View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_45 (Length: 248)
Name: NF5975_low_45
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 52938322 - 52938550
Alignment:
| Q |
1 |
ttatcatatcaaactagttcaccgccggccacctctctttgcctcgccagcgcagtcacactaatttcaaacactaagtgggttcaannnnnnn-gttnn |
99 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52938322 |
ttatcatatcaaaccagttcgccgccggccacctctctttgcc--gccagcgcagtcacactaatttcaaacactaagtgggttcaattttttttgttaa |
52938419 |
T |
|
| Q |
100 |
nnnnnnnnnngataggttcaattttctcttcaaaaccgaatttagcatttatttgtttgttattaactaactaaaaaccagtgttgttgagttagatctg |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
52938420 |
aaaataaaaatataggttcaattttctcttcaaaaccgaatttagcatttatttgtttgttattaactaactaaagaccaatgttgttgagttagatctg |
52938519 |
T |
|
| Q |
200 |
ggacgattaagaatgatgaacggggcatgtg |
230 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
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|
| T |
52938520 |
ggacgattaagaatgatgaacgaggcatgtg |
52938550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 50424157 - 50423977
Alignment:
| Q |
1 |
ttatcatatcaaactagttcaccgccggccacctctctttgcctcgccagcgcagtcacactaatttcaaacactaagtgggttcaannnnnnn-gttnn |
99 |
Q |
| |
|
||||||||||| |||||| | |||| ||||||||| ||||||||||||| | |||||||| |||||||| | |||||||||||||| ||| |
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| T |
50424157 |
ttatcatatcacactagtccgccgctggccacctccctttgcctcgccatcatagtcacacaaatttcaatccctaagtgggttcaattttttttgttaa |
50424058 |
T |
|
| Q |
100 |
nnnnnnnnnngataggttcaattttctcttcaaaaccgaatttagcatttatttgtttgttattaactaactaaaaaccagtgtt |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50424057 |
aaaataaaaagataggttcaattttctcttcaaaaccgaatttagcattta----cttgttattaactaactaaaaaccagtgtt |
50423977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 50585108 - 50585194
Alignment:
| Q |
1 |
ttatcatatcaaactagttcaccgccggccacctctctttgcctcgccagcgcagtcacactaatttcaaacactaagtgggttcaa |
87 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50585108 |
ttatcatatcaaactagttcgccatcgaccacctctctttgcctcaccagcgcagtcacactaatttcaaacactaagtaggttcaa |
50585194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 140
Target Start/End: Original strand, 50585218 - 50585248
Alignment:
| Q |
110 |
gataggttcaattttctcttcaaaaccgaat |
140 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
50585218 |
gataggttcaattttctcttcaaaaccgaat |
50585248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 7944016 - 7943836
Alignment:
| Q |
1 |
ttatcatatcaaactagttcaccgccggccacctctctttgcctcgccagcgcagtcacactaatttcaaacactaagtgggttcaannnnnnn-gttnn |
99 |
Q |
| |
|
||||||||||| |||||| | |||| ||||||||| ||||||||||||| | |||||||| |||||||| | |||||||||||||| ||| |
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|
| T |
7944016 |
ttatcatatcacactagtccgccgctggccacctccctttgcctcgccatcatagtcacacaaatttcaatctctaagtgggttcaattttttttgttaa |
7943917 |
T |
|
| Q |
100 |
nnnnnnnnnngataggttcaattttctcttcaaaaccgaatttagcatttatttgtttgttattaactaactaaaaaccagtgtt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
7943916 |
aaaataaaaagataggttcaattttctcttcaaaaccgaatttagcattta----cttgttattaactaactaaaaaccagtgtt |
7943836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 44345688 - 44345618
Alignment:
| Q |
110 |
gataggttcaattttctcttcaaaaccgaatttagcatttatttgtttgttattaactaactaaaaaccagtgtt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44345688 |
gataggttcaattttctcttcaaaaccgaatttagcattta----cttgttattaactaactaaaaaccagtgtt |
44345618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 44345798 - 44345712
Alignment:
| Q |
1 |
ttatcatatcaaactagttcaccgccggccacctctctttgcctcgccagcgcagtcacactaatttcaaacactaagtgggttcaa |
87 |
Q |
| |
|
||||||||||| |||||| | |||| ||||||||| ||||||||| ||| | |||||||| |||||||| | |||||||||||||| |
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| T |
44345798 |
ttatcatatcacactagtccgccgctggccacctccctttgcctcaccatcatagtcacacaaatttcaatccctaagtgggttcaa |
44345712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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