View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_low_20 (Length: 345)

Name: NF5975_low_20
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_low_20
NF5975_low_20
[»] chr7 (4 HSPs)
chr7 (1-330)||(40585239-40585569)
chr7 (120-193)||(10542320-10542393)
chr7 (133-195)||(24662426-24662488)
chr7 (120-188)||(1002272-1002340)
[»] chr2 (2 HSPs)
chr2 (118-194)||(35575889-35575965)
chr2 (120-188)||(32885594-32885662)
[»] scaffold0049 (1 HSPs)
scaffold0049 (120-192)||(73265-73337)
[»] chr3 (4 HSPs)
chr3 (128-183)||(49357787-49357841)
chr3 (105-179)||(47928943-47929016)
chr3 (134-211)||(46448252-46448329)
chr3 (120-189)||(946286-946354)
[»] chr8 (2 HSPs)
chr8 (120-187)||(13927686-13927753)
chr8 (120-185)||(6561489-6561554)
[»] chr5 (1 HSPs)
chr5 (120-187)||(12206822-12206889)
[»] chr6 (1 HSPs)
chr6 (163-192)||(7480023-7480052)
[»] chr1 (1 HSPs)
chr1 (120-169)||(31630836-31630885)


Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 40585569 - 40585239
Alignment:
Q  1 tttacacttattatgacatttaattatcttgaattcatgtaatataggaaatacatttaccaatatgcccctcgttataataattatcgcttaccaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585569 tttacacttattatgacatttaattatcttgaattcatgtaatataggaaatacatttaccaatatgcccctcgttataataattatcgcttaccaactt 40585470  T
Q  101 aattaattaatttatgagcatttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggcactctt 200  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40585469 aattgattaatttatgagtatttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggcactctt 40585370  T
Q  201 ttcctaataatgtggatgggttagttagacttgatgatattgatagatgcttattgtttagtggctcttgcattcaaattttcaagttcgtaa-nnnnnn 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||           
T  40585369 ttcctaataatgtggatgggttagttagacttgatgatattgatagatgcttatcgtttagtggctcttgcattcaaattttcaagttcgtaattttttt 40585270  T
Q  300 nccaatggaagttcttaatctactatctgtg 330  Q
     ||||||||||||||||||||||||||||||    
T  40585269 tccaatggaagttcttaatctactatctgtg 40585239  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 10542320 - 10542393
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttagg 193  Q
    ||||||||||||||||||||||||||||||| | |  ||||||||| |||||||||||||| ||||||||||||    
T  10542320 atttttggaataataacattaaatgtggatagaatggttgacatttacttatatttgagtctaacaaatttagg 10542393  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 24662488 - 24662426
Alignment:
Q  133 taacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggca 195  Q
    ||||||||||||| |||| |||| ||||||||| | |||||||||||||||||||||||||||    
T  24662488 taacattaaatgtagatagattagttgacatttacctatatttgagtccaacaaatttaggca 24662426  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 1002272 - 1002340
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaat 188  Q
    |||||||||| ||| ||||||||| |||||| |||| ||||| |||| |||||||||||||||| ||||    
T  1002272 atttttggaacaattacattaaatatggatagattagttgacttttgtttatatttgagtccaataaat 1002340  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 35575889 - 35575965
Alignment:
Q  118 gcatttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggc 194  Q
    |||||||||||| |  ||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  35575889 gcatttttggaacacaaacattagatgtggataaattagttgacatttgcttatatttaagtacaacaaattcaggc 35575965  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 32885662 - 32885594
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaat 188  Q
    |||||| |||||||||||||||||||  | | |||| |||||||||| ||||||| |||||||||||||    
T  32885662 atttttagaataataacattaaatgtaaacagattagttgacatttgtttatattcgagtccaacaaat 32885594  T

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Target: scaffold0049 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 73337 - 73265
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttag 192  Q
    |||||||||||||||  |||||||||| ||| |||| ||| || |||||||||||||| ||||||||||||||    
T  73337 atttttggaataatactattaaatgtgtatagattagttggcaattgcttatatttgaatccaacaaatttag 73265  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 49357841 - 49357787
Alignment:
Q  128 aataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaa 183  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||    
T  49357841 aataataacattaaatgtggataaattagttggcatttgtttata-ttgagtccaa 49357787  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 47928943 - 47929016
Alignment:
Q  105 aattaatttatgagcatttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagt 179  Q
    |||||||||||| | ||||| |||||||||||||||||| ||||||||| |  | ||||||||||||| ||||||    
T  47928943 aattaatttatgggtatttt-ggaataataacattaaatatggataaatcagctaacatttgcttatagttgagt 47929016  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 46448329 - 46448252
Alignment:
Q  134 aacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatttaggcactcttttcctaataat 211  Q
    |||||||||||||| ||||||| |||| |||||||||||||| |  |||||||||  ||||||| || | ||||||||    
T  46448329 aacattaaatgtggttaaattaattgaaatttgcttatatttaatcccaacaaatacaggcacttttatgctaataat 46448252  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 946354 - 946286
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaatt 189  Q
    ||||||| || |||| |||||||| |||||| || | ||||||||||| |||| ||||||||||||||||    
T  946354 atttttgaaacaatagcattaaatatggatagatcaattgacatttgcctata-ttgagtccaacaaatt 946286  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 13927686 - 13927753
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaa 187  Q
    ||||||||||| | ||||||| ||||||||| |||| |||||||| | ||||||| ||||||| ||||    
T  13927686 atttttggaattacaacattagatgtggatatattagttgacattcggttatattcgagtccagcaaa 13927753  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 6561489 - 6561554
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaaca 185  Q
    ||||||||||||||||||||||||| | ||| | || || || ||||||| |||| ||||||||||    
T  6561489 atttttggaataataacattaaatgggcatagaatagttaacttttgcttttattcgagtccaaca 6561554  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 12206822 - 12206889
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgcttatatttgagtccaacaaa 187  Q
    ||||||||||| | ||||||| ||||||||| |||| |||||||| | ||||||| ||||||| ||||    
T  12206822 atttttggaattacaacattagatgtggatatattagttgacattcggttatattcgagtccagcaaa 12206889  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 7480052 - 7480023
Alignment:
Q  163 tttgcttatatttgagtccaacaaatttag 192  Q
    ||||||||||||||||||||||||||||||    
T  7480052 tttgcttatatttgagtccaacaaatttag 7480023  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 31630836 - 31630885
Alignment:
Q  120 atttttggaataataacattaaatgtggataaattacttgacatttgctt 169  Q
    |||||||||||||||||||| ||||| |||| |||| || ||||||||||    
T  31630836 atttttggaataataacatttaatgtagatagattagttcacatttgctt 31630885  T

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