View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_46 (Length: 244)
Name: NF5975_low_46
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_46 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 2901547 - 2901774
Alignment:
| Q |
17 |
atgaaatacataatagaccattctcaagctcacatttattattgaataagtaactatatagctacaaaatgttaaggatttgtagcctttgcaggaggag |
116 |
Q |
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| T |
2901547 |
atgaaatacataatagaccattctcaagctcacatttattattgaataagtaactatatagctacaaaatgttaaggatttgtagcctttgcaggaggag |
2901646 |
T |
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| Q |
117 |
gtcgtcggaagcagcagatggctggaataggaggaggaggacatggtccaaatggaatacaaacctttttcacatttccatgaacaatttcatttccttg |
216 |
Q |
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| T |
2901647 |
gtcgtcggaagcagcagatggctggaataggaggaggaggacatggtccaaatggaatacaaacctttttcacatttccatgaacaatttcatttccttg |
2901746 |
T |
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| Q |
217 |
aacaccaccaaacattgtgcacaaaaca |
244 |
Q |
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| T |
2901747 |
aacaccaccaaacattgtgcacaaaaca |
2901774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 2903238 - 2903320
Alignment:
| Q |
24 |
acataatagaccattctcaagctcacatttattatt--gaataagtaactatatagctacaaaatgttaaggatttgtagcctt |
105 |
Q |
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| T |
2903238 |
acataatagaactttcacaagctcacatttcttattccgaa-aagtaacaaaaaagctacaaaagtttaaggatttgtagcctt |
2903320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 14707449 - 14707490
Alignment:
| Q |
26 |
ataatagaccattctcaagctcacatttattattgaataagt |
67 |
Q |
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| T |
14707449 |
ataatagaccattctcaagctcacatctattattgaaaaagt |
14707490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 14707484 - 14707518
Alignment:
| Q |
82 |
aaaatgttaaggatttgtagcctttgcaggaggag |
116 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
14707484 |
aaaaagttaaggatttgtagcctttgcaggaggag |
14707518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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