View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5975_low_54 (Length: 228)
Name: NF5975_low_54
Description: NF5975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5975_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 31143317 - 31143492
Alignment:
| Q |
22 |
attcactacgccatgacaatgatttgttcccatcttgatctgcacagaacacacctgatgtgttcaagttccatttaattttctgaggattgtatgattg |
121 |
Q |
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| T |
31143317 |
attcactacgccatgacaatgatttgttcccatcctgagctgcacaaaatacaccagatgtgttcaagttccatttaattttatgaggattgtatgattg |
31143416 |
T |
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| Q |
122 |
atatgtagccttcacgttgttagctctttgagcagatgcaagtgctagaacacaaaatattaacaccttatccaat |
197 |
Q |
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| T |
31143417 |
atatgtagccttcacgttgttagcactttgagcagatgcaagtgctagaacacaaaatatcaacaccttatccaat |
31143492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 31175133 - 31175197
Alignment:
| Q |
30 |
cgccatgacaatgatttgttcccatcttgatctgcacagaacacacctgatgtgttcaagttcca |
94 |
Q |
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| T |
31175133 |
cgccatgacaatggtttgttaccatcttgagctgcacagaacacacctgatgtgttcaagttcca |
31175197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 31206470 - 31206534
Alignment:
| Q |
30 |
cgccatgacaatgatttgttcccatcttgatctgcacagaacacacctgatgtgttcaagttcca |
94 |
Q |
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| T |
31206470 |
cgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttcca |
31206534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 31192632 - 31192693
Alignment:
| Q |
31 |
gccatgacaatgatttgttcccatcttgatctgcacagaacacacctgatgtgttcaagttc |
92 |
Q |
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| T |
31192632 |
gccatgaaaatgatttgtttccatcctgagctgcacataatacacctgatgtgttcaagttc |
31192693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 31175241 - 31175309
Alignment:
| Q |
120 |
tgatatgtagccttcacgttgttagctctttgagcagatgcaagtgctagaacacaaaatattaacacc |
188 |
Q |
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| T |
31175241 |
tgatatgtagcagtcacattgtttgcactttgagctgaggccaatgctagaacacaaaatatcaacacc |
31175309 |
T |
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