View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_2 (Length: 730)
Name: NF5975_low_2
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 17 - 716
Target Start/End: Complemental strand, 12508404 - 12507704
Alignment:
| Q |
17 |
acaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaatcgtaggaatcataattacaatcaaatatctgctttggatat |
116 |
Q |
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| T |
12508404 |
acaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaaccgtaggaatcataattacaatcaaatatctgctttggatat |
12508305 |
T |
|
| Q |
117 |
gaagaacattgagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctagggtttctgattgtagctctgaatggtttggattt |
216 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508304 |
gaagaacatagagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctagggtttctgattgtagctctgaatggtttggattt |
12508205 |
T |
|
| Q |
217 |
cagaatctagggttagattctgatggatctgatataggagagattaataataatgctaatattaatgttggtgatcaaggttttttggaacaactcatgg |
316 |
Q |
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| T |
12508204 |
cagaatctagggttagattctgatggatctgatataggagagattaacaataatgctaatattaatgttggtgatcaaggttttttggaacaactcatgg |
12508105 |
T |
|
| Q |
317 |
ggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatcttcttctgttcttgtgcctccaactttctctagttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508104 |
ggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatcttcttctgttcttgtgcctccaactttctctagttc |
12508005 |
T |
|
| Q |
417 |
tccttatgattgtggttcaccttatagtggttatgcttctccatataatagttgtggatccccttgtaatggttatgcctctccttattatggtagcaag |
516 |
Q |
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| T |
12508004 |
tccttatgattgtggttcaccttatagtggttatgcttctccatataatagttgtggatccccttgtaatggttatgcctctccttattatggtagcaag |
12507905 |
T |
|
| Q |
517 |
aagtaaaattgaaagaacatgaaattcgtgtttggattaacggtaagtccaatggaatcacgatggatcactgtgattttggtagaaactaaactttgga |
616 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12507904 |
aagtaaaattggaagaacatgaaattcgtgtttggattaacggcaagtccaatggaatcacgatggatcactctgattttggtagaaactaaactttgga |
12507805 |
T |
|
| Q |
617 |
gaatg-nnnnnnnttatcatggtgtcaccgtgatttcgttgaaattctcctcaatccaaacatgcatgtaatgatattgataatcataatggtgcttctt |
715 |
Q |
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| T |
12507804 |
gaatgaaaaaaaattatcatggtgtcaccgtgatttcgttgaaattctcctcaatccaaacatgcatgtaatgatattgataatcataatggtgcttctt |
12507705 |
T |
|
| Q |
716 |
g |
716 |
Q |
| |
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| |
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| T |
12507704 |
g |
12507704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 176 - 424
Target Start/End: Complemental strand, 21279607 - 21279361
Alignment:
| Q |
176 |
cttctagggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaa |
275 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
21279607 |
cttctagtgtttctgattgtagttctgaatggtttggatatcataataaagggttagattatgatggatgtgatataggagagattaatattaatgctaa |
21279508 |
T |
|
| Q |
276 |
tattaatgttggtgatcaaggtttttt-ggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaa |
374 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
21279507 |
tattaatgttggtgatcaaggtttttttggaacaactcatgggatggattgatgat---agttctgatatttgtgaaggttcaagtagtaaaaggtttaa |
21279411 |
T |
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| Q |
375 |
ggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21279410 |
ggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
21279361 |
T |
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