View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_29 (Length: 294)
Name: NF5975_low_29
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 34934024 - 34933775
Alignment:
| Q |
1 |
aaaatgcaacacaagtttgaacgacgtgtgaaccaatgtcgttttccaaaatgagaatgtttcaattgcattttcaaattactttatctaaacacacact |
100 |
Q |
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| T |
34934024 |
aaaatgcaacacaagtttgaacgacgcgtgaaccaatgtcgttttccaaaatgagaatgtttcaattgcattttcaaattactttatctaaacacacact |
34933925 |
T |
|
| Q |
101 |
taaggttctgtcagaaagaagnnnnnnnctgagactagttaatggtaattagcaagtaaaatgaaaagtagaaatagtgtgtgaaactcaagtaataatg |
200 |
Q |
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| T |
34933924 |
taaggttctgtcagaaagaagaaaaaaactgagactagttaatggtaattagcaagtaaaatgaaaagtagaaatagtgtgtgaaactcaagtaatagtg |
34933825 |
T |
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| Q |
201 |
gccaaaaacttgtttgttattaaaaacaaattccagttgaatttacccat |
250 |
Q |
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| T |
34933824 |
gccaaaaacttgtttgttattaaaaacaaattccagttgaatttacccat |
34933775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 34927443 - 34927235
Alignment:
| Q |
1 |
aaaatgcaacacaagtttgaacgacgtgtgaaccaatgtcgttttccaaaatgag-aatgttt--caattgcattttcaaattactttatctaaacacac |
97 |
Q |
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| T |
34927443 |
aaaatgcaacacaaatttgagcgtagcgtgaaccaacgttgttttccaaagtgatcaatgtttgtcaattgcattttcaaattactttatcttaacacac |
34927344 |
T |
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| Q |
98 |
acttaaggttctgtcagaaagaagnnnnnnnctgagactagttaatggtaattagcaagtaaaatgaaaagtagaaatagtgtgtgaaactcaagtaata |
197 |
Q |
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| T |
34927343 |
agttgaggttctgtcagaaagaagaaaaaaactgagactagttaagggtaattagcaagtaaaatgaaaagtagaaatagtgtgttaaacttaagtaata |
34927244 |
T |
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| Q |
198 |
atggccaaa |
206 |
Q |
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||||||||| |
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| T |
34927243 |
atggccaaa |
34927235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Complemental strand, 34933761 - 34933731
Alignment:
| Q |
262 |
aagaagaagttttcattgcagcttctctgtg |
292 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34933761 |
aagaagaagttttcattgcagcttctctgtg |
34933731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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