View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_38 (Length: 255)
Name: NF5975_low_38
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 6032901 - 6033069
Alignment:
| Q |
18 |
gattgcaataccagtccaaatcgatattagctgatatttttcagcatattctgagatcataagaatgaattattctaaaagtgcttttacaaagaatcgt |
117 |
Q |
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| T |
6032901 |
gattgcaataccagtccaaatcgatattagctgatatttttcagcatattctgagatcataagaatgaattattctaaaagtgcttttacaaagaatcgt |
6033000 |
T |
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| Q |
118 |
tttcatatggagacatttcattttctgttctatttttccctttagacaatgtctgtattctgtactaaa |
186 |
Q |
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| T |
6033001 |
tttcatatggagacatttcattttctgttctatttttccctttagacaatgtctgtattctgtactaaa |
6033069 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 6033102 - 6033138
Alignment:
| Q |
219 |
ctcaaagatctgccaagggcatgtgacagtttggctt |
255 |
Q |
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| T |
6033102 |
ctcaaagatctgccaagggcatgtgacagtttggctt |
6033138 |
T |
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