View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_24 (Length: 308)
Name: NF5975_low_24
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 20753719 - 20753417
Alignment:
| Q |
1 |
ttagaagctcagaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatcacttgactctttctcttgtaaaggcaattc |
100 |
Q |
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| T |
20753719 |
ttagaagctcaaaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaataatcacttgactctttctcttgtaaaggcaattc |
20753620 |
T |
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| Q |
101 |
ttccttactatggcattgattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaatttca |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20753619 |
ttccttactatggcattgattttccaactaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaagttca |
20753520 |
T |
|
| Q |
201 |
ctctcttgggttttcaaacaaatgtttgttgttagtattattggaagatgacaaattaacactcnnnnnnngaacattgcacaaccatatacatattcgt |
300 |
Q |
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| T |
20753519 |
ctctcttgggttttcacacatttgtttgttgttagtattattggaagatgacatattaacactctttttttgaacattgcacaaccatatacatattggt |
20753420 |
T |
|
| Q |
301 |
cct |
303 |
Q |
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||| |
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| T |
20753419 |
cct |
20753417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 20759403 - 20759213
Alignment:
| Q |
5 |
aagctcagaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatcacttgactctttctcttgtaaaggcaattcttcc |
104 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||| |||| |||||| |
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| T |
20759403 |
aagctcaaaagactccagctatttatgtgtttggagactcacttgttgatgttggcaataacaattacttgactctttcccttgtaaaagcaactcttcc |
20759304 |
T |
|
| Q |
105 |
ttactatggcattgattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaa |
195 |
Q |
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| T |
20759303 |
tcactatggcattgattttccaactaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaagttattcaaa |
20759213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 20802285 - 20802101
Alignment:
| Q |
1 |
ttagaagctcagaagactccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatcacttgactctttctcttgtaaaggcaattc |
100 |
Q |
| |
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||||||||||| ||| ||| ||| ||||||||||||| || ||||||||||||||||| ||||| ||| |||||| | | | ||| ||| || ||| |
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| T |
20802285 |
ttagaagctcaaaaggttcctgctgtttatgtgtttggtgactcacttgttgatgttggaaacaataattacttgaatgatacctttgcaaaagctattt |
20802186 |
T |
|
| Q |
101 |
ttccttactatggcattgattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggtaa |
185 |
Q |
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| T |
20802185 |
ttccttactatggtattgattttccaactaagaaacctgctgggagattttgcaatggcaagaatgctgctgatttgattggtaa |
20802101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 40638575 - 40638741
Alignment:
| Q |
18 |
tccagctatttatgtgtttggagattcacttgttgatgttggcaacaacaatcacttgactctttctcttgtaaaggcaattcttccttactatggcatt |
117 |
Q |
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||||||| ||||||| |||||||| |||||||| |||||||| ||||| ||| |||||||||| ||| ||| ||||||| || || | ||||||| ||| |
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| T |
40638575 |
tccagctgtttatgtttttggagactcacttgtagatgttggaaacaataattacttgactctatctattgccaaggcaaatcatcgtcactatggtatt |
40638674 |
T |
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| Q |
118 |
gattttccaagtaagaaaccaactgggaggtttagcaatggcaaaaatgctgctgatttgattggta |
184 |
Q |
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||||||| | | | |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
40638675 |
gattttcttaatcacaaaccaactgggagatttagcaatggcaaaaatgctgctgattttattggta |
40638741 |
T |
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