View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_low_19 (Length: 351)

Name: NF5975_low_19
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_low_19
NF5975_low_19
[»] chr7 (22 HSPs)
chr7 (118-341)||(40515416-40515639)
chr7 (1-104)||(30863084-30863186)
chr7 (1-117)||(28327357-28327473)
chr7 (44-115)||(45461660-45461731)
chr7 (43-117)||(27956617-27956691)
chr7 (1-105)||(38129397-38129500)
chr7 (1-117)||(41913096-41913210)
chr7 (1-117)||(42711221-42711335)
chr7 (5-114)||(1690996-1691104)
chr7 (1-105)||(30623732-30623835)
chr7 (49-117)||(45857475-45857543)
chr7 (1-105)||(21699304-21699407)
chr7 (1-117)||(40942167-40942282)
chr7 (43-117)||(30936094-30936168)
chr7 (1-87)||(3910221-3910307)
chr7 (1-120)||(41381773-41381892)
chr7 (73-117)||(18990450-18990494)
chr7 (72-117)||(34118831-34118876)
chr7 (73-108)||(20438825-20438860)
chr7 (43-117)||(44963823-44963897)
chr7 (72-117)||(8770370-8770415)
chr7 (73-117)||(43750437-43750481)
[»] chr8 (23 HSPs)
chr8 (1-117)||(29229176-29229292)
chr8 (1-117)||(946260-946377)
chr8 (1-114)||(12162943-12163056)
chr8 (1-114)||(12407371-12407484)
chr8 (1-117)||(15725890-15726005)
chr8 (1-105)||(14498316-14498419)
chr8 (1-117)||(29459925-29460041)
chr8 (1-117)||(37511379-37511495)
chr8 (1-117)||(34332403-34332517)
chr8 (1-105)||(38502482-38502584)
chr8 (1-105)||(10280851-10280954)
chr8 (43-116)||(23286898-23286970)
chr8 (49-117)||(39170998-39171065)
chr8 (49-123)||(23274961-23275036)
chr8 (43-117)||(28090523-28090596)
chr8 (1-117)||(29773736-29773850)
chr8 (1-117)||(44935190-44935304)
chr8 (43-117)||(17642405-17642479)
chr8 (1-84)||(37161799-37161881)
chr8 (49-114)||(2273347-2273412)
chr8 (74-115)||(43485053-43485094)
chr8 (49-93)||(23275128-23275173)
chr8 (43-96)||(39171103-39171155)
[»] chr2 (17 HSPs)
chr2 (1-117)||(3383191-3383307)
chr2 (1-117)||(14532824-14532939)
chr2 (1-117)||(33423034-33423149)
chr2 (1-117)||(4673601-4673717)
chr2 (1-117)||(37083501-37083617)
chr2 (1-108)||(11813201-11813308)
chr2 (1-105)||(42427580-42427683)
chr2 (1-117)||(59209-59325)
chr2 (1-117)||(34665862-34665976)
chr2 (1-108)||(15771318-15771424)
chr2 (1-116)||(1353798-1353911)
chr2 (43-117)||(5389202-5389275)
chr2 (43-117)||(6884494-6884568)
chr2 (1-115)||(3810452-3810565)
chr2 (1-115)||(11227919-11228031)
chr2 (43-116)||(38963068-38963140)
chr2 (73-116)||(37909720-37909763)
[»] chr6 (13 HSPs)
chr6 (3-117)||(8401414-8401528)
chr6 (1-117)||(24213203-24213318)
chr6 (1-105)||(4110846-4110949)
chr6 (1-105)||(13390679-13390782)
chr6 (43-117)||(32833774-32833848)
chr6 (1-105)||(1096508-1096610)
chr6 (1-117)||(2259196-2259310)
chr6 (43-117)||(6848847-6848920)
chr6 (1-113)||(26358556-26358667)
chr6 (1-117)||(17545895-17546009)
chr6 (1-94)||(24487308-24487401)
chr6 (73-116)||(15383204-15383247)
chr6 (74-117)||(34195879-34195922)
[»] chr1 (31 HSPs)
chr1 (1-116)||(8461528-8461642)
chr1 (1-117)||(23061292-23061408)
chr1 (1-117)||(51985226-51985341)
chr1 (1-105)||(46770743-46770846)
chr1 (1-117)||(23056991-23057107)
chr1 (1-117)||(51369608-51369724)
chr1 (1-105)||(18642160-18642263)
chr1 (1-105)||(39971281-39971384)
chr1 (1-105)||(45423906-45424009)
chr1 (1-105)||(51520105-51520208)
chr1 (1-117)||(6519987-6520102)
chr1 (1-117)||(35305442-35305558)
chr1 (1-105)||(23459561-23459664)
chr1 (1-105)||(39190575-39190678)
chr1 (1-94)||(50905870-50905962)
chr1 (1-117)||(5956526-5956642)
chr1 (1-117)||(37499034-37499148)
chr1 (1-105)||(38262146-38262248)
chr1 (1-105)||(45673608-45673711)
chr1 (1-117)||(921842-921957)
chr1 (1-108)||(28494062-28494167)
chr1 (1-100)||(43306824-43306921)
chr1 (1-98)||(52303304-52303400)
chr1 (1-116)||(26102474-26102588)
chr1 (43-117)||(50239277-50239351)
chr1 (73-116)||(26010943-26010986)
chr1 (73-116)||(51977859-51977902)
chr1 (72-117)||(12178960-12179005)
chr1 (74-115)||(2247408-2247449)
chr1 (73-117)||(33910052-33910096)
chr1 (73-109)||(42316843-42316879)
[»] chr4 (29 HSPs)
chr4 (3-115)||(30343120-30343232)
chr4 (1-105)||(33075991-33076095)
chr4 (1-117)||(47302271-47302386)
chr4 (1-117)||(11109596-11109713)
chr4 (1-117)||(3716616-3716731)
chr4 (1-105)||(34280236-34280339)
chr4 (1-117)||(52592084-52592199)
chr4 (1-117)||(55722769-55722883)
chr4 (1-117)||(38836141-38836256)
chr4 (1-117)||(51435812-51435928)
chr4 (1-105)||(30539851-30539954)
chr4 (1-117)||(37518965-37519080)
chr4 (1-117)||(37523181-37523296)
chr4 (1-117)||(48578907-48579021)
chr4 (1-117)||(28037976-28038091)
chr4 (1-105)||(43137383-43137486)
chr4 (1-105)||(46041992-46042095)
chr4 (1-116)||(41759660-41759773)
chr4 (43-115)||(31908774-31908846)
chr4 (1-105)||(27539208-27539311)
chr4 (49-115)||(37855460-37855526)
chr4 (1-115)||(53388848-53388961)
chr4 (1-82)||(14803003-14803084)
chr4 (49-116)||(9858587-9858654)
chr4 (1-105)||(52589363-52589466)
chr4 (73-119)||(53695384-53695430)
chr4 (43-116)||(36091390-36091463)
chr4 (67-117)||(31681542-31681592)
chr4 (73-117)||(46215772-46215816)
[»] chr5 (23 HSPs)
chr5 (1-117)||(32467334-32467449)
chr5 (1-117)||(34302939-34303054)
chr5 (1-117)||(13410832-13410948)
chr5 (1-117)||(43237355-43237470)
chr5 (1-105)||(3056687-3056790)
chr5 (1-105)||(18228472-18228575)
chr5 (1-114)||(6561117-6561229)
chr5 (1-117)||(6532871-6532986)
chr5 (1-105)||(36338857-36338960)
chr5 (1-117)||(42917409-42917524)
chr5 (1-105)||(1661704-1661807)
chr5 (1-105)||(2414215-2414318)
chr5 (1-105)||(9535158-9535261)
chr5 (1-117)||(24098161-24098276)
chr5 (1-105)||(2141533-2141636)
chr5 (1-94)||(21605940-21606033)
chr5 (43-117)||(13091245-13091319)
chr5 (43-117)||(14967563-14967637)
chr5 (1-86)||(6318317-6318401)
chr5 (73-108)||(2318434-2318469)
chr5 (73-116)||(3425090-3425133)
chr5 (46-117)||(4039469-4039541)
chr5 (73-117)||(28332484-28332528)
[»] chr3 (26 HSPs)
chr3 (1-117)||(46959843-46959958)
chr3 (1-116)||(42067869-42067984)
chr3 (1-117)||(38785082-38785197)
chr3 (1-105)||(35171203-35171306)
chr3 (1-105)||(47948404-47948507)
chr3 (1-117)||(29786533-29786649)
chr3 (1-117)||(876222-876337)
chr3 (43-117)||(29347311-29347385)
chr3 (1-105)||(40650362-40650465)
chr3 (1-103)||(42848204-42848305)
chr3 (1-117)||(42363928-42364043)
chr3 (1-117)||(44365900-44366015)
chr3 (1-94)||(31309170-31309262)
chr3 (43-117)||(39629948-39630022)
chr3 (56-117)||(37492241-37492302)
chr3 (53-117)||(11140588-11140651)
chr3 (73-117)||(788473-788517)
chr3 (67-115)||(52082045-52082093)
chr3 (6-105)||(378615-378712)
chr3 (43-116)||(44670260-44670332)
chr3 (73-117)||(4663146-4663190)
chr3 (73-117)||(19547851-19547895)
chr3 (1-35)||(37492208-37492242)
chr3 (73-118)||(21288812-21288857)
chr3 (72-117)||(29806370-29806415)
chr3 (73-117)||(27647842-27647886)
[»] scaffold0077 (2 HSPs)
scaffold0077 (1-117)||(48301-48415)
scaffold0077 (71-117)||(58124-58170)
[»] scaffold0283 (1 HSPs)
scaffold0283 (52-117)||(6580-6644)
[»] scaffold0625 (1 HSPs)
scaffold0625 (73-117)||(6266-6310)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-82)||(36643-36724)
[»] scaffold0113 (1 HSPs)
scaffold0113 (73-117)||(29607-29651)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 118 - 341
Target Start/End: Complemental strand, 40515639 - 40515416
Alignment:
Q  118 cctaacaattttcttctttttatttgtaaaaatgcacaaccaatcctaaattttgatagatgccatgtggcacacaaatgcacaatttatacgcatcatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40515639 cctaacaattttcttctttttatttgtaaaaatgcacaaccaatcctaaattttgatagatgcaatgtggcacacaaatgcacaatttatacgcatcatg 40515540  T
Q  218 catgcatatttcgctttctctcttaatacctattaccaacgtatacatgatgcatcaagtcaacttaaaatgagctcaattaagttttctatacacattt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40515539 catgcatatttcgctttctctcttaatacctattaccaacgtatacatgatgcatcaagtcaacttaaaatgagctcaattaagttttctatacacattt 40515440  T
Q  318 ttacatctatcatatactcctttg 341  Q
    ||||||||||||||||||||||||    
T  40515439 ttacatctatcatatactcctttg 40515416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30863084 - 30863186
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  30863084 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttacgggt 30863182  T
Q  101 gtac 104  Q
    ||||    
T  30863183 gtac 30863186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28327357 - 28327473
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||| ||||||||| | ||||||||||||    
T  28327357 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagaggaccggtacagcttaatttgcgggt 28327456  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  28327457 gtaccgtagaagttccc 28327473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 45461660 - 45461731
Alignment:
Q  44 gataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 115  Q
    |||| |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  45461660 gatagttaaattataaaaattgtaagcgagagtaccggtacaccgtaatttgcaggtgtaccgtagaagttc 45461731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 27956617 - 27956691
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||    
T  27956617 tgatagttaatttataaaatttgtaagcgagagtaccggtacaccttaatttgcgggtgtaccatagaagttccc 27956691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38129500 - 38129397
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||||||||  ||| ||||||||||||||||||| |||||    
T  38129500 aaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcaagaataccggtacaccgtaatttacgggt 38129402  T
Q  101 gtacc 105  Q
    |||||    
T  38129401 gtacc 38129397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 41913210 - 41913096
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  41913210 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggt 41913113  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  41913112 gtaccatagaagttccc 41913096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42711221 - 42711335
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||| |    
T  42711221 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcggat 42711318  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  42711319 gtaccgtagaagttccc 42711335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 1691104 - 1690996
Alignment:
Q  5 atatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtac 104  Q
    ||||||||||||||||||| |||||||||||       ||||| |||||||| ||||||||||| |||||||||||||| ||| |||||| |||||||||    
T  1691104 atatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttaaaaaaattgtaaatgagagtaccggtataccataatttacgggtgtac 1691006  T
Q  105 cgtaaaagtt 114  Q
     ||| |||||    
T  1691005 ggtagaagtt 1690996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 30623835 - 30623732
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||| ||       ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||  ||||    
T  30623835 aaatatatatgtcaacaaacacttattttctttataaaaaa-tgatagttaatttataaaaattgtaagcgagagtatcggtacaccgtaatttatgggt 30623737  T
Q  101 gtacc 105  Q
    |||||    
T  30623736 gtacc 30623732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 45857543 - 45857475
Alignment:
Q  49 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  45857543 ttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtaaaagttccc 45857475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 21699407 - 21699304
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       |||||||||||||||||||| |||||  ||||||| ||||||||| ||||||||| ||    
T  21699407 aaatatatatgtcaacaaacacctatttctttcataaaaaaatgataattaatttataaaaa-tgtaaacgagagtatcggtacaccttaatttgcgagt 21699309  T
Q  101 gtacc 105  Q
    |||||    
T  21699308 gtacc 21699304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 40942167 - 40942282
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||| | |||||| ||| |    
T  40942167 aaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacatcttaatttacggat 40942265  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  40942266 gtaccatagaagttccc 40942282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 30936168 - 30936094
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  30936168 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 30936094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3910221 - 3910307
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacacc 87  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| |||||||||||||||||    
T  3910221 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacacc 3910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 41381773 - 41381892
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||| ||| ||||||||          ||||| |||||||||||||||||||||  | ||||||||| |||  |||||| |||||    
T  41381773 aaatatatatgtcaacaaagacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcaaaagtaccggtgcacattaatttacgggt 41381872  T
Q  101 gtaccgtaaaagttccccct 120  Q
    |||||||| ||||| |||||    
T  41381873 gtaccgtagaagtttcccct 41381892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 18990450 - 18990494
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  18990450 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 18990494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 34118831 - 34118876
Alignment:
Q  72 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||||    
T  34118831 agagtaccagtacaccttaatttgcgggtgtaccgtagaagttccc 34118876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 20438860 - 20438825
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgta 108  Q
    ||||||||||||||| ||||||||||||||||||||    
T  20438860 gagtaccggtacaccttaatttgcgggtgtaccgta 20438825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 44963897 - 44963823
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| ||| ||| ||||||||| || ||||||||    
T  44963897 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaaattgtgggtgtaccatagaagttccc 44963823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 8770415 - 8770370
Alignment:
Q  72 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    |||||| ||||||||| |||||||||||||||||||| ||| ||||    
T  8770415 agagtatcggtacaccttaatttgcgggtgtaccgtataagatccc 8770370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 43750437 - 43750481
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||    
T  43750437 gagtaccggtacaccttaatttgcaggtgtcccgtagaagttccc 43750481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 29229292 - 29229176
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29229292 aaatatatatgtcaacaaacacctattttcttcataaaaaagtgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttacgggt 29229193  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||| ||||    
T  29229192 gtaccgtagaagatccc 29229176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 946260 - 946377
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnn-tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcggg 99  Q
    ||||||||||||||||||||||  |||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  946260 aaatatatatgtcaacaaacacttattttcttcataaaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcggg 946359  T
Q  100 tgtaccgtaaaagttccc 117  Q
    ||||||||| ||||||||    
T  946360 tgtaccgtagaagttccc 946377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 12163056 - 12162943
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||| |||||||||||||| ||||||| |||       ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12163056 aaatatatctgtcaacaaacacctattttctacataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacactgtaatttgcgggt 12162957  T
Q  101 gtaccgtaaaagtt 114  Q
     ||||||| |||||    
T  12162956 ataccgtataagtt 12162943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 12407484 - 12407371
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||| |||||||||||||| ||||||| |||       ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12407484 aaatatatctgtcaacaaacacctattttctacataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacactgtaatttgcgggt 12407385  T
Q  101 gtaccgtaaaagtt 114  Q
     ||||||| |||||    
T  12407384 ataccgtataagtt 12407371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 15726005 - 15725890
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||    
T  15726005 aaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcgagagtatcggtacaccgtaatttgcaggt 15725907  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  15725906 gtaccgtagaagttccc 15725890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 14498419 - 14498316
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  14498419 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtagaccgtaatttacgggt 14498321  T
Q  101 gtacc 105  Q
    |||||    
T  14498320 gtacc 14498316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29459925 - 29460041
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  29459925 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgcaggt 29460024  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  29460025 gtaccgtagaagttccc 29460041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 37511379 - 37511495
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||| |        ||||| ||||||||||||||||||||| ||||||||||||||||| |||||| ||| |    
T  37511379 aaatatatatgtcaacaaacaccaattttctttaataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttacggat 37511478  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  37511479 gtaccgtagaagttccc 37511495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34332403 - 34332517
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  34332403 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggt 34332500  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  34332501 gtaccgtagaagttccc 34332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38502482 - 38502584
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||| ||||| ||||||||||||| |||||    
T  38502482 aaatatatatgtcaacaaacacctattttcttcataaaaa--tgatagttaatttataaaaattgtaagcgagaataccgatacaccgtaatttacgggt 38502579  T
Q  101 gtacc 105  Q
    |||||    
T  38502580 gtacc 38502584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10280851 - 10280954
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||| |||  |||||||||| ||||||||||||  |||||    
T  10280851 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgataattaatttataaaaattataaacgagagtaccgatacaccgtaattcacgggt 10280949  T
Q  101 gtacc 105  Q
    |||||    
T  10280950 gtacc 10280954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 23286898 - 23286970
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  23286898 tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 23286970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 39171065 - 39170998
Alignment:
Q  49 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  39171065 ttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 39170998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 23274961 - 23275036
Alignment:
Q  49 ttaatttataaaaattgtaagtgagagtacc-ggtacaccgtaatttgcgggtgtaccgtaaaagttccccctaac 123  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||| |||||||| |||||    
T  23274961 ttaatttataaaaattgtaagcgagagtacccggtacaccttaatttgcgggtgtatcgtagaagttcccactaac 23275036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 28090523 - 28090596
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  28090523 tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaaattgcgggtgtaccgtagaagttccc 28090596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 29773736 - 29773850
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| || |||||||||||||| ||| ||||||||    
T  29773736 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgaaagtaccggtacaccttaaattgcgggt 29773833  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  29773834 gtaccgtagaagttccc 29773850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 44935190 - 44935304
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||  ||||||||||||||||| ||| ||||||||    
T  44935190 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaaccgagagtaccggtacaccttaaattgcgggt 44935287  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  44935288 gtaccgtagaagttccc 44935304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 17642405 - 17642479
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  17642405 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 17642479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37161799 - 37161881
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtac 84  Q
    ||||||||||||||||||||||| |||||||||||       | ||| |||||||||||||||| |||| |||||||| |||||    
T  37161799 aaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattataagcgagagtactggtac 37161881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 2273347 - 2273412
Alignment:
Q  49 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagtt 114  Q
    ||||||||||||  ||  |||| |||||||||||||||| |||||||| ||||||||||| |||||    
T  2273347 ttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcaggtgtaccgtagaagtt 2273412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 43485094 - 43485053
Alignment:
Q  74 agtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 115  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  43485094 agtaccggtacaccttaatttgcgggtgtaccgtagaagttc 43485053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 23275128 - 23275173
Alignment:
Q  49 ttaatttataaaaattgtaagtgagagta-ccggtacaccgtaatt 93  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||    
T  23275128 ttaatttataaaaattgtaagcgagagtacccggtacaccttaatt 23275173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 39171155 - 39171103
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgc 96  Q
    ||||| |||||||||||||| |||||| |||||||| |||||||| ||||||||    
T  39171155 tgatagttaatttataaaaa-tgtaagcgagagtactggtacaccttaatttgc 39171103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 3383307 - 3383191
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  3383307 aaatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttacggat 3383208  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  3383207 gtaccgtagaagttccc 3383191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14532939 - 14532824
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||||| |||||||||| |||||||||||       ||||| |||| |||||||||||||||| ||||||| || |||||||||||||||||||    
T  14532939 aaatatatatgttaacaaacacctattttcttcataaaaaa-tgatagttaaattataaaaattgtaagcgagagtatcgatacaccgtaatttgcgggt 14532841  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  14532840 gtaccgtagaagttccc 14532824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 33423149 - 33423034
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||| | ||||| |||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  33423149 aaatatatatgtcaacaaacagctatttttttcattaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttgcggat 33423051  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||  ||||||||||||    
T  33423050 gtatagtaaaagttccc 33423034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4673717 - 4673601
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  4673717 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgcaggt 4673618  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  4673617 gtaccttagaagttccc 4673601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 37083501 - 37083617
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| |||||||||| |||||| |||||||||| |    
T  37083501 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccgatacaccttaatttgcggat 37083600  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  37083601 gtaccgtagaagttccc 37083617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 11813308 - 11813201
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  11813308 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgtgggt 11813209  T
Q  101 gtaccgta 108  Q
    ||||||||    
T  11813208 gtaccgta 11813201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 42427683 - 42427580
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||||||||  |||||| |||||||||||||||| |||||    
T  42427683 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcaagagtatcggtacaccgtaatttacgggt 42427585  T
Q  101 gtacc 105  Q
    |||||    
T  42427584 gtacc 42427580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 59209 - 59325
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgt-aatttgcggg 99  Q
    ||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||||||||||| | | ||||||| ||    
T  59209 aaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcgagagtaccggtacatcataaatttgcagg 59307  T
Q  100 tgtaccgtaaaagttccc 117  Q
    ||||||||| ||||||||    
T  59308 tgtaccgtagaagttccc 59325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34665862 - 34665976
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       | ||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  34665862 aaatatatatgtcaacaaacacctatttctttcataaaaaa-taatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggt 34665959  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  34665960 gtaccgtagaagttccc 34665976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 15771424 - 15771318
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||| ||       ||||| |||||||||||||||| |||| ||||||||||||||||| |||||| |||||    
T  15771424 aaatatatatgtcaacaaacacttattttctttataaaaaa-tgatagttaatttataaaaattataagcgagagtaccggtacaccttaatttacgggt 15771326  T
Q  101 gtaccgta 108  Q
    ||||||||    
T  15771325 gtaccgta 15771318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1353798 - 1353911
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       | ||| ||||||||||||||| ||||| |||||||| |||||||| ||||||||||||    
T  1353798 aaatatatatgtcaacaaacacctatttctttcataaaaaatt-atagttaatttataaaaat-gtaagcgagagtactggtacaccttaatttgcgggt 1353895  T
Q  101 gtaccgtaaaagttcc 116  Q
    |||||||| |||||||    
T  1353896 gtaccgtagaagttcc 1353911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 5389275 - 5389202
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| ||||||||    
T  5389275 tgatagttaatttataaaaat-gtaagcgagagtgccggtacaccttaatttgcgggtgtaccgtagaagttccc 5389202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 6884494 - 6884568
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| |||||| |   ||||||||||||||||||    
T  6884494 tgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttacaaatgtaccgtaaaagttccc 6884568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 3810565 - 3810452
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||| ||||||| |||||||||||       | ||| ||||||||||||||||||||| || |||||||||||||| ||||||| ||||    
T  3810565 aaatatatatgtcaaaaaacacctattttcttcataaaaaa-taatagttaatttataaaaattgtaagcgaaagtaccggtacaccttaatttgtgggt 3810467  T
Q  101 gtaccgtaaaagttc 115  Q
    ||  |||| ||||||    
T  3810466 gtgtcgtagaagttc 3810452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11227919 - 11228031
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| |||||||| | |||||| |||||||| |||    
T  11227919 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtactgatacaccttaatttgcaggt 11228016  T
Q  101 gtaccgtaaaagttc 115  Q
    |||||||| ||||||    
T  11228017 gtaccgtagaagttc 11228031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 38963140 - 38963068
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||| ||||||||||||||| ||||| |||||||||||| |||| |||||||| |||||| |||| |||||||    
T  38963140 tgatagttaatttataaaaat-gtaagcgagagtaccggtgcaccttaatttgcaggtgtaacgtagaagttcc 38963068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 37909720 - 37909763
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  37909720 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 37909763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 8401528 - 8401414
Alignment:
Q  3 atatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgt 102  Q
    ||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8401528 atatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtagcggtacaccgtaatttgcgggtgt 8401429  T
Q  103 accgtaaaagttccc 117  Q
    |||||| || |||||    
T  8401428 accgtagaaattccc 8401414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24213203 - 24213318
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  24213203 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgaaagtaccgatataccgtaatttgcgggt 24213301  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| || |||||    
T  24213302 gtaccgtagaaattccc 24213318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 4110846 - 4110949
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |||||    
T  4110846 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagaaccggtacaccgtaatttacgggt 4110944  T
Q  101 gtacc 105  Q
    |||||    
T  4110945 gtacc 4110949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 13390679 - 13390782
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |||    
T  13390679 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttacaggt 13390777  T
Q  101 gtacc 105  Q
    |||||    
T  13390778 gtacc 13390782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 32833848 - 32833774
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||    
T  32833848 tgatagttaatttataaaaattgtaagcgagagtaccagtacaccgtaatttgcggatgtaccgtagaagttccc 32833774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 1096508 - 1096610
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||| ||||       | ||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  1096508 aaatatatatgtcaacaaacacctattttcctcataaaaa--ttatagttaatttataaaaattataagcgagagtaccggtacaccgtaatttacgggt 1096605  T
Q  101 gtacc 105  Q
    |||||    
T  1096606 gtacc 1096610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2259196 - 2259310
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  2259196 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtacctgtacaccttaatttgcgggt 2259293  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  2259294 gtaccgtagaagttccc 2259310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 6848847 - 6848920
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  6848847 tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttacgggtgtaccgtagaagttccc 6848920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 26358667 - 26358556
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||| |||| |||||||| |||||||| |||||| ||| |    
T  26358667 aaatatatatgtcaacaaacacgtattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtactggtacaccataatttacggtt 26358569  T
Q  101 gtaccgtaaaagt 113  Q
    ||||| |||||||    
T  26358568 gtaccataaaagt 26358556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 17545895 - 17546009
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  17545895 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccagtacaccttaatttgcgggt 17545992  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||  || ||||||||    
T  17545993 gtactatagaagttccc 17546009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 24487401 - 24487308
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaattt 94  Q
    ||||||||||||||||||||||| ||||||||          ||||| |||| |||||||||||||||| ||||||||||||||||| ||||||    
T  24487401 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaacttataaaaattgtaagcgagagtaccggtacaccttaattt 24487308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 15383247 - 15383204
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  15383247 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 15383204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 34195922 - 34195879
Alignment:
Q  74 agtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||    
T  34195922 agtaccggtacaccttaatttgcggatgtaccgtagaagttccc 34195879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8461642 - 8461528
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8461642 aaatatatatgtcaacaaacaccaattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 8461544  T
Q  101 gtaccgtaaaagttcc 116  Q
    ||||| || |||||||    
T  8461543 gtaccatagaagttcc 8461528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 23061292 - 23061408
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  23061292 aaatatatatgtcaacaaacacctattttctttcataaaaaatgataattaatttataaaaattgtaagcgagagtaccggtacaccttaatttgcgggt 23061391  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  23061392 gtaccgtagaagttccc 23061408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 51985226 - 51985341
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||| |||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  51985226 aaatatatttgtcaacaaacacctattttcttcataaagaatt-atagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttgcaggt 51985324  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  51985325 gtaccgtagaagttccc 51985341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 46770846 - 46770743
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  46770846 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtagaccgtaatttacgggt 46770748  T
Q  101 gtacc 105  Q
    |||||    
T  46770747 gtacc 46770743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 23056991 - 23057107
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  23056991 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagaggaccggtacaccttaatttgcgggt 23057090  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  23057091 gtaccgtagaagttccc 23057107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 51369608 - 51369724
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          | ||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  51369608 aaatatatatgtcaacaaacacctattttctttcataaaaaataatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgcaggt 51369707  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||||||||||||    
T  51369708 gtaccgtaaaagttccc 51369724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 18642160 - 18642263
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||| |||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  18642160 aaatatatatgtcaacaaacacctatttttttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttacgggt 18642258  T
Q  101 gtacc 105  Q
    |||||    
T  18642259 gtacc 18642263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39971384 - 39971281
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||| ||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  39971384 aaatatatatgtcaacaaaaacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttacgggt 39971286  T
Q  101 gtacc 105  Q
    |||||    
T  39971285 gtacc 39971281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 45423906 - 45424009
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||||    
T  45423906 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacatcgtaatttacgggt 45424004  T
Q  101 gtacc 105  Q
    |||||    
T  45424005 gtacc 45424009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 51520105 - 51520208
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  51520105 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgaaagtgagagtaccggtaccccgtaatttacgggt 51520203  T
Q  101 gtacc 105  Q
    |||||    
T  51520204 gtacc 51520208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 6520102 - 6519987
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  6520102 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgc-ggt 6520004  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  6520003 gtaccgtagaagttccc 6519987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 35305442 - 35305558
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| |||||| || ||    
T  35305442 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttacgagt 35305541  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  35305542 gtaccgtagaagttccc 35305558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 23459664 - 23459561
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| |||||||| ||||||||||||||| |||||    
T  23459664 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtactggtacaccgtaatttacgggt 23459566  T
Q  101 gtacc 105  Q
    |||||    
T  23459565 gtacc 23459561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 39190678 - 39190575
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| |||||||||||||||||||||||| | |||    
T  39190678 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtaccggtacaccgtaatttactggt 39190580  T
Q  101 gtacc 105  Q
    |||||    
T  39190579 gtacc 39190575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 50905870 - 50905962
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaattt 94  Q
    ||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  50905870 aaatatatatgtcaacaaacacctattttcttcataaaaaatt-atatttaatttataaaaattgtaagcgagagtaccggtacaccgtaattt 50905962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5956642 - 5956526
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| |||||||||||||||| |||| ||||||||||||||| | ||||||| ||||    
T  5956642 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaattataagcgagagtaccggtacagcttaatttgtgggt 5956543  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  5956542 gtaccgtagaagttccc 5956526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 37499034 - 37499148
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  37499034 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggt 37499131  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  37499132 gtaccatagaagttccc 37499148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 38262248 - 38262146
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||| ||||||| || ||||||||||| | |||||    
T  38262248 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgataattaatttataaaaattgtaagcgagagta-cgatacaccgtaatctacgggt 38262151  T
Q  101 gtacc 105  Q
    |||||    
T  38262150 gtacc 38262146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 45673608 - 45673711
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||| |||||||||||||| |||||||||||       ||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||| |    
T  45673608 aaatatatttgtcaacaaacacctattttcttcataaaaaa-tgatagttaacttataaaaattgtaagcgagagtaccggtacaccgtaatttacggat 45673706  T
Q  101 gtacc 105  Q
    |||||    
T  45673707 gtacc 45673711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 921957 - 921842
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||  ||||||||||||||||| |||||||| |||    
T  921957 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaac-gagagtaccggtacaccttaatttgcaggt 921859  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  921858 gtaccatagaagttccc 921842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 28494062 - 28494167
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| |||||  |||||||||||||||| ||||||||||||    
T  28494062 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcaagagtaccggtacaccttaatttgcgggt 28494159  T
Q  101 gtaccgta 108  Q
    ||||||||    
T  28494160 gtaccgta 28494167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 43306824 - 43306921
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||||||||||||| || |||||||||||       | ||| ||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  43306824 aaatatatatgtcaacaaacgcctattttcttcataaaaa--ttatagttaatttataaaaattgtaaacgagagtaccggtacaccgtaatttacgggt 43306921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 52303304 - 52303400
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgg 98  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  52303304 aaatatatatgtcaacaaacacctattttctttcataaaaaatgatagttaatttataaaaat-gtaagtgagagtaccggtacaccttaatttgcgg 52303400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26102588 - 26102474
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||| ||||||| |||||||||||       | ||| ||||||||||||||| |||| ||||| || ||||||||||||||||   |||    
T  26102588 aaatatatatgtcaagaaacacctattttcttcataaaaaatt-atagttaatttataaaaatcgtaaatgagaatatcggtacaccgtaatttagaggt 26102490  T
Q  101 gtaccgtaaaagttcc 116  Q
    |||||||| |||||||    
T  26102489 gtaccgtagaagttcc 26102474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 50239351 - 50239277
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  50239351 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 50239277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 26010986 - 26010943
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  26010986 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 26010943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 51977902 - 51977859
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  51977902 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttcc 51977859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 12178960 - 12179005
Alignment:
Q  72 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||    
T  12178960 agagtaccggtacacctcaatttgcgagtgtaccgtaaaagttccc 12179005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 2247408 - 2247449
Alignment:
Q  74 agtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 115  Q
    |||||||||||||| ||||||| |||||||||||| ||||||    
T  2247408 agtaccggtacaccttaatttgtgggtgtaccgtagaagttc 2247449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 33910052 - 33910096
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| ||||||| |||||||||||| || |||||    
T  33910052 gagtaccggtacaccttaatttgtgggtgtaccgtagaaattccc 33910096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 42316879 - 42316843
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaa 109  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  42316879 gagtaccggtacaccttaatttgcgggtgtactgtaa 42316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 30343120 - 30343232
Alignment:
Q  3 atatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgt 102  Q
    ||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  30343120 atatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagtgagagtagcggtaaaccgtaatttgcgggtgt 30343219  T
Q  103 accgtaaaagttc 115  Q
    |||||| ||||||    
T  30343220 accgtagaagttc 30343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 33076095 - 33075991
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  33076095 aaatatatatgtcaacaaacacctattttcttcataaaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttacgggt 33075996  T
Q  101 gtacc 105  Q
    |||||    
T  33075995 gtacc 33075991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 47302271 - 47302386
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  47302271 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtaccggtacaccgtaatttacgggt 47302369  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  47302370 gtaccgtagaagttccc 47302386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 11109713 - 11109596
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttctt-catnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcggg 99  Q
    ||||||||||||||||||||| | |||||||| |||       ||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  11109713 aaatatatatgtcaacaaacatcaattttctttcataaaaaaatgatagttaatttataaaaattttaagcgagagtaccggtacaccttaatttgcggg 11109614  T
Q  100 tgtaccgtaaaagttccc 117  Q
    ||||||||| ||||||||    
T  11109613 tgtaccgtagaagttccc 11109596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 3716616 - 3716731
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||| |||||||||||||||||||||||| |  ||    
T  3716616 aaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttccaagt 3716714  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  3716715 gtaccgtagaagttccc 3716731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34280339 - 34280236
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  34280339 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgcaatttacgggt 34280241  T
Q  101 gtacc 105  Q
    |||||    
T  34280240 gtacc 34280236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 52592084 - 52592199
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||||||| ||||||||||||||| | |||||||||||||||||||||||| ||| |    
T  52592084 aaatatatatgtcaacaaacacttattttcttcataaaaaa-tgataattactttataaaaattgtatgcgagagtaccggtacaccgtaatttacggat 52592182  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  52592183 gtaccgtagaagttccc 52592199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 55722769 - 55722883
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  55722769 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggt 55722866  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||||||||||||    
T  55722867 gtaccgtaaaagttccc 55722883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38836141 - 38836256
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||| |||||       | |||||||||||| |||| ||||||| |||||||||| ||||||||||||||| |||    
T  38836141 aaatatatatgtcaacaaacacctatttttttcataaaaaatt-ataattaatttacaaaagttgtaagcgagagtaccgatacaccgtaatttgcaggt 38836239  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  38836240 gtaccgtagaagttccc 38836256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 51435928 - 51435812
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| |||||||| ||||| ||||| ||||||| |||||||||| ||||||||||||    
T  51435928 aaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttaaaaaaaatgtaaatgagagttccggtacaccttaatttgcgggt 51435829  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  51435828 gtaccatagaagttccc 51435812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 30539851 - 30539954
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||| |||||       ||||| |||||||||||||||| |||| ||||||||| |||||||||||||| |||||    
T  30539851 aaatatatatgtcaacaaacacctatttttttcataaaaaa-tgatagttaatttataaaaattataagcgagagtaccagtacaccgtaatttacgggt 30539949  T
Q  101 gtacc 105  Q
    |||||    
T  30539950 gtacc 30539954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37519080 - 37518965
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||| ||||||||||||||||||||| |||||||| | || || ||||||| |||||    
T  37519080 aaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtactgatatactgtaatttacgggt 37518982  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  37518981 gtaccgtagaagttccc 37518965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37523296 - 37523181
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||| ||||||||||||||||||||| |||||||| | || || ||||||| |||||    
T  37523296 aaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtactgatatactgtaatttacgggt 37523198  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  37523197 gtaccgtagaagttccc 37523181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 48579021 - 48578907
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||| |||||    
T  48579021 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttacgggt 48578924  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  48578923 gtaccgtagaagttccc 48578907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28037976 - 28038091
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||| |||||||| ||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||    
T  28037976 aaatatatatttcaacaaaaacctatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgtgggt 28038074  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  28038075 gtaccgtagaagttccc 28038091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 43137486 - 43137383
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||| |        ||||| ||||||||| |||||||||||||||||||||| ||||||||||||  |||||    
T  43137486 aaatatatatgtcaacaaacacctattttcttta-caaaaaatgatagttaatttattaaaattgtaagtgagagtaccgatacaccgtaattcacgggt 43137388  T
Q  101 gtacc 105  Q
    |||||    
T  43137387 gtacc 43137383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 46041992 - 46042095
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||  ||||||||||||||| |||||||  |||||    
T  46041992 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattataaacgagagtaccggtacatcgtaattcacgggt 46042090  T
Q  101 gtacc 105  Q
    |||||    
T  46042091 gtacc 46042095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 41759773 - 41759660
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||  |||||| |||||    
T  41759773 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacactttaatttacgggt 41759676  T
Q  101 gtaccgtaaaagttcc 116  Q
    |||||||| |||||||    
T  41759675 gtaccgtagaagttcc 41759660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 31908774 - 31908846
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 115  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  31908774 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttc 31908846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27539208 - 27539311
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||| |||||||||||| |||||||||||       | ||| |||||||||||||||| ||||  |||||||||||||||| |||||| ||| |    
T  27539208 aaatatatatatcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattataagcaagagtaccggtacaccataatttacggat 27539306  T
Q  101 gtacc 105  Q
    |||||    
T  27539307 gtacc 27539311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 37855460 - 37855526
Alignment:
Q  49 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 115  Q
    ||||||||||||||||||||| ||| ||||||||||||| |||||| | | ||||||||| ||||||    
T  37855460 ttaatttataaaaattgtaagcgagggtaccggtacaccttaatttacagatgtaccgtagaagttc 37855526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 53388961 - 53388848
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||  ||||||||||||||| ||||  ||||||||||||||||| |||||||| | |    
T  53388961 aaatatatatgtcaacaaacacctatttctttcataaaaaaatgatggttaatttataaaaat-gtaaacgagagtaccggtacaccttaatttgcagat 53388863  T
Q  101 gtaccgtaaaagttc 115  Q
    ||||| || ||||||    
T  53388862 gtaccatagaagttc 53388848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14803003 - 14803084
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggt 82  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||    
T  14803003 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggt 14803084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 9858587 - 9858654
Alignment:
Q  49 ttaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||||||||||  ||  |||| |||||||||||||||| |||||||| ||||||||||| |||||||    
T  9858587 ttaatttataaatttttgaagtaagagtaccggtacaccttaatttgcaggtgtaccgtagaagttcc 9858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 52589363 - 52589466
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||| ||||||| |||||||||||       | ||| |||||||||||||||| |||   |||||| |||||||||||||||| || ||    
T  52589363 aaatatatatgtcaataaacacctattttcttcataaaaaatt-atagttaatttataaaaattataaacaagagtatcggtacaccgtaatttacgagt 52589461  T
Q  101 gtacc 105  Q
    |||||    
T  52589462 gtacc 52589466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 53695430 - 53695384
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccccc 119  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  53695430 gagtaccggtacaccttaatttgcaggtgtaccgtagaagttccccc 53695384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 36091390 - 36091463
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||| | ||||||||||| |||||||    
T  36091390 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttacaggtgtaccgtagaagttcc 36091463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 31681542 - 31681592
Alignment:
Q  67 aagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| |||||| |||||||| |||||| ||||||||||||| ||||||||    
T  31681542 aagtgggagtactggtacaccttaatttacgggtgtaccgtagaagttccc 31681592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 46215816 - 46215772
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||    
T  46215816 gagtaccggtacacattaatttgcgagtgtaccgtagaagttccc 46215772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 32467334 - 32467449
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  32467334 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgcaagcgagagtaccggtacaccgtaatttgcgggt 32467432  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  32467433 gtaccgtagaagttccc 32467449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34302939 - 34303054
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||| |||||       | ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  34302939 aaatatatatgtcaacaaacacctatttttttcataaaaaatt-atagttaatttataaaaattataagtgagagtaccggtacaccgtaatttgcaggt 34303037  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  34303038 gtaccgtagaagttccc 34303054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 13410832 - 13410948
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |    
T  13410832 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgcggat 13410931  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  13410932 gtaccgtagaagttccc 13410948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 43237470 - 43237355
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||||||||| |||||| |||||||||||       | ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||    
T  43237470 aaatatatatgtcaaccaacacctattttcttcataaaaaatt-ataattaatttataaaaattgtaagcgagagtaccgatacaccgtaatttgcaggt 43237372  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  43237371 gtaccatagaagttccc 43237355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 3056687 - 3056790
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||    
T  3056687 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtaatttacgagt 3056785  T
Q  101 gtacc 105  Q
    |||||    
T  3056786 gtacc 3056790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18228575 - 18228472
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  18228575 aaatatatatgtcaacaaacacgtattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccggtagaccgtaatttacgggt 18228477  T
Q  101 gtacc 105  Q
    |||||    
T  18228476 gtacc 18228472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6561117 - 6561229
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       | ||| |||||||||||||||||||||  ||| ||||||||||||||||||||| |||    
T  6561117 aaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaagcaagaataccggtacaccgtaatttgcaggt 6561215  T
Q  101 gtaccgtaaaagtt 114  Q
    |||||||| |||||    
T  6561216 gtaccgtagaagtt 6561229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6532871 - 6532986
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||||| |||||||||| |||||||||||       ||||| |||| |||||||||||||||| ||||||| || ||||||||||||||||| |    
T  6532871 aaatatatatgttaacaaacacctattttcttcataaaaca-tgatagttaaattataaaaattgtaagcgagagtatcgatacaccgtaatttgcggat 6532969  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||| ||||||||||||    
T  6532970 gtacagtaaaagttccc 6532986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 36338960 - 36338857
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||| ||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  36338960 aaatatacatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtactggtacaccgtaatttacgggt 36338862  T
Q  101 gtacc 105  Q
    |||||    
T  36338861 gtacc 36338857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 42917409 - 42917524
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||| |||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||    
T  42917409 aaatatatatttcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttgtgggt 42917507  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| |||||||||||    
T  42917508 gtaccataaaagttccc 42917524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 1661807 - 1661704
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||| |||||       ||||| ||||||||||||||||||||| ||||| |||||||||||||||||| | |||    
T  1661807 aaatatatatgtcaacaaacacctatttttttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagcaccggtacaccgtaatttacaggt 1661709  T
Q  101 gtacc 105  Q
    |||||    
T  1661708 gtacc 1661704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2414215 - 2414318
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||||||||||||||||||| ||||| ||||||| ||| |    
T  2414215 aaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccgttacactgtaatttacggat 2414313  T
Q  101 gtacc 105  Q
    |||||    
T  2414314 gtacc 2414318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 9535158 - 9535261
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  |||||||||||       ||||| |||||||||||||||||||||||||||||||| |||||  |||||| |||||    
T  9535158 aaatatatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagtgagagtaccgttacactttaatttacgggt 9535256  T
Q  101 gtacc 105  Q
    |||||    
T  9535257 gtacc 9535261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 24098161 - 24098276
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||| ||  |||||||||||       ||||| || |||||||||||||||||| ||||||||| |||||||||||||||| |||    
T  24098161 aaatatatatgtcaacaaagacttattttcttcataaaaaa-tgatattttatttataaaaattgtaagcgagagtaccagtacaccgtaatttgcaggt 24098259  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||| ||| ||||||||    
T  24098260 gtactgtagaagttccc 24098276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 2141533 - 2141636
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    |||||||||| |||||||||||  |||||||||||       ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||  ||||    
T  2141533 aaatatatatatcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaacggtacaccgtaatttatgggt 2141631  T
Q  101 gtacc 105  Q
    |||||    
T  2141632 gtacc 2141636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21605940 - 21606033
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaattt 94  Q
    ||||||||||||||||||||||| ||||||||          ||||| |||| |||||||||||||||| ||||||||||||||||| ||||||    
T  21605940 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaacttataaaaattgtaagcgagagtaccggtacaccttaattt 21606033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 13091245 - 13091319
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||  ||  |||| |||||||||||||||| |||||| ||||||||||||| ||||||||    
T  13091245 tgatagttaatttataaatttttgaagtaagagtaccggtacaccttaatttacgggtgtaccgtagaagttccc 13091319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 14967563 - 14967637
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||  ||  |||| ||||||||| |||||| |||||||| ||||||||||| ||||||||    
T  14967563 tgatagttaatttataaatttttgaagtaagagtaccgatacaccttaatttgcaggtgtaccgtagaagttccc 14967637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 6318401 - 6318317
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacac 86  Q
    ||||||||||||||||||| ||| ||||||||| |       | ||| ||||||||||||||||||||| |||||||||| |||||    
T  6318401 aaatatatatgtcaacaaatacctattttcttcgtaaaaaatt-atagttaatttataaaaattgtaagcgagagtaccgctacac 6318317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 2318469 - 2318434
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgta 108  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2318469 gagtaccggtacaccttaatttgcgggtgtaccgta 2318434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 3425133 - 3425090
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||||||||||||  |||||||||||||||||||| |||||||    
T  3425133 gagtaccggtacactttaatttgcgggtgtaccgtagaagttcc 3425090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 4039541 - 4039469
Alignment:
Q  46 taattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcg-ggtgtaccgtaaaagttccc 117  Q
    |||||||||||||||  |   |||| |||||||||||||||| ||||||| | ||||||||||| ||||||||    
T  4039541 taattaatttataaatttatgaagtaagagtaccggtacaccttaatttgtgaggtgtaccgtagaagttccc 4039469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 28332484 - 28332528
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| ||||||||  |||||||||| ||||||||    
T  28332484 gagtaccggtacaccttaatttgcaagtgtaccgtagaagttccc 28332528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 46959843 - 46959958
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||    
T  46959843 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaagttgtaagcgagagtaccgatacaccgtaatttgcaggt 46959941  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||||||||||||    
T  46959942 gtaccgtaaaagttccc 46959958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 42067869 - 42067984
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  42067869 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgcgggt 42067968  T
Q  101 gtaccgtaaaagttcc 116  Q
    |||||||| |||||||    
T  42067969 gtaccgtagaagttcc 42067984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 38785197 - 38785082
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaa-ttgtaagtgagagtaccggtacaccgtaatttgcggg 99  Q
    ||||||||||||||||||||||| |||||||||||       | ||| |||||||||||||| ||||||| |||||||||||||||||||||||||| ||    
T  38785197 aaatatatatgtcaacaaacacctattttcttcataaaaa--ttatagttaatttataaaaaattgtaagcgagagtaccggtacaccgtaatttgcagg 38785100  T
Q  100 tgtaccgtaaaagttccc 117  Q
    ||||||||| ||||||||    
T  38785099 tgtaccgtagaagttccc 38785082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 35171306 - 35171203
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| |||||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  35171306 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattataagcgagagtaccggtacaccgtaatttacgggt 35171208  T
Q  101 gtacc 105  Q
    |||||    
T  35171207 gtacc 35171203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47948507 - 47948404
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  47948507 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccggtacaccgtcatttacgggt 47948409  T
Q  101 gtacc 105  Q
    |||||    
T  47948408 gtacc 47948404  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 29786649 - 29786533
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||  ||||||||          ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||    
T  29786649 aaatatatatgtcaacaaacacttattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggtacaccttaatttgcaggt 29786550  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  29786549 gtaccgtagaagttccc 29786533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 876337 - 876222
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||| | |||||||||||       ||||| |||| ||||||||||| |||| ||||||||| ||||| ||||||||||||||    
T  876337 aaatatatatgtcaacaaacaactattttcttcataaaaaa-tgatagttaaattataaaaattataagcgagagtaccagtacatcgtaatttgcgggt 876239  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  876238 gtaccgtagaagttccc 876222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 29347385 - 29347311
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| ||||||||    
T  29347385 tgatagttaatttataaaaattgtaagcgagagtaccggtacactgcaatttgcgggtgtaccgtagaagttccc 29347311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 40650362 - 40650465
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| |||||||||| ||||||||||||| || ||    
T  40650362 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgagagtaccgatacaccgtaatttacgagt 40650460  T
Q  101 gtacc 105  Q
    |||||    
T  40650461 gtacc 40650465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 42848305 - 42848204
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| |||||||||||       ||||| ||||||||||||||||||||| | ||||||||||||||||| |||| |||||    
T  42848305 aaatatatatgtcaacaaacacctattttcttcataaaaaa-tgatagttaatttataaaaattgtaagcgggagtaccggtacaccgtcatttacgggt 42848207  T
Q  101 gta 103  Q
    |||    
T  42848206 gta 42848204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 42364043 - 42363928
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||| |||||       | ||| |||| ||||||||||||||||  ||||||||| ||||||||||||||| |||    
T  42364043 aaatatatatgtcaacaaacacctatttttttcataaaaaatt-atagttaaattataaaaattgtaagctagagtaccgatacaccgtaatttgcaggt 42363945  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  42363944 gtaccgtagaagttccc 42363928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 44365900 - 44366015
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||| |||||    
T  44365900 aaatatatatgtcaacaaacacctatttctttcataaaaaaatgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaatttacgggt 44365998  T
Q  101 gtaccgtaaaagttccc 117  Q
    ||||| || ||||||||    
T  44365999 gtaccatagaagttccc 44366015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 31309170 - 31309262
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaattt 94  Q
    ||||||||||||||||||||||| |||||||||||       | ||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  31309170 aaatatatatgtcaacaaacacctattttcttcataaaaaatt-atagttaatttataaaaattgtaaccgagagtaccggtacaccgtaattt 31309262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 39630022 - 39629948
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||| ||||||||||||||||||||| || |||||||||||| | |||||||||| ||||||||| ||||||||    
T  39630022 tgatagttaatttataaaaattgtaagcgatagtaccggtacatcttaatttgcggatgtaccgtagaagttccc 39629948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 37492241 - 37492302
Alignment:
Q  56 ataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  37492241 ataaaaattataagcgagagtaccggtacaccgtaatttgcggatgtaccgtagaagttccc 37492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 11140588 - 11140651
Alignment:
Q  53 tttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  11140588 tttataaaaat-gtaagcgagagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 11140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 788517 - 788473
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  788517 gagtaccggtacaccttaatttgcgggtgtaccgtaaaaattccc 788473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 52082093 - 52082045
Alignment:
Q  67 aagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttc 115  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||    
T  52082093 aagtaagagtaccggtacaccttaatttgcgggtgtaccgtagaagttc 52082045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 378712 - 378615
Alignment:
Q  6 tatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtacc 105  Q
    |||||||||||||||||  |||||||||||       ||||| ||||||||||||||||  ||||||  |||||||||||| ||||||| ||||||||||    
T  378712 tatatgtcaacaaacacttattttcttcataaaaaa-tgatagttaatttataaaaatta-aagtgatggtaccggtacactgtaatttacgggtgtacc 378615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 44670332 - 44670260
Alignment:
Q  43 tgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcc 116  Q
    ||||| |||||||||||||| |||||| || |||||||| ||||| |||||| ||| ||||||||| |||||||    
T  44670332 tgatagttaatttataaaaa-tgtaagcgaaagtaccggcacaccttaatttacggatgtaccgtagaagttcc 44670260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 4663190 - 4663146
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||||    
T  4663190 gagtaccggtacaccttaatttgcggatgtaccgtagaagttccc 4663146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 19547851 - 19547895
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||    
T  19547851 gagtaccggtacaccttaatttgtgggtgtaccgtagaagttccc 19547895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37492208 - 37492242
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  37492208 aaatatatatgtcaacaaacacctattttcttcat 37492242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 21288857 - 21288812
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttcccc 118  Q
    |||||||| |||||| |||||||||||||||||||| || ||||||    
T  21288857 gagtaccgatacaccttaatttgcgggtgtaccgtagaaattcccc 21288812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 29806370 - 29806415
Alignment:
Q  72 agagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||||  |||||||| |||||||||| ||||||||    
T  29806370 agagtaccggtacacctcaatttgcgagtgtaccgtagaagttccc 29806415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 27647842 - 27647886
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    |||||||  |||||| |||||||||||||||||||| ||||||||    
T  27647842 gagtaccaatacaccttaatttgcgggtgtaccgtagaagttccc 27647886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 48301 - 48415
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggt 100  Q
    ||||||||||||||||||||||| ||||  |||||       ||||| ||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||    
T  48301 aaatatatatgtcaacaaacacctatttctttcataaaaaa-tgatagttaatttataaaaat-gtaagcgagagtaccggtacaccttaaattgcgggt 48398  T
Q  101 gtaccgtaaaagttccc 117  Q
    |||||||| ||||||||    
T  48399 gtaccgtagaagttccc 48415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 58124 - 58170
Alignment:
Q  71 gagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  58124 gagagtaccggtacaccttaaattgcgggtgtaccgtagaagttccc 58170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 6580 - 6644
Alignment:
Q  52 atttataaaaattgtaagtgagagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    |||||||||||| ||||  ||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  6580 atttataaaaat-gtaaccgagagtaccggtacaccttaaattgcgggtgtaccgtagaagttccc 6644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0625 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 6310 - 6266
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  6310 gagtaccggtacaccttaatttgcgggtgtaccgtagaagttccc 6266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36724 - 36643
Alignment:
Q  1 aaatatatatgtcaacaaacacccattttcttcatnnnnnnntgataattaatttataaaaattgtaagtgagagtaccggt 82  Q
    ||||||||||||||||||||||| ||||||||          ||||| ||||||||||||||||||||| ||||||||||||    
T  36724 aaatatatatgtcaacaaacaccaattttctttcataaaaaatgatagttaatttataaaaattgtaagcgagagtaccggt 36643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 29607 - 29651
Alignment:
Q  73 gagtaccggtacaccgtaatttgcgggtgtaccgtaaaagttccc 117  Q
    ||||||||||||||| |||||||| ||||||||||| | ||||||    
T  29607 gagtaccggtacaccttaatttgcaggtgtaccgtagatgttccc 29651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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