View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5975_low_36 (Length: 264)
Name: NF5975_low_36
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 44655457 - 44655230
Alignment:
| Q |
16 |
atactatcaacgtataatcgttggtgaacatatacattcattcataatcattcaattagatgacatgttagaagagatatctgaacgtacaaacatagac |
115 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44655457 |
atacaatcaacgtataatcattggtgaacatatacattcat----aatcattcaattagatgacatgtcagaagagatatctgaacgtacaaacatagac |
44655362 |
T |
|
| Q |
116 |
aaatctactctaacatagacagatctataaacataataattatatgataataaacaagtcatgttcgacatcacaaa-atatcatatcaataagaacacg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
44655361 |
aaatctactctaacatagacagatctataaacataataattatatgataataaacaagtcatgttcgacatcacaaagatatcatatcaataagaacatg |
44655262 |
T |
|
| Q |
215 |
tgcatcaaacagaagccaatcctgcatgaata |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44655261 |
tgcatcaaacagaagccaatcctgcatgaata |
44655230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University