View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_31 (Length: 282)
Name: NF5975_low_31
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 276
Target Start/End: Complemental strand, 31636616 - 31636424
Alignment:
| Q |
84 |
ctacgcgtagttt-gtttatttcagtctttgatttttatatcccttttt-tgctattcctctttccaactaaacctattctaactttcttccttcggctt |
181 |
Q |
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| T |
31636616 |
ctacgcgtagttttgtttatttcagacattgattt--atatcccttttagtgctattcctctttccaactaaacctattctaactttctttcttcggctg |
31636519 |
T |
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| Q |
182 |
caagaatgaaacctcttcttcatccatcttcttttcnnnnnnnctccgtgatacttttgatgatcttcatcatcaatattcaaacgtgtctgtgc |
276 |
Q |
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| T |
31636518 |
caagaatgaaacctcttcttcatccatcttcttttctctttttctccgtgatgcttttgatgatcttcatcatcaatattccaacgtgtatgtgc |
31636424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 31621552 - 31621473
Alignment:
| Q |
2 |
catctttgatctggtgtgcaataatgaaaccactgcttcataatccatcttcttccattattatttcatctttctccttca |
82 |
Q |
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| T |
31621552 |
catctttggtctagtg-gcaaaaatgaaacctctgcttcattatccatcttcttccattattatttcatttttctccttca |
31621473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 31606869 - 31606811
Alignment:
| Q |
24 |
aatgaaaccactgcttcataatccatcttcttccattattatttcatctttctccttca |
82 |
Q |
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| T |
31606869 |
aatgaaacctatgcttcatcatccatcttcttccattattatttcctttttctccttca |
31606811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 31621469 - 31621429
Alignment:
| Q |
236 |
ttttgatgatcttcatcatcaatattcaaacgtgtctgtgc |
276 |
Q |
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| T |
31621469 |
ttttgatgatcttcatcatcaatattccaacgtgtatgtgc |
31621429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 31616781 - 31616736
Alignment:
| Q |
37 |
cttcataatccatcttcttccattattatttcatctttctccttca |
82 |
Q |
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| T |
31616781 |
cttcatcatccatcttcttccattattatttccttattctccttca |
31616736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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