View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_52 (Length: 236)
Name: NF5975_low_52
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 34934041 - 34934156
Alignment:
| Q |
1 |
atccaaacacggtctatcctacatcaaattgtttatcactatcatatgtagtggttcagtttttattgaagttagctgtgtgttttgacttttaatttca |
100 |
Q |
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| T |
34934041 |
atccaaacacggtctatcctacatcaaattgtttatcactatcatatgtagtggttcagtttttattgaagttggctgtgtgttttgacttttaatttca |
34934140 |
T |
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| Q |
101 |
ttgtcatcgatcaaaa |
116 |
Q |
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|||||||||||||||| |
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| T |
34934141 |
ttgtcatcgatcaaaa |
34934156 |
T |
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Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 200
Target Start/End: Original strand, 34927462 - 34927658
Alignment:
| Q |
3 |
ccaaacacggtctatcctacatcaaattgtttatcactatcatatgtagtggttcagtttttattgaagttagctgtgtgttttgacttttaatttcatt |
102 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||| |
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| T |
34927462 |
ccaaacacggtctatcctacatcaaattgtttttcactatcatatgtagtggttcagttttccttgaaattcgctgtgtgctttgagttttaatttcatt |
34927561 |
T |
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| Q |
103 |
gtcatcgatcaaaaaaatgtctat--tttaagagctaaaacaatnnnnnnnnnnntccttgatcactatgtgtttccttttgaggcaattggtaaggaaa |
200 |
Q |
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||||||||||||| ||||||||| | ||| ||||||||||| |||||| | ||||||||| |||||||||||||||||||||||||| |
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| T |
34927562 |
ttcatcgatcaaaacaatgtctatagtctaattgctaaaacaat---aaaaaatatccttggtgactatgtgtatccttttgaggcaattggtaaggaaa |
34927658 |
T |
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