View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_27 (Length: 303)
Name: NF5975_low_27
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 41456243 - 41455999
Alignment:
| Q |
1 |
tactactacggtattagtgatataataagattaattttcagaccacgtgttctctttttctttaaattttcaacttcttccaagaaaaaatataacacct |
100 |
Q |
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| T |
41456243 |
tactactacggtattagtgatataataagattaattttcagaccccgtgttctctttttctttaaattttcaacttcttccaagaaaaa-tataacacct |
41456145 |
T |
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| Q |
101 |
cttgaannnnnnnncgctaaggtgttattcacggtggctaaataagtgattcattgtctaattgactggaaataattctagtcgatgagaaactatacat |
200 |
Q |
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| T |
41456144 |
cttgaattttttt-cgctaaggtgttattcacggtggctaaataagtgattcattgtctaattgactggaattaattctagtcgatgagaaactatacat |
41456046 |
T |
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| Q |
201 |
ttagttaatgtatttcagtcannnnnnnatgttccgttggatgtaat |
247 |
Q |
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| T |
41456045 |
ttagttaatgtatttcagtcttttttttatgttccgttggatgtaat |
41455999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 41451679 - 41451642
Alignment:
| Q |
243 |
gtaatgttttgatttgttcttctccttttaactatact |
280 |
Q |
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| T |
41451679 |
gtaatgttttgatttgttcttctccttttaactgtact |
41451642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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