View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_44 (Length: 249)
Name: NF5975_low_44
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 4529997 - 4529768
Alignment:
| Q |
1 |
tctgcagcagcggtttcacaggaaatccaacctttttatttctaatcttcctctaaggttgtttagctcacctaactcatttatgttcatacttctattg |
100 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
4529997 |
tctgcagcagcg-tttcgcaggaaatccaacctttttatttctaatcttcctctaaggttgtttagctcacctaactcatttacgttcgtacttctattg |
4529899 |
T |
|
| Q |
101 |
ttcagtacaaaaagtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgccta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
4529898 |
ttcagtacaaaaagtgtcagtgtttgaagatta-accaactgtactaacccttgtggcatacatctcaatctctcacaaccattcaactcaagatgccta |
4529800 |
T |
|
| Q |
201 |
agacttttactgagattttctggtaatatttc |
232 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
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|
| T |
4529799 |
agacttttgttgagattttctggtaatatttc |
4529768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 4397905 - 4398122
Alignment:
| Q |
14 |
tttcacaggaaatccaacctttttatttctaatcttcctctaaggttgtttagctcacctaactcatttatgttcatacttctattgttcagtacaaaaa |
113 |
Q |
| |
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|||| |||||||| ||||| ||||| ||||||||| ||||| |||||||||||| | | |||||||||| | |||||| | |||||||||||||| |
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| T |
4397905 |
tttcgcaggaaattcaacccttttaattctaatctccctctcaggttgtttagcctagccaactcatttacacttgtacttccagagttcagtacaaaaa |
4398004 |
T |
|
| Q |
114 |
gtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactga |
213 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||||||||| |||||| || ||| |
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| T |
4398005 |
gtgttagtgtttgaagatcagtc-aactgtcctagcccccgtggcatacatctcaatctctcgcaaccatttaactcaagatgcctgagacttctattga |
4398103 |
T |
|
| Q |
214 |
gattttctggtaatatttc |
232 |
Q |
| |
|
|||||||||| |||||||| |
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| T |
4398104 |
gattttctggcaatatttc |
4398122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 4498737 - 4498520
Alignment:
| Q |
14 |
tttcacaggaaatccaacctttttatttctaatcttcctctaaggttgtttagctcacctaactcatttatgttcatacttctattgttcagtacaaaaa |
113 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||||||| | |||||| | |||||||||||||| |
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| T |
4498737 |
tttcgcaggaaattcaacccttttaattctaatctccctctcaggttgtttagctcacccaactcatttacacttgtacttccagagttcagtacaaaaa |
4498638 |
T |
|
| Q |
114 |
gtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactga |
213 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||| |||||||||| | || ||| | |||||||| |||||||||||||| |||||| || ||| |
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| T |
4498637 |
gtgttagtgtttgaagatcagtc-aactgtcctagcccacatggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttctattga |
4498539 |
T |
|
| Q |
214 |
gattttctggtaatatttc |
232 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
4498538 |
gattttctggcaatatttc |
4498520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 4519797 - 4519580
Alignment:
| Q |
14 |
tttcacaggaaatccaacctttttatttctaatcttcctctaaggttgtttagctcacctaactcatttatgttcatacttctattgttcagtacaaaaa |
113 |
Q |
| |
|
|||| |||||| | ||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||||||| | |||||| | |||||||||||||| |
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|
| T |
4519797 |
tttcgcaggaacttcaacccttttaattctaatctccctctcaggttgtttagctcacccaactcatttacacttgtacttccagagttcagtacaaaaa |
4519698 |
T |
|
| Q |
114 |
gtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactga |
213 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||| ||||||||||| | || ||| | |||||||| |||||||||||||| |||||| || ||| |
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| T |
4519697 |
gtgttagtgtttgaagatcagtc-aactgtcctagcccacgtggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttctattga |
4519599 |
T |
|
| Q |
214 |
gattttctggtaatatttc |
232 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
4519598 |
gattttctggcaatatttc |
4519580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 18033732 - 18033949
Alignment:
| Q |
14 |
tttcacaggaaatccaacctttttatttctaatcttcctctaaggttgtttagctcacctaactcatttatgttcatacttctattgttcagtacaaaaa |
113 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||||||| | |||||| | |||||||||||||| |
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| T |
18033732 |
tttcgcaggaaattcaacccttttaattctaatctccctctcaggttgtttagctcacccaactcatttacacttgtacttccagagttcagtacaaaaa |
18033831 |
T |
|
| Q |
114 |
gtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactga |
213 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||| ||||||||||| | || ||| | |||||||| |||||||||||||| |||||| || ||| |
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|
| T |
18033832 |
gtgttagtgtttgaagatcagtc-aactgtcctagcccacgtggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttctattga |
18033930 |
T |
|
| Q |
214 |
gattttctggtaatatttc |
232 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
18033931 |
gattttctggcaatatttc |
18033949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 18047421 - 18047204
Alignment:
| Q |
14 |
tttcacaggaaatccaacctttttatttctaatcttcctctaaggttgtttagctcacctaactcatttatgttcatacttctattgttcagtacaaaaa |
113 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||| ||||| |||||||||||| | | |||||||||| | |||||| | |||||||||||||| |
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|
| T |
18047421 |
tttcgcaggaaattcaacccttttaattctaatctccctctcaggttgtttagcctagccaactcatttacacttgtacttccagagttcagtacaaaaa |
18047322 |
T |
|
| Q |
114 |
gtgtcagtgtttgaagattagtttaactgtcctagcccctgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactga |
213 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||||||||| |||||| || ||| |
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|
| T |
18047321 |
gtgttagtgtttgaagatcagtc-aactgtcctagcccccgtggcatacatctcaatctctcgcaaccatttaactcaagatgcctgagacttctattga |
18047223 |
T |
|
| Q |
214 |
gattttctggtaatatttc |
232 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
18047222 |
gattttctggcaatatttc |
18047204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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