View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_21 (Length: 341)
Name: NF5975_low_21
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 335
Target Start/End: Complemental strand, 4530544 - 4530209
Alignment:
| Q |
4 |
atgtcgaagaatattaatcgatttaagagagtatat--tcaaaaccacatccatgattgaggaaagatttt-gacacaagtaaaatacttgaataatgat |
100 |
Q |
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|||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
4530544 |
atgtcgtaaaatattaatcgatttaagagagtatatattcaaaaacacatccatgattgaggaaagatttttgactcaagtaaaatacttgagtaatgat |
4530445 |
T |
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| Q |
101 |
ggtctcataggaaggatctcaacttttcggatgcaagagactttacgccagttttttccatatggttttgcatatctttcctctaataatgagcagttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4530444 |
ggtctcataggaaggatctcaacttttcggatgcgagagattttacgccagtcttgaccatatggttttgcatatctttcctctaataatgagcagttat |
4530345 |
T |
|
| Q |
201 |
aaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagagcgatgagag |
299 |
Q |
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| T |
4530344 |
acatgcaaagtttctgcaaagatacaaggttacgcatcgcttcgggcagtgatgtcaaaccattgcaattgtggaactcaagagtcaagagcgatgagag |
4530245 |
T |
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| Q |
300 |
attccctatccagtctggcaatcttttgccgcaaaa |
335 |
Q |
| |
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|||||||||||||||||| || ||||||||||||| |
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| T |
4530244 |
attccctatccagtctggtaactttttgccgcaaaa |
4530209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 4499084 - 4498958
Alignment:
| Q |
192 |
agcagttataaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagag |
290 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
4499084 |
agcagttagaaatgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgtcaaactattgcaattgtggaactcaagagtcaagag |
4498985 |
T |
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| Q |
291 |
cgatgagagattccctatccagtctgg |
317 |
Q |
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| T |
4498984 |
cgatgagagattccacatccagtctgg |
4498958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 335
Target Start/End: Original strand, 4397592 - 4397732
Alignment:
| Q |
192 |
agcagttataaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagag |
290 |
Q |
| |
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|||||||| |||||||||| | || |||||||||||||||| | |||| |||||| |||| |||| |||||||||||||| |||||| |||||||| |
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| T |
4397592 |
agcagttagaaatgcaaaggt-cttcaaagatacaaggttacaca---cttccggcagtaatgtcaaactattgcaattgtggatctcaagagtcaagag |
4397687 |
T |
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| Q |
291 |
cgatgagagattccctatccagtctggcaatcttttgccgcaaaa |
335 |
Q |
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| T |
4397688 |
cgatgagagattccatatccagtctggtaacctgctgccgcaaaa |
4397732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 4520099 - 4520027
Alignment:
| Q |
263 |
tgcaattgtggaactcaagggtcaagagcgatgagagattccctatccagtctggcaatcttttgccgcaaaa |
335 |
Q |
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||||||||||||||||||| |||||||||||||||||||| | |||||||||||| || ||||||||||||| |
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| T |
4520099 |
tgcaattgtggaactcaagagtcaagagcgatgagagattacatatccagtctggtaactttttgccgcaaaa |
4520027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 4499488 - 4499433
Alignment:
| Q |
51 |
tccatgattgaggaaagattttgacacaagtaaaatacttgaataatgatggtctc |
106 |
Q |
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| T |
4499488 |
tccatgattgaggaaagattttgactcaagtaaaatacttgagtaatgatggtctc |
4499433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 4520929 - 4520878
Alignment:
| Q |
51 |
tccatgattgaggaaagattttgacacaagtaaaatacttgaataatgatgg |
102 |
Q |
| |
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||||||||||| ||||||||||||| |||| ||||||||||| ||||||||| |
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| T |
4520929 |
tccatgattgatgaaagattttgactcaagaaaaatacttgagtaatgatgg |
4520878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 201 - 317
Target Start/End: Original strand, 18033394 - 18033511
Alignment:
| Q |
201 |
aaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagagcgatgagag |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
18033394 |
aaatgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgtcaaactattgcaattgtggaactcaagagtcaagagcgatgagag |
18033493 |
T |
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| Q |
300 |
attccctatccagtctgg |
317 |
Q |
| |
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||||| ||||||||||| |
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| T |
18033494 |
attccacatccagtctgg |
18033511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 335
Target Start/End: Complemental strand, 18047734 - 18047594
Alignment:
| Q |
192 |
agcagttataaatgcaaagtttctgcaaagatacaaggttatgtattgcttcgggcagtgatgt-aaaccattgcaattgtggaactcaagggtcaagag |
290 |
Q |
| |
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|||||||| |||||||||| | || |||||||||||||||| | |||| |||||| |||| |||| |||||||||||||| |||||| |||||||| |
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| T |
18047734 |
agcagttagaaatgcaaaggt-cttcaaagatacaaggttacaca---cttccggcagtaatgtcaaactattgcaattgtggatctcaagagtcaagag |
18047639 |
T |
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| Q |
291 |
cgatgagagattccctatccagtctggcaatcttttgccgcaaaa |
335 |
Q |
| |
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|||||||||||||| |||||||||||| || || |||||||||| |
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| T |
18047638 |
cgatgagagattccatatccagtctggtaacctgctgccgcaaaa |
18047594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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