View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_23 (Length: 314)
Name: NF5975_low_23
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 34780295 - 34780596
Alignment:
| Q |
1 |
ttaacacaagattccaaacctcttctattagtcgtcttacctatgataattctgttgctatggttccatttgcaccttattggaagtttattagaaagct |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780295 |
ttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcaccttattggaagtttattagaaagct |
34780394 |
T |
|
| Q |
101 |
tatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggttcttaaggtcatggctaatagtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780395 |
tatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggttcttaaggtcatggctaatagtgct |
34780494 |
T |
|
| Q |
201 |
gaaactcaacagccacttgatgtcactgaggagcttctcaagtggacaaacagcacaatctctaccatgatgttgggtgaggccgaagaggttagagata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780495 |
gaaactcaacagccacttgatgtcactgaggagcttctcaagtggacaaacagcacaatctctaccatgatgttgggtgaggccgaagaggttagagata |
34780594 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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| T |
34780595 |
tt |
34780596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 34763817 - 34763516
Alignment:
| Q |
1 |
ttaacacaagattccaaacctcttctattagtcgtcttacctatgataattctgttgctatggttccatttgcaccttattggaagtttattagaaagct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763817 |
ttaacacaagattccaaacctctgctattagtcgtcttacctatgaaaaatctgttgctatggttccatttgcaccttattggaagtttattagaaagct |
34763718 |
T |
|
| Q |
101 |
tatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggttcttaaggtcatggctaatagtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763717 |
tatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggttcttaaggtcatggctaatagtgct |
34763618 |
T |
|
| Q |
201 |
gaaactcaacagccacttgatgtcactgaggagcttctcaagtggacaaacagcacaatctctaccatgatgttgggtgaggccgaagaggttagagata |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763617 |
gaaactcaacagccacttgatgtcactgaggagcttctcaagtggacaaacagcacaatctctaccatgatgttgggtgaggccgaagaggttagagata |
34763518 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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| T |
34763517 |
tt |
34763516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 34755841 - 34755540
Alignment:
| Q |
1 |
ttaacacaagattccaaacctcttctattagtcgtcttacctatgataattctgttgctatggttccatttgcaccttattggaagtttattagaaagct |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
34755841 |
ttaacacaaggttccaaacctctgctattagtcgtcttacctatgacaactctgttgctatggttccatttggaccttactggaagtttattagaaagct |
34755742 |
T |
|
| Q |
101 |
tatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaaggttcttaaggtcatggctaatagtgct |
200 |
Q |
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||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
34755741 |
tatcatgaacgacctgctcaacgccaccactattaacaagttgaggccattgaggagccgagagatccgtaaggttcttaaggtcatggctaatagtgct |
34755642 |
T |
|
| Q |
201 |
gaaactcaacagccacttgatgtcactgaggagcttctcaagtggacaaacagcacaatctctaccatgatgttgggtgaggccgaagaggttagagata |
300 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34755641 |
gaaactcaacagccacttaatgtcactgaggagcttctcaagtggacaaacagcacaatctctacgatgatgttgggtgaggccgaagaggttagagata |
34755542 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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|
| T |
34755541 |
tt |
34755540 |
T |
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