||||  ||||| | ||||||||||||||  |  | | ||||||| || ||||||| ||||||||||||||||||||||||||||    
T  58608 cggttatggctcttgatatcaaattggcttggttttgttacggtgtttcacgacaatttaaatacacatgctaatcagttttgtgctcttggaggtttct 58707  T
Q  123 caaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttca 222  Q
    |||||||  || ||| ||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||| || | |||    
T  58708 caaagaacgctatgatagcttttactattatttggatttcggtcttatttgttatatggaaagatcgcaacaggaggattttccaaaaccatatggatca 58807  T
Q  223 tttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttgttcgttttttattattcttattggagacaaaac 322  Q
    | | |||| ||||||||||||||| ||||| ||||| | ||||||||||||||| |||| |||    |||| |||| | ||| | | ||||||||||||     
T  58808 tcttgaagctcttcttgaaagggttaaacttcaaacatattggtggttgaaagcaaacttcatcactttcgcttttgactatcccttttggagacaaaat 58907  T
Q  323 cctttaccttgtttaaatactattttgtaaagtctgttttt 363  Q
    || |||  ||||||| | ||| | |||||| ||||||||||    
T  58908 cccttatgttgtttacagactgtcttgtaatgtctgttttt 58948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 225060 - 225194
Alignment:
Q  147 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggt 246  Q
    |||| |||||||||||||| ||||||  |||||||||||||||||| ||||| || |||||||| ||  |||||||| | |||| |||| | |||| |||    
T  225060 ctatcatttggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaaaggt 225159  T
Q  247 caaactccaaacgttttggtggttgaaagctaact 281  Q
     ||||| ||||||| |||||| |||||||| ||||    
T  225160 taaacttcaaacgtattggtgattgaaagcaaact 225194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 11026 - 10928
Alignment:
Q  72 atggcaatttatattcacatgcaaatcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttat 170  Q
    ||||| ||||||||   ||| ||||||| |||||||||||||||||||| ||||| |||||    | | | || |||||||||||||||||||||||||    
T  11026 atggcgatttatataatcattcaaatcaattttgtgctcttggaggtttatcaaaaaattcaagtacaactttctctattatttggatttcggtcttat 10928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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