View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5975_low_49 (Length: 238)

Name: NF5975_low_49
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5975_low_49
NF5975_low_49
[»] chr5 (5 HSPs)
chr5 (2-217)||(6611755-6611970)
chr5 (29-121)||(8249076-8249168)
chr5 (29-121)||(4926210-4926301)
chr5 (29-121)||(42457106-42457198)
chr5 (29-142)||(17972440-17972553)
[»] chr6 (4 HSPs)
chr6 (46-217)||(24638596-24638768)
chr6 (27-124)||(10303767-10303863)
chr6 (29-124)||(19153932-19154027)
chr6 (36-112)||(17293345-17293421)
[»] chr4 (2 HSPs)
chr4 (29-121)||(40434545-40434637)
chr4 (29-121)||(5634257-5634349)
[»] chr7 (2 HSPs)
chr7 (29-198)||(40682104-40682273)
chr7 (27-110)||(10274879-10274962)
[»] chr2 (1 HSPs)
chr2 (29-105)||(9584030-9584106)
[»] chr1 (2 HSPs)
chr1 (29-190)||(44889608-44889769)
chr1 (35-112)||(48611362-48611439)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 6611755 - 6611970
Alignment:
Q  2 tatcatttgagattcttccacttttgtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaact 101  Q
    |||||||||||||||||||||||||| ||||  | |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  6611755 tatcatttgagattcttccacttttgggtggaggcggaggcggaggttgtttgtgtgggaagatgagcagttgggggaactatgtttattacttcaaact 6611854  T
Q  102 gtgattttgcacgttgacaaggacaacagatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctcggg 201  Q
    ||||||||||| |||||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6611855 gtgattttgcaggttgacaaggacgacagatgattatggaatctagaaaaatctaatgatttctctgttcgtagtgcttacaattttcagactgctcagg 6611954  T
Q  202 tcattgttgacgctcc 217  Q
    ||||||||||||||||    
T  6611955 tcattgttgacgctcc 6611970  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 8249168 - 8249076
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||||||||||| |||||||| || ||||||||||||  ||||||||| || |||| |||||||||||| ||||||||    
T  8249168 gtggaagtggaggcggaggttgtttgcatgggaagaggagcagttgggggaaaaatgtttattgcttcaaaatgtgattttgcaggttgacaa 8249076  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 4926210 - 4926301
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||||||||||| ||||| || || ||||||||| ||||||||||| |||| |||| |||||||||||| ||||||||    
T  4926210 gtggaagtggaggcggaggttgtttgcatgggaggaggagcagttgggg-aactatgtttactacttcaaagtgtgattttgcaagttgacaa 4926301  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 42457106 - 42457198
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||||||||||||||||| || || ||| |||||||| |||||||||| || |||| ||||| |||||| ||||||||    
T  42457106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtgggggaattatgtttattgcttcaaaatgtgactttgcaagttgacaa 42457198  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 17972553 - 17972440
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 128  Q
    |||| |||||||||| ||||||||||| |||||||| || ||| ||| |||| ||||| |||| || |||| |||||||||||| | |||||| ||  ||    
T  17972553 gtggaagtggaggcgaaggttgtttgcatgggaagaggagcagatggaggaattatgtctattgcttcaaaatgtgattttgcaggctgacaaagaggac 17972454  T
Q  129 agatgattatggaa 142  Q
    |||||  |||||||    
T  17972453 agatggatatggaa 17972440  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 24638596 - 24638768
Alignment:
Q  46 ggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaacagatgattatggaatct 145  Q
    ||||| ||||||||||||| ||  |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||  ||| |||| |    
T  24638596 ggttgcttgcgtgggaagaggagaagttaggggaactatgtttattacttcaaactgtgattttgcaggttgacaaggacgacagatggctattgaatat 24638695  T
Q  146 nnnnnnntctaatgatttctctgttcgtagtgcttacaa-ttttcagactgctcgggtcattgttgacgctcc 217  Q
           ||||||| ||||||  ||||||||| |||||| |||||||| ||||| | | ||||||||||||||    
T  24638696 gaaaaaatctaatgctttctcctttcgtagtgtttacaatttttcagattgctcagcttattgttgacgctcc 24638768  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 10303863 - 10303767
Alignment:
Q  27 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 124  Q
    |||||| ||||||||||||||||||||| || | |||| || ||| ||||||||||  | |||||| |||||||||||| |||||| |||||||||||    
T  10303863 gtgtggaagtggaggcggaggttgtttgtgttg-aagaggagcaggtgggggaacttagattattagtccaaactgtgactttgcaggttgacaagga 10303767  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 19154027 - 19153932
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaagga 124  Q
    |||| |||||||||| ||||||||||| |||||||| ||  || |||| ||||| |||||||||||  ||| ||||| ||| || ||| |||||||    
T  19154027 gtggaagtggaggcgaaggttgtttgcttgggaagaggataaggtgggagaactttgtttattacttgaaaatgtgaatttacaggttaacaagga 19153932  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 17293421 - 17293345
Alignment:
Q  36 tggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 112  Q
    |||||| |||||||||||||||||||||| ||   | ||||||||||  | |||||||| |||| ||||| ||||||    
T  17293421 tggaggtggaggttgtttgcgtgggaagaagagttggtgggggaacttaggttattacttcaaaatgtgactttgca 17293345  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 40434545 - 40434637
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| ||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||| || |||| | |||||||||| ||||||||    
T  40434545 gtggaagtggaggcggaggttgtttgcgtgggaagaggagtagttgggggaattatgtttattgcttcaaaatatgattttgcaggttgacaa 40434637  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 5634257 - 5634349
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaa 121  Q
    |||| |||||||||||||| |||||| ||||||||| ||  || |||||||||||||||||||||| || | ||||| |||||| ||||||||    
T  5634257 gtggaagtggaggcggaggctgtttgtgtgggaagaggagaaggtgggggaactatgtttattacttcacaatgtgactttgcatgttgacaa 5634349  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 40682104 - 40682273
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 128  Q
    |||| |||||||| ||||||||||||| ||||| || ||  || |||||||||| ||||||||||| |||| ||| | |||||| ||||| |||||  ||    
T  40682104 gtggaagtggaggaggaggttgtttgcatgggaggaggagaaggtgggggaactttgtttattacttcaaaatgtaactttgcaggttgaaaaggaggac 40682203  T
Q  129 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttcagactgctc 198  Q
    | |||  | || ||| |       |||||||  ||||||||||||||||||||| |||||| | ||||||    
T  40682204 atatggctttgaaatttggaaaaatctaatgtgttctctgttcgtagtgcttacgattttctgtctgctc 40682273  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 10274879 - 10274962
Alignment:
Q  27 gtgtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttg 110  Q
    |||||| |||||||||| ||||||||||||||||| || ||   | ||||||||||  | ||||||||||||||||||| ||||    
T  10274879 gtgtggaagtggaggcgaaggttgtttgcgtgggaggaggaggtggtgggggaacttaggttattactccaaactgtgactttg 10274962  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 9584106 - 9584030
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtga 105  Q
    |||| |||||||||||||||||||||||||||| || || ||| ||| |||  |||||||||| || |||| |||||    
T  9584106 gtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtggtggatttatgtttattgcttcaaaatgtga 9584030  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 44889769 - 44889608
Alignment:
Q  29 gtgggagtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgcacgttgacaaggacaac 128  Q
    |||| ||||||||| |||||| |||| ||||||||| ||  || | |||||||| ||||||||||| |||| ||| | |||||| ||||||| |||  |     
T  44889769 gtggaagtggaggcagaggttatttgtgtgggaagaggagaaggtaggggaactttgtttattacttcaaaatgtaactttgcaggttgacagggaggat 44889670  T
Q  129 agatgattatggaatctnnnnnnntctaatgatttctctgttcgtagtgcttacaattttca 190  Q
    |||||  | |||||| |       ||| |||  | |||||||||||||||||||||||||||    
T  44889669 agatggctttggaatttggaaaaatcttatgcatactctgttcgtagtgcttacaattttca 44889608  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 48611439 - 48611362
Alignment:
Q  35 gtggaggcggaggttgtttgcgtgggaagatgaccagttgggggaactatgtttattactccaaactgtgattttgca 112  Q
    |||||||||||||||||| |||||||| || || | | |||  ||||| ||||||||||| |||| ||||| ||||||    
T  48611439 gtggaggcggaggttgttcgcgtgggaggaggatctggtggaagaactttgtttattacttcaaaatgtgactttgca 48611362  T

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