View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_33 (Length: 273)
Name: NF5975_low_33
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_33 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 11612973 - 11612728
Alignment:
| Q |
18 |
ctaagcgggaagtatccctaacaatagagaactgttccgaaagggttaagctagattcaacccaaattctaagaattgtaatagatgtttaatttctatt |
117 |
Q |
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| T |
11612973 |
ctaagcgggaagtgtccctaaccatagagaactgtttcgaaagggttaagctagattcaacccatattctaagaattgtaatagatgtttaatttctatt |
11612874 |
T |
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| Q |
118 |
tattatgcttgataatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttc |
217 |
Q |
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| T |
11612873 |
tattatgcttgataatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcataacaatcatgcccggatgtctttc |
11612774 |
T |
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| Q |
218 |
aaaattcatccattcaggactacattagaataacataggctttcat |
263 |
Q |
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| T |
11612773 |
aaaattcatccattcaggattacattagaataacataggctttcat |
11612728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 40654 - 40761
Alignment:
| Q |
156 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
255 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
40654 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
40753 |
T |
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| Q |
256 |
gctttcat |
263 |
Q |
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| T |
40754 |
gctttcat |
40761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 158 - 263
Target Start/End: Original strand, 34023 - 34128
Alignment:
| Q |
158 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc |
257 |
Q |
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| T |
34023 |
tagttcctccgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc |
34122 |
T |
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| Q |
258 |
tttcat |
263 |
Q |
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|||||| |
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| T |
34123 |
tttcat |
34128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 27446704 - 27446597
Alignment:
| Q |
156 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
255 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
27446704 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
27446605 |
T |
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| Q |
256 |
gctttcat |
263 |
Q |
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|||||||| |
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| T |
27446604 |
gctttcat |
27446597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 14454790 - 14454894
Alignment:
| Q |
158 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc |
257 |
Q |
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|||||| |||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
14454790 |
tagttcttctgtacatggaaatagattaatgatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc |
14454889 |
T |
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| Q |
258 |
tttca |
262 |
Q |
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||||| |
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| T |
14454890 |
tttca |
14454894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 13764432 - 13764325
Alignment:
| Q |
156 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
255 |
Q |
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|||| |||||||||||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
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| T |
13764432 |
cttaattcctctgtacatggaaataaattcaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
13764333 |
T |
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| Q |
256 |
gctttcat |
263 |
Q |
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|||||||| |
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| T |
13764332 |
gctttcat |
13764325 |
T |
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